RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780955|ref|YP_003065368.1| hypothetical protein
CLIBASIA_04270 [Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)



>d2nysa1 b.136.1.2 (A:3-119) Uncharacterized protein AGR_C_3712p
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 117

 Score =  184 bits (468), Expect = 7e-48
 Identities = 82/115 (71%), Positives = 101/115 (87%)

Query: 28  DHIRYDILAKEALRGLVKVVLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEK 87
           DHIRYDILA++ALRG+++ VL EVA+ G LPG+HHF+ITF T A GVRISQ+L+  Y E+
Sbjct: 2   DHIRYDILAQDALRGVIRKVLGEVAATGRLPGDHHFFITFLTGAPGVRISQHLKSKYAEQ 61

Query: 88  MTIVIQNQFWDLKVLDNHFEVGLSFSNVPERLVIPFNAIKGFYDPSVNFELEFDV 142
           MTIVIQ+QFWD+KV +  FE+GLSFS+ PE+LVIP+NAI+GFYDPSVNFELEFDV
Sbjct: 62  MTIVIQHQFWDMKVTETGFEIGLSFSDTPEKLVIPYNAIRGFYDPSVNFELEFDV 116


>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB
           {Haemophilus influenzae [TaxId: 727]}
          Length = 106

 Score = 30.8 bits (70), Expect = 0.098
 Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 64  YITFATNARGVRISQNLRKNYPEKMTIVIQNQF-WDLKVLDNHFEVGLSFSNVPERLVIP 122
           Y+       GV +     K+   ++ + +      +L++ ++  +    F  V   L IP
Sbjct: 24  YLVVDATYLGVNVPVEYVKD--GQIVLNLSASATGNLQLTNDFIQFNARFKGVSRELYIP 81

Query: 123 FNAIKGFYDP 132
             A    Y  
Sbjct: 82  MGAALAIYAR 91


>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB
           {Escherichia coli [TaxId: 562]}
          Length = 108

 Score = 29.2 bits (66), Expect = 0.23
 Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 64  YITFATNARGVRISQNLRKNYPEKMTIVIQNQFWDLKVLDNHF-EVGLSFSNVPERLVIP 122
           ++       GV++     ++   ++ + I  +      L N        F  +P ++ +P
Sbjct: 26  HLVVDVTLPGVQVPMEYARD--GQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVP 83

Query: 123 FNAIKGFYD 131
             A+   Y 
Sbjct: 84  LAAVLAIYA 92


>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 140

 Score = 27.0 bits (59), Expect = 1.1
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 47  VLSEVASIGSLPGEHHFYITFATNARGVRISQNLRKNYPEKMTIVIQN 94
           V+   A +   PGE    +          I++N+ K  P+ + IV+ N
Sbjct: 70  VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN 117


>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit
          I {Cow (Bos taurus) [TaxId: 9913]}
          Length = 514

 Score = 26.7 bits (59), Expect = 1.4
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 14/63 (22%)

Query: 16 FIIKWIDTLMNYDH----IRYDILAKEALRGLVKVVLS-----EVASIGSLPGEHHFYIT 66
          FI +W+ +    +H      Y +    A  G+V   LS     E+   G+L G+   Y  
Sbjct: 2  FINRWLFST---NHKDIGTLYLLFG--AWAGMVGTALSLLIRAELGQPGTLLGDDQIYNV 56

Query: 67 FAT 69
            T
Sbjct: 57 VVT 59


>d2czla1 c.94.1.1 (A:3-272) Hypothetical protein TTHA1568 {Thermus
          thermophilus [TaxId: 274]}
          Length = 270

 Score = 26.5 bits (58), Expect = 1.9
 Identities = 6/49 (12%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 16 FIIKWIDTLMNYDHIRYDI--LAKEALRGLVKVVLSEVASIGSLPGEHH 62
           +   +++ +  + +  D+  L + AL G + +     A+   +   + 
Sbjct: 19 LVHGRVESPVPLEPVLEDVETLNRWALEGRLPLTKLSYAAYAQVRDRYV 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0724    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 786,259
Number of extensions: 35873
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 10
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)