Query gi|254780956|ref|YP_003065369.1| thymidylate synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 264
No_of_seqs 158 out of 1666
Neff 5.7
Searched_HMMs 13730
Date Wed Jun 1 10:59:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780956.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f28a_ d.117.1.1 (A:) Thymidy 100.0 0 0 754.5 22.1 263 2-264 5-295 (295)
2 d1tswa_ d.117.1.1 (A:) Thymidy 100.0 0 0 751.0 22.7 263 2-264 4-316 (316)
3 d1j3kc_ d.117.1.1 (C:) Bifunct 100.0 0 0 748.6 23.0 263 2-264 44-326 (326)
4 d2g8oa1 d.117.1.1 (A:1-264) Th 100.0 0 0 739.0 22.4 264 1-264 1-264 (264)
5 d1seja2 d.117.1.1 (A:233-521) 100.0 0 0 733.7 23.8 263 2-264 6-289 (289)
6 d1hvya_ d.117.1.1 (A:) Thymidy 100.0 0 0 725.3 22.9 263 2-264 6-288 (288)
7 d1bkpa_ d.117.1.1 (A:) Thymidy 100.0 0 0 695.5 21.6 262 2-264 5-278 (278)
8 d1tisa_ d.117.1.1 (A:) Thymidy 100.0 0 0 694.0 14.3 259 1-264 1-286 (286)
9 d1b5ea_ d.117.1.1 (A:) dCMP hy 100.0 0 0 520.7 13.2 216 1-226 8-235 (241)
10 d1kwaa_ b.36.1.1 (A:) Cask/Lin 39.1 11 0.00082 15.9 3.5 49 188-237 37-86 (88)
11 d1ky9b2 b.36.1.4 (B:359-446) P 38.7 11 0.00083 15.9 4.0 48 189-239 38-85 (88)
12 d1w9ea1 b.36.1.1 (A:110-194) S 38.0 12 0.00085 15.8 3.3 46 188-233 37-82 (85)
13 d1zd0a1 d.329.1.1 (A:9-144) Hy 35.3 8.6 0.00063 16.6 1.9 31 48-78 58-89 (136)
14 d1cola_ f.1.1.1 (A:) Colicin A 27.9 8.3 0.00061 16.7 0.8 45 90-142 41-91 (197)
15 d1vaea_ b.36.1.1 (A:) Rhophili 27.6 17 0.0013 14.7 2.5 46 188-233 48-93 (111)
16 d2f5ya1 b.36.1.1 (A:19-95) Reg 24.5 20 0.0015 14.4 3.3 44 189-233 31-74 (77)
17 d1ciia1 f.1.1.1 (A:451-624) Co 21.7 6 0.00044 17.5 -0.9 33 110-142 41-79 (174)
18 d1vb7a_ b.36.1.1 (A:) PDZ-LIM 21.3 23 0.0017 14.0 3.8 45 189-234 43-87 (94)
19 d1a87a_ f.1.1.1 (A:) Colicin N 20.2 18 0.0013 14.6 1.3 99 34-142 66-189 (297)
No 1
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]}
Probab=100.00 E-value=0 Score=754.49 Aligned_cols=263 Identities=50% Similarity=0.947 Sum_probs=255.8
Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEE-CEEEEECC-CCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCH
Q ss_conf 579999999986392603799853477761-20464423-6981046420226889999999853666468886400321
Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDLS-KGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSI 79 (264)
Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg-~~~~~dl~-~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~i 79 (264)
+||++||++||++|+.++||||++|+|+|| .+|||||+ +|||||||||||||++++||||||+|+||++.|+++||||
T Consensus 5 ~qYl~ll~~Il~~G~~k~dRTG~gt~s~Fg~~~lrfdL~~~gFPlLTTKkv~~k~vi~ELLWfl~G~tn~~~L~~~~v~i 84 (295)
T d1f28a_ 5 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEELLWFIRGETDSLKLREKNIHI 84 (295)
T ss_dssp HHHHHHHHHHHHHCEEEECTTSSEEEEEESCCCEEEECGGGBCCCCSSSCCCHHHHHHHHHHHHTTCCBHHHHHTTTCCT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 99999999999859776887897169872463169976889853465121369999999999986661677776521122
Q ss_pred HHHHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHH
Q ss_conf 3565421------------0013876620100036--------7753268899999999980885236777516988832
Q gi|254780956|r 80 WDEWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALID 139 (264)
Q Consensus 80 Wd~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~ 139 (264)
||+|+++ +|++||+||+|||+|+ +|+++++|||++||++||+||+|||+|+++|||++++
T Consensus 85 Wd~~~~~~~~~~~~~~~~~~gdlGp~YG~qwr~~~~~~~~~~~~~~~~g~DQl~~vi~~lk~nP~sRR~iis~Wnp~~l~ 164 (295)
T d1f28a_ 85 WDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLE 164 (295)
T ss_dssp THHHHSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGG
T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHC
