HHSEARCH alignment of GI: 254780956 and SCOP domain: d1bkpa_

Alignment
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis [TaxId: 1423]}
Probab=100.00  E-value=0  Score=695.46  Aligned_cols=262  Identities=40%  Similarity=0.738  Sum_probs=254.5

Q ss_pred             HHHHHHHHHHHHCCCEEC----------CCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCC-HH
Q ss_conf             579999999986392603----------7998534777612046442369810464202268899999998536664-68
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRR----------DRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSN-VS   70 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~----------dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn-~~   70 (264)
                      +||++++++||++|+.++          ||||++|+|+||+++|||+++ ||||||||++||++++|++|||+|+|| ++
T Consensus         5 ~qYl~ll~~Il~~G~~~~~~~~~~~~~~drtg~~T~s~fg~~~~~dl~~-fPllTtKk~~~k~~~~EllW~l~G~tn~~~   83 (278)
T d1bkpa_           5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNSE-VPILTTKKVAWKTAIKELLWIWQLKSNDVN   83 (278)
T ss_dssp             HHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEECSSS-CCCCSSSCCCHHHHHHHHHHHHTSCCCBHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCC-CCEEEEECCCHHHHHHHHHHHHCCCCCHHH
T ss_conf             9999999999984866434444444246887787689636579981899-971453033089999999999627863001


Q ss_pred             HHHHHCCCHHHHHHHHHCCCCCCCCCHHHCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCC
Q ss_conf             8864003213565421001387662010003-677532688999999999808852367775169888320242113540
Q gi|254780956|r   71 YLHRHGVSIWDEWADKDGELGPIYGVQWRSW-PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCL  149 (264)
Q Consensus        71 ~l~~~~~~iWd~~a~~~g~lg~~YG~qwR~~-~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~  149 (264)
                      .|.+++++||++|++++|++|++||+|||++ ..+.++++||+++||++||+||+|||+|+++|||.++++|+|||||..
T Consensus        84 ~l~~~~~~iW~~~~~~~g~~~~~YG~~~~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~vi~~wnp~~~~~~~l~PC~~~  163 (278)
T d1bkpa_          84 DLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYE  163 (278)
T ss_dssp             HHHTTTCCTTGGGCCTTSBCBSCTHHHHHCCCEEETTEEECHHHHHHHHHHHSTTCSCCEEESCCTTTGGGBSSCCSEEE
T ss_pred             HHHHCCCCHHHHCCCCHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHCCCHHCEEE
T ss_conf             21212233003202111212322120100020001111105898999988518042010153189889740430102025


Q ss_pred             EEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCE
Q ss_conf             24667688059999726244022202167999999999997622421111352273021003689999983369876877
Q gi|254780956|r  150 FQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQ  229 (264)
Q Consensus       150 ~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~  229 (264)
                      +||+|++|+|+|+++|||||++||+||||++|++|++|||+.||++||+|+|++||+|||+||+|+|++||+|+|+++|+
T Consensus       164 ~qF~v~~g~L~~~~~qRS~D~~lG~pfNi~~~~~L~~~iA~~~g~~~G~~~~~~~d~HIY~nh~~~v~~ql~R~p~~~P~  243 (278)
T d1bkpa_         164 TQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE  243 (278)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCE
T ss_pred             EEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEHHHHHHHHHHHCCCCCCCCE
T ss_conf             78985599868999830567888623899999999999987504777537998422786172799999995789999998


Q ss_pred             EEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             99648868711262033799768768887875569
Q gi|254780956|r  230 MIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       230 L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|++++++|+||+++||+|+||+|||+|||||||
T Consensus       244 l~i~~~~~~i~d~~~~Df~l~~Y~~~p~Ik~~maV  278 (278)
T d1bkpa_         244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV  278 (278)
T ss_dssp             EEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC
T ss_pred             EEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             99789978531398116799798899977705159


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Thymidylate synthase
species: Bacillus subtilis [TaxId: 1423]