HHSEARCH alignment of GI: 254780956 and SCOP domain: d1tswa_

Alignment
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]}
Probab=100.00  E-value=0  Score=750.96  Aligned_cols=263  Identities=55%  Similarity=0.987  Sum_probs=260.1

Q ss_pred             HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf             57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r    2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD   81 (264)
Q Consensus         2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd   81 (264)
                      +|||+|+++||++|+.++||||++|+|+||+++||||++|||||||||||||++++||||||+|+||++.|+++||||||
T Consensus         4 ~qYl~l~~~Il~~G~~~~dRTG~gT~s~FG~~~rfdL~~gfPlLTTKk~~~k~ii~ELLWfl~G~tn~~~L~~~~v~IWd   83 (316)
T d1tswa_           4 QPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHRNHIWD   83 (316)
T ss_dssp             HHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEETTSCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTTH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf             99999999999859887898988759973145897467897436750256898999999999668558999975987666


Q ss_pred             HHHHHH--------------------------------------------------CCCCCCCCCHHHCCCCCCCCHHHH
Q ss_conf             654210--------------------------------------------------013876620100036775326889
Q gi|254780956|r   82 EWADKD--------------------------------------------------GELGPIYGVQWRSWPDYDGNVIDQ  111 (264)
Q Consensus        82 ~~a~~~--------------------------------------------------g~lg~~YG~qwR~~~~~~~~~~DQ  111 (264)
                      +|++++                                                  |++|++||+|||+|.+++++++||
T Consensus        84 ~~a~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~G~lg~~YG~qwr~~~~~~~~~~DQ  163 (316)
T d1tswa_          84 EWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQ  163 (316)
T ss_dssp             HHHHHHHHTSTTCCSSCCTTHHHHHTTCSHHHHHHHHHHHHHHHHHHHCHHHHHHHTBCCSSHHHHHHCEECSSSCEECH
T ss_pred             CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHH
T ss_conf             51266555301224764334452222453213211577998887742344433456756555563035545657852467


Q ss_pred             HHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999808852367775169888320242113540246676880599997262440222021679999999999976
Q gi|254780956|r  112 ISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASV  191 (264)
Q Consensus       112 l~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~  191 (264)
                      +++||++||+||+|||+|+++|||.++++|+|||||..+||+|++|+|+|+++|||||++||+|||||+||+|++|||+.
T Consensus       164 l~~vi~~Lk~~p~sRR~iis~Wnp~~~~~~~lpPCh~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~  243 (316)
T d1tswa_         164 LGDVIEQIKTHPYSRALIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHE  243 (316)
T ss_dssp             HHHHHHHHHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCHHCCCEEEEECCHHHHCCCCCCCCCHHHEEEECCCCEEEEEEECCHHEEEECCHHHHHHHHHHHHHHHH
T ss_conf             99999976225010302554077899546787534543404305783589999740221010727899999999999988


Q ss_pred             HCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             2242111135227302100368999998336987687799648868711262033799768768887875569
Q gi|254780956|r  192 IGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV  264 (264)
Q Consensus       192 ~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV  264 (264)
                      ||++||+|+|++||+|||+||+|++++||+|+|+++|+|+|++++++|+||+++||+|+||+|||+|||||||
T Consensus       244 ~gl~~G~~~h~~gd~HIY~nH~e~v~eqL~R~P~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~mAV  316 (316)
T d1tswa_         244 CGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV  316 (316)
T ss_dssp             TTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECSSCCCGGGCCGGGEEEECCCCCCCCCCCCCC
T ss_pred             HHCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf             7525753999950389867279999999668998999679589988421397479789898678887603149


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Thymidylate synthase/dCMP hydroxymethylase
superfamily: Thymidylate synthase/dCMP hydroxymethylase
family: Thymidylate synthase/dCMP hydroxymethylase
domain: Thymidylate synthase
species: Lactobacillus casei [TaxId: 1582]