T ss_conf 20122321333124111106874432223555248744445446788571899999974500887400588834676723
Q ss_pred HCCCCCCCCCEEEEEC------CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHH
Q ss_conf 0242113540246676------8805999972624402220216799999999999762242111135227302100368
Q gi|254780956|r 140 KMALPPCHCLFQFYVD------NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHF 213 (264)
Q Consensus 140 ~~~lpPC~~~~qf~v~------~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~ 213 (264)
+|||||||+.+||+|+ +|+|+|++||||+|+|||+|||||+||+|++|||++||++||+|+|++||+|||+||+
T Consensus 165 ~~~LpPCh~~~qf~V~~~~~~~~~~L~~~~~QRS~D~~LG~pfNiasyalL~~~iA~~~gl~~g~~~~~~gd~HIY~nH~ 244 (295)
T d1f28a_ 165 KMALPPCHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI 244 (295)
T ss_dssp GSSSCCSEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCCCCCEEEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEHHHHHH
T ss_conf 02221043055788613687776638999963366554303023899999999999971866652899823046188699
Q ss_pred HHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 999998336987687799648868711262033799768768887875569
Q gi|254780956|r 214 EQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 214 ~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
|+|+|||+|+|+++|+|+|++++++|+||+++||+|+||+|||+|||||||
T Consensus 245 e~v~eqL~R~P~~~P~L~i~~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~mAV 295 (295)
T d1f28a_ 245 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 295 (295)
T ss_dssp HHHHTGGGSCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred HHHHHHHCCCCCCCCEEEECCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf 999999658998999889589988551396225699796689986604159
No 2
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]}
Probab=100.00 E-value=0 Score=750.96 Aligned_cols=263 Identities=55% Similarity=0.987 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264)
Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264)
+|||+|+++||++|+.++||||++|+|+||+++||||++|||||||||||||++++||||||+|+||++.|+++||||||
T Consensus 4 ~qYl~l~~~Il~~G~~~~dRTG~gT~s~FG~~~rfdL~~gfPlLTTKk~~~k~ii~ELLWfl~G~tn~~~L~~~~v~IWd 83 (316)
T d1tswa_ 4 QPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHRNHIWD 83 (316)
T ss_dssp HHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEETTSCCCCCSSSCCCHHHHHHHHHHHHTTCCBTHHHHTTTCCTTH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf 99999999999859887898988759973145897467897436750256898999999999668558999975987666
Q ss_pred HHHHHH--------------------------------------------------CCCCCCCCCHHHCCCCCCCCHHHH
Q ss_conf 654210--------------------------------------------------013876620100036775326889
Q gi|254780956|r 82 EWADKD--------------------------------------------------GELGPIYGVQWRSWPDYDGNVIDQ 111 (264)
Q Consensus 82 ~~a~~~--------------------------------------------------g~lg~~YG~qwR~~~~~~~~~~DQ 111 (264)
+|++++ |++|++||+|||+|.+++++++||
T Consensus 84 ~~a~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~G~lg~~YG~qwr~~~~~~~~~~DQ 163 (316)
T d1tswa_ 84 EWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQ 163 (316)
T ss_dssp HHHHHHHHTSTTCCSSCCTTHHHHHTTCSHHHHHHHHHHHHHHHHHHHCHHHHHHHTBCCSSHHHHHHCEECSSSCEECH
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHH
T ss_conf 51266555301224764334452222453213211577998887742344433456756555563035545657852467
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999808852367775169888320242113540246676880599997262440222021679999999999976
Q gi|254780956|r 112 ISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASV 191 (264)
Q Consensus 112 l~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~ 191 (264)
+++||++||+||+|||+|+++|||.++++|+|||||..+||+|++|+|+|+++|||||++||+|||||+||+|++|||+.
