HHsearch alignment for GI: 254780956 and conserved domain: PRK00956

>PRK00956 thyA thymidylate synthase; Provisional.
Probab=100.00  E-value=0  Score=388.90  Aligned_cols=196  Identities=22%  Similarity=0.408  Sum_probs=171.7

Q ss_pred             HHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH
Q ss_conf             79999999986392603799853477761204644236981046420226889999999853666468886400321356
Q gi|254780956|r    3 QYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWDE   82 (264)
Q Consensus         3 qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd~   82 (264)
T Consensus        12 Ay~~~l~~Il~~G~~~~~~~G~~tkel~~~~-----------~~i~~p~~~~i~~~~~~---~~~~l---~~y~~~~~--   72 (208)
T PRK00956         12 AWERLVPKIMNHGEEITDERGSKTKEIMNLI-----------IEITNPSDKSIPEKYPW---GEERL---EEYTKQLL--   72 (208)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCEEEEECCEE-----------EEECCCCCCCCCCCCCC---CHHHH---HHHHHHCC--
T ss_conf             9999999999839643489886878814638-----------99878642564654676---77899---99998655--


Q ss_pred             HHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEEEE
Q ss_conf             54210013876620100036775326889999999998088523677751698883202421135402466768805999
Q gi|254780956|r   83 WADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQ  162 (264)
Q Consensus        83 ~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~~~  162 (264)
T Consensus        73 -~~~~~~~~y~YG~r~r~~~g----~~DQi~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~~~PC~~~~qf~v~~~kL~~~  147 (208)
T PRK00956         73 -SGENQGFVYTYGERLREYPG----DVDQIDYIVEKLKEQPNSRRATAVTWDPPIDTKVDEVPCLQLVQFLIRDNKLYLT  147 (208)
T ss_pred             -CCCCCCCCCCHHHHHHHCCC----CCHHHHHHHHHHHCCCCCCEEEEEEECCCHHCCCCCCCCCCEEEEEEECCEEEEE
T ss_conf             -77679727746679971899----8419999999970599962699985881222157898996189999949928999


Q ss_pred             EEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCC
Q ss_conf             972624402220216799999999999762242111135227302100368999998336
Q gi|254780956|r  163 LYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSR  222 (264)
Q Consensus       163 ~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R  222 (264)
T Consensus       148 ~~~RS~D~~lg~p~Ni~~~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~~~v~~~lk~  207 (208)
T PRK00956        148 VLFRSNDAGGAFPANAIGLIKLGEYVAEKVGVEPGTYTHHSVSAHIYEHDWDKLEKIIKG  207 (208)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEECHHHHHHHHHHHCC
T ss_conf             985624331455516999999999999883994059999975379848789999998746