HHsearch results for GI: 254780956 and protein with PDBid: 1bkp_A

>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=100.00  E-value=0  Score=698.81  Aligned_cols=262  Identities=40%  Similarity=0.735  Sum_probs=254.3

Q ss_pred             HHHHHHHHHHHHCCCEE----------CCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCC-HH
Q ss_conf             57999999998639260----------37998534777612046442369810464202268899999998536664-68
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDR----------RDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSN-VS   70 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~----------~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn-~~   70 (264)
                      |||++|+++||+||+.+          .||||++|+|+||+++|||++ +||||||||++||++++|++|||+|+|| ++
T Consensus         5 ~qYl~ll~~Il~~G~~~~~~~~r~~~~~drtg~~t~sifg~~~~~d~~-~fPllTtKk~~~k~~i~EllWfl~G~tn~~~   83 (278)
T 1bkp_A            5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNS-EVPILTTKKVAWKTAIKELLWIWQLKSNDVN   83 (278)
T ss_dssp             HHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEECSS-SCCCCSSSCCCHHHHHHHHHHHHTSCCCBHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCC-CCCCEEECCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf             999999999998486743444444324688888768865715897189-9970142030389999999999716874156


Q ss_pred             HHHHHCCCHHHHHHHHHCCCCCCCCCHHHCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCC
Q ss_conf             8864003213565421001387662010003-677532688999999999808852367775169888320242113540
Q gi|254780956|r   71 YLHRHGVSIWDEWADKDGELGPIYGVQWRSW-PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCL  149 (264)
Q Consensus        71 ~l~~~~~~iWd~~a~~~g~lg~~YG~qwR~~-~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~  149 (264)
                      +|.++|++||++|++++|++|++||+|||++ ..+.++++||+++||++||+||+|||+|+++|||+++++|+|||||+.
T Consensus        84 ~l~~~~~~iW~~~~~~~g~~~~~YG~~~~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~ii~~wnp~~~~~~~lpPC~~~  163 (278)
T 1bkp_A           84 DLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYE  163 (278)
T ss_dssp             HHHTTTCCTTGGGCCTTSBCBSCTHHHHHCCCEEETTEEECHHHHHHHHHHHSTTCSCCEEESCCTTTGGGBSSCCSEEE
T ss_pred             HHHHCCCCEEHHCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCHHHHCCCCCCCEEEE
T ss_conf             78762663012105455535776673330241356886522558899987029742320010368166537877742567


Q ss_pred             EEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCE
Q ss_conf             24667688059999726244022202167999999999997622421111352273021003689999983369876877
Q gi|254780956|r  150 FQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQ  229 (264)
Q Consensus       150 ~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~  229 (264)
                      +||+|++|+|+|++||||||++||+||||++|++|++|||+.||++||+|+|++||+|||+||+|++++||+|+|+++|+
T Consensus       164 ~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~syalL~~~iA~~~gl~~G~~~~~~gd~HIY~~h~~~v~~ql~R~p~~~P~  243 (278)
T 1bkp_A          164 TQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE  243 (278)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCE
T ss_pred             EEEEEECCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCE
T ss_conf             99998089737999814155563378519999999999999729977548998401476374799999985789999998


Q ss_pred             EEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             99648868711262033799768768887875569
Q gi|254780956|r  230 MIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       230 L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|++++++|+||++|||+|+||+|||+|||||||
T Consensus       244 l~i~~~~~~i~d~~~~Df~l~~Y~~~p~ik~~~aV  278 (278)
T 1bkp_A          244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV  278 (278)
T ss_dssp             EEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC
T ss_pred             EEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             89789988531398607799798789988757619