T Consensus 164 l~~vi~~Lk~~p~sRR~iis~Wnp~~~~~~~lpPCh~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~ 243 (316)
T d1tswa_ 164 LGDVIEQIKTHPYSRALIVSAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHE 243 (316)
T ss_dssp HHHHHHHHHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHCCCEEEEECCHHHHCCCCCCCCCHHHEEEECCCCEEEEEEECCHHEEEECCHHHHHHHHHHHHHHHH
T ss_conf 99999976225010302554077899546787534543404305783589999740221010727899999999999988
Q ss_pred HCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 2242111135227302100368999998336987687799648868711262033799768768887875569
Q gi|254780956|r 192 IGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 192 ~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
||++||+|+|++||+|||+||+|++++||+|+|+++|+|+|++++++|+||+++||+|+||+|||+|||||||
T Consensus 244 ~gl~~G~~~h~~gd~HIY~nH~e~v~eqL~R~P~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~hp~Ik~~mAV 316 (316)
T d1tswa_ 244 CGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLLNYDPYPAIKAPVAV 316 (316)
T ss_dssp TTCEEEEEEEEEEEEEEEGGGHHHHHHHTTSCCCCCCEEEECSSCCCGGGCCGGGEEEECCCCCCCCCCCCCC
T ss_pred HHCCCCEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf 7525753999950389867279999999668998999679589988421397479789898678887603149
No 3
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=100.00 E-value=0 Score=748.65 Aligned_cols=263 Identities=47% Similarity=0.895 Sum_probs=257.0
Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264)
Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264)
+||++||++||++|+.++||||++|+|+||++|||||++|||||||||++||++++||||||+|+||+++|+++||||||
T Consensus 44 ~QYl~ll~~Il~~G~~~~dRTG~gT~s~FG~~~rfdL~~gFPlLTTKKv~~K~vi~ELLWfL~G~tn~~~L~~~~v~IWd 123 (326)
T d1j3kc_ 44 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLWFIRGETNGNTLLNKNVRIWE 123 (326)
T ss_dssp HHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEETTTCCCCCSSSCCCCHHHHHHHHHHHTTCCBHHHHHTTTCCTTS
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf 99999999999829805788987669962515798614597415752014999999999997588526568756975462
Q ss_pred HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf 65421------------0013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r 82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264)
Q Consensus 82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264)
+|+++ +|++||+||+|||+|+ ++.++++||+++||++||+||+|||+|+++|||.++++|
T Consensus 124 ~~a~~e~~~~~~~~~~~~gdlGpvYG~qwR~~~~~~~~~~~~~~~~~~DQl~~vI~~Lk~nP~sRR~ii~~wnp~~l~~~ 203 (326)
T d1j3kc_ 124 ANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQM 203 (326)
T ss_dssp GGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCGGGGGGS
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHCCCC
T ss_conf 10123342210002334575000244321346865566767654323326999999987599834058886387786755
Q ss_pred CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC
Q ss_conf 42113540246676880599997262440222021679999999999976224211113522730210036899999833
Q gi|254780956|r 142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 (264)
Q Consensus 142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~ 221 (264)
+|||||+.+||+|++|+|+|++||||+|+|||+||||++||+|++|||+.||++||+|+|++||+|||+||+++|++||+
T Consensus 204 ~lpPCh~~~qF~v~~g~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~h~~gd~HIY~nH~~~vkeqL~ 283 (326)
T d1j3kc_ 204 ALPPCHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 283 (326)
T ss_dssp SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHTT
T ss_pred CCCEEEEEEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECHHHHHHHHHHHC
