HHsearch alignment for GI: 254780956 and conserved domain: TIGR03284
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=100.00 E-value=0 Score=797.17 Aligned_cols=263 Identities=62% Similarity=1.129 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264)
Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264)
T Consensus 1 kQYl~l~~~Il~~G~~~~dRTG~gt~svFg~~~rfdl~~gFPlLTTKk~~~k~v~~ELlWfl~G~tn~~~L~~~~v~IWd 80 (296)
T TIGR03284 1 KQYLDLLRDILENGHQKGDRTGTGTISVFGYQMRFDLSKGFPLLTTKKVPFRLIASELLWFLKGDTNIRYLLDHNVNIWD 80 (296)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCEEEECCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf 92899999999829887898999747850345898666798514522045888999999999679638999976994578
Q ss_pred HHHHH---------------------------------HCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 65421---------------------------------001387662010003677532688999999999808852367
Q gi|254780956|r 82 EWADK---------------------------------DGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRH 128 (264)
Q Consensus 82 ~~a~~---------------------------------~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~ 128 (264)
T Consensus 81 ~wa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GdlGpiYG~qwR~~~~~~~~~~DQl~~vI~~lk~nP~sRR~ 160 (296)
T TIGR03284 81 EWAFERWVKSDDYQGPDMTDFGLRAQDDEEEDDEFADKYGDLGPVYGKQWRSWATPDGETIDQIKNVIEMIKTNPDSRRL 160 (296)
T ss_pred CCCCHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCHHE
T ss_conf 74223232023335631011101001243333100135786576525664013378998051999999987649654121
Q ss_pred HHHHCCHHHHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEE
Q ss_conf 77516988832024211354024667688059999726244022202167999999999997622421111352273021
Q gi|254780956|r 129 IVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHL 208 (264)
Q Consensus 129 i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HI 208 (264)
T Consensus 161 ivsaWNp~~l~~maLPPCH~~~Qf~V~~g~L~l~l~QRS~D~fLG~PFNIasYalL~~miA~~~gl~pg~l~~~~gDaHI 240 (296)
T TIGR03284 161 IVSAWNPEDVPSMALPPCHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLEVGEFVHTLGDAHL 240 (296)
T ss_pred EEECCCHHHHHCCCCCCCEEEEEEEEECCEEEEEEEEECHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEE
T ss_conf 65226966862778888814799998199999999953223214750799999999999999848757779999136576
Q ss_pred EHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 00368999998336987687799648868711262033799768768887875569
Q gi|254780956|r 209 YNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 209 Y~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
T Consensus 241 Y~nHie~v~eql~R~P~~~P~L~i~~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~mAV 296 (296)
T TIGR03284 241 YSNHLEQAKLQLTREPRPLPKLKLNPEKKDIFDFEYEDIELEGYDPHPAIKAPVAV 296 (296)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHEEEECCCCCCCCCCCCCC
T ss_conf 78689999999668999999889679988630497127799798889877766239