HHSEARCH alignment of GI: 254780956 and SCOP domain: d1j3kc_

Alignment
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00  E-value=0  Score=748.65  Aligned_cols=263  Identities=47%  Similarity=0.895  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      +||++||++||++|+.++||||++|+|+||++|||||++|||||||||++||++++||||||+|+||+++|+++||||||
T Consensus        44 ~QYl~ll~~Il~~G~~~~dRTG~gT~s~FG~~~rfdL~~gFPlLTTKKv~~K~vi~ELLWfL~G~tn~~~L~~~~v~IWd  123 (326)
T d1j3kc_          44 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWE  123 (326)
T ss_dssp             HHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTS
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf             99999999999829805788987669962515798614597415752014999999999997588526568756975462


Q ss_pred             HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf             65421------------0013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r   82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM  141 (264)
Q Consensus        82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~  141 (264)
                      +|+++            +|++||+||+|||+|+        ++.++++||+++||++||+||+|||+|+++|||.++++|
T Consensus       124 ~~a~~e~~~~~~~~~~~~gdlGpvYG~qwR~~~~~~~~~~~~~~~~~~DQl~~vI~~Lk~nP~sRR~ii~~wnp~~l~~~  203 (326)
T d1j3kc_         124 ANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQM  203 (326)
T ss_dssp             GGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGS
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCC
T ss_conf             10123342210002334575000244321346865566767654323326999999987599834058886387786755


Q ss_pred             CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC
Q ss_conf             42113540246676880599997262440222021679999999999976224211113522730210036899999833
Q gi|254780956|r  142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS  221 (264)
Q Consensus       142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~  221 (264)
                      +|||||+.+||+|++|+|+|++||||+|+|||+||||++||+|++|||+.||++||+|+|++||+|||+||+++|++||+
T Consensus       204 ~lpPCh~~~qF~v~~g~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~h~~gd~HIY~nH~~~vkeqL~  283 (326)
T d1j3kc_         204 ALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN  283 (326)
T ss_dssp             SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTT
T ss_pred             CCCEEEEEEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf             64100267788605773899997221121422036999999999999985055344899998888984767999999966


Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             6987687799648868711262033799768768887875569
Q gi|254780956|r  222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      |+|+++|+|+|++++++|+||+++||+|+||+|||+||||||-
T Consensus       284 R~P~~~P~L~i~~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~maa  326 (326)
T d1j3kc_         284 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA  326 (326)
T ss_dssp             SCCCCCCEEEECTTCCSGGGCCGGGEEEECCCCCCCCCCCSCC
T ss_pred             CCCCCCCEEEECCCCCCHHCCCEEHEEEECCCCCCCCCCCCCC
T ss_conf             8998999889789999540098015899898889877757459


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]