T ss_conf 64100267788605773899997221121422036999999999999985055344899998888984767999999966
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 6987687799648868711262033799768768887875569
Q gi|254780956|r 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
|+|+++|+|+|++++++|+||+++||+|+||+|||+||||||-
T Consensus 284 R~P~~~P~L~i~~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~maa 326 (326)
T d1j3kc_ 284 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMAA 326 (326)
T ss_dssp SCCCCCCEEEECTTCCSGGGCCGGGEEEECCCCCCCCCCCSCC
T ss_pred CCCCCCCEEEECCCCCCHHCCCEEHEEEECCCCCCCCCCCCCC
T ss_conf 8998999889789999540098015899898889877757459
No 4
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=738.97 Aligned_cols=264 Identities=58% Similarity=1.110 Sum_probs=262.6
Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH
Q ss_conf 95799999999863926037998534777612046442369810464202268899999998536664688864003213
Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW 80 (264)
Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264)
||||++|+++||++|+.++||||++|+|+||+++|||+++|||+|||||++||++++|++|||+|+||+++|++++++||
T Consensus 1 m~qYl~ll~~Il~~G~~~~dRtG~~t~sifg~~~~~Dl~~gfPllTtKk~~~k~~~~EllWfl~G~t~~~~l~~~~~~iW 80 (264)
T d2g8oa1 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIW 80 (264)
T ss_dssp CHHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEEGGGCCCCCCSSCCCHHHHHHHHHHHHHTCCBTHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCHH
T ss_conf 96899999999981988238998508999155489861018971330355431037999999836726566564065410
Q ss_pred HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCCEEE
Q ss_conf 56542100138766201000367753268899999999980885236777516988832024211354024667688059
Q gi|254780956|r 81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLS 160 (264)
Q Consensus 81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~~qf~v~~g~L~ 160 (264)
|+|++++|++|++||+|||+|+.++|+++||+++||++||+||+|||+|+++|||.++++|+|||||.++||+|++|+|+
T Consensus 81 d~~~~~~G~lg~~YG~q~r~~~~~~~~~~dQl~~vi~~Lk~~p~sRR~v~~~wnp~~~~~~~l~PC~~~~qf~v~~~~L~ 160 (264)
T d2g8oa1 81 DEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS 160 (264)
T ss_dssp GGGCCTTSBCCSCHHHHHHHEEETTTEEECHHHHHHHHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEEEETTEEE
T ss_pred HHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHCCCCCCCEEEEEEECCCCCE
T ss_conf 12212354425430010353367677431589999998634744405899714455554136440333369998189837
Q ss_pred EEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
Q ss_conf 99972624402220216799999999999762242111135227302100368999998336987687799648868711
Q gi|254780956|r 161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240 (264)
Q Consensus 161 ~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i~ 240 (264)
|+++|||||++||+|||+++|++|+++||+.||++||+|+|++||+|||+||+|++++||+|+|+++|+|+|++++++|+
T Consensus 161 ~~~~qRS~D~~lG~p~ni~~~~~L~~~iA~~~gl~~G~~~~~~gd~HIY~nh~e~v~~ql~R~p~~~P~l~i~~~~~~i~ 240 (264)
T d2g8oa1 161 CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240 (264)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHTSCCCCCCEEEECCCCSSTT
T ss_pred EEEEECHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCCC
T ss_conf 99997400345447768999999999998760567607999942368846279999998478998998678689988502
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 262033799768768887875569
Q gi|254780956|r 241 SFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 241 d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
|+++|||+|+||+|||+|||||||
T Consensus 241 ~~~~~Df~l~~Y~~hp~Ik~~maV 264 (264)
T d2g8oa1 241 DYRFEDFEIEGYDPHPGIKAPVAI 264 (264)
T ss_dssp CCCGGGEEEESCCCCCCCCCCCCC
T ss_pred CCCHHHEEEECCCCCCCCCCCEEC
T ss_conf 597138799798789987601169
No 5
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, TS domain {Cryptosporidium hominis [TaxId: 237895]}
Probab=100.00 E-value=0 Score=733.71 Aligned_cols=263 Identities=49% Similarity=0.892 Sum_probs=256.5
Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264)
Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264)
+||++|+++||++|+.++||||++|+|+||+++||||++|||||||||+|||++++||+|||+|+||+++|++.+++||+
T Consensus 6 ~qYl~ll~~IL~~G~~~~dRTG~~t~sifg~~~rfDl~~gFPllTtKk~~~K~ii~EllWfl~G~tn~~~L~~~~v~iW~ 85 (289)
T d1seja2 6 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIWFIKGDTNGNHLIEKKVYIWS 85 (289)
T ss_dssp HHHHHHHHHHHHHCEEECCSSSSCEEEEEEEEEEEECSSCCCCCSSSCCCHHHHHHHHHHHHHTCCBHHHHHHTTCCTTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCC
T ss_conf 99999999999819887899988669981334898377898556752156788999999998616125677740444221
Q ss_pred HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf 65421------------0013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r 82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264)
Q Consensus 82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264)
+|+++ +|++||+||+|||+|. +|.++++|||++||++||+||+|||+|+++|||+++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~gdlG~~YG~qwr~~~~~~~~~~~~y~~~~~DQl~~vi~~Lk~nP~sRR~ii~~wnp~~~~~~ 165 (289)
T d1seja2 86 GNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQM 165 (289)
T ss_dssp GGGSHHHHHHTTCTTSCTTBCCSCTTHHHHHBTCCCCCSSSCCTTCSBCHHHHHHHHHHHCTTCSCCEEECCCTTTGGGS
T ss_pred CCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHCC
T ss_conf 34321234413555200266563201222312565566664567877279999999985196340057565578787415
Q ss_pred CCCCCCCCEEEEECC-CEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHH
Q ss_conf 421135402466768-8059999726244022202167999999999997622421111352273021003689999983
Q gi|254780956|r 142 ALPPCHCLFQFYVDN-GKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220 (264)
Q Consensus 142 ~lpPC~~~~qf~v~~-g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql 220 (264)
+|||||+.+||+|.+ |+|+|++||||+|++||+||||++||+|++|||++||++||+|+|++||+|||+||+|++++||
T Consensus 166 ~l~PCh~~~~f~v~~~~~L~~~~~qRS~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~~~~gd~HIY~nh~~~vkeqL 245 (289)
T d1seja2 166 ALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL 245 (289)
T ss_dssp SSCCSEEEEEEEECTTSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCEEEEEEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEEECEEEEHHHHHHHHHHHH
T ss_conf 70133224578961784289999823620776415789999999999998719887518999530785185899999996
Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 36987687799648868711262033799768768887875569
Q gi|254780956|r 221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 221 ~R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
+|+|+++|+|+|++++++|+||++|||+|+||+|||+|||||||
T Consensus 246 ~R~p~~~P~l~i~~~~~~i~d~~~~Df~L~~Y~~hp~Ik~~maV 289 (289)
T d1seja2 246 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 289 (289)
T ss_dssp TSCCCCCCEEEESSCCSSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred CCCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCEEC
T ss_conf 68998999789679978411699779799898789986502059
No 6
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=0 Score=725.26 Aligned_cols=263 Identities=49% Similarity=0.961 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHH
Q ss_conf 57999999998639260379985347776120464423698104642022688999999985366646888640032135
Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWD 81 (264)
Q Consensus 2 ~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iWd 81 (264)
.||++|+++||++|+.++||||++|+|+||+++||||++|||||||||++||++++||+|||+|+||+++|++++++|||
T Consensus 6 ~qYl~l~~~Il~~G~~~~dRtG~~T~svfg~~~r~dl~~gfPlLTtKk~~~k~~~~ElLWfl~G~tn~~~l~~~~~~iWd 85 (288)
T d1hvya_ 6 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWD 85 (288)
T ss_dssp HHHHHHHHHHHHHCEEECCTTSSCEEEEEEEEEEEECTTCCCCCTTTTCCHHHHHHHHHHHHTTCCBHHHHHTTTCCTTT
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEECCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEC
T ss_conf 99999999999829786898998779980444798677798665643530788999999998612155555413523432
Q ss_pred HHHHH------------HCCCCCCCCCHHHCCC--------CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHC
Q ss_conf 65421------------0013876620100036--------775326889999999998088523677751698883202
Q gi|254780956|r 82 EWADK------------DGELGPIYGVQWRSWP--------DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKM 141 (264)
Q Consensus 82 ~~a~~------------~g~lg~~YG~qwR~~~--------~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~ 141 (264)
+|+++ +|++|++||+|||+|+ ++.++++|||++||++||+||+|||+|+++|||.++++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~dlG~~YG~qwr~~g~~y~~~~~~~~~~~iDQl~~vi~~Lk~~p~sRR~ii~~wnp~~~~~~ 165 (288)
T d1hvya_ 86 ANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDMESDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLM 165 (288)
T ss_dssp GGGSHHHHHHTTCTTSCTTBCCSCHHHHHHHBTSCCCCTTCCCTTCSBCHHHHHHHHHHHCTTCTTCEEECCCTTTGGGC
T ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCC
T ss_conf 20112102331322333332441220133302543433323578977248999999973298756056663678884112
Q ss_pred CCCCCCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHC
Q ss_conf 42113540246676880599997262440222021679999999999976224211113522730210036899999833
Q gi|254780956|r 142 ALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221 (264)
Q Consensus 142 ~lpPC~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~ 221 (264)
+|||||..+||+|++|+|+|+++|||||++||+||||++||+|++|||++||++||+|+|++||+|||+||+|+|++||+
T Consensus 166 ~l~PC~~~~qf~v~~~~L~~~~~qRS~D~~lG~pfNi~~~a~L~~~iA~~~gl~~G~~~~~~~d~HIY~nh~~~v~~qL~ 245 (288)
T d1hvya_ 166 ALPPCHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ 245 (288)
T ss_dssp SSCCSEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEEEEEEGGGHHHHHHHHT
T ss_pred CHHCCCHHHEEEECCCCCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHHHHHHHHHHC
T ss_conf 02014322247834576657998224433333336899999999999875046542599995127873858999999966
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 6987687799648868711262033799768768887875569
Q gi|254780956|r 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 222 R~p~~~P~L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
|+|+++|+|+|++++++|+|++++||+|+||+|||+|||||||
T Consensus 246 R~p~~~P~l~i~~~~~~i~d~~~~Df~l~~Y~~~p~Ik~~mAV 288 (288)
T d1hvya_ 246 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288 (288)
T ss_dssp SCCCCCCEEEECSCCCSGGGCCGGGEEEESCCCCCCCCCCCCC
T ss_pred CCCCCCCEEEECCCCCCCCCCCHHHEEEECCCCCCCCCCCEEC
T ss_conf 8998998568469988130787748689898779877714059
No 7
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=0 Score=695.46 Aligned_cols=262 Identities=40% Similarity=0.738 Sum_probs=254.5
Q ss_pred HHHHHHHHHHHHCCCEEC----------CCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCC-HH
Q ss_conf 579999999986392603----------7998534777612046442369810464202268899999998536664-68
Q gi|254780956|r 2 HQYLDLLRHVIKFGSDRR----------DRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSN-VS 70 (264)
Q Consensus 2 ~qYl~l~~~il~~G~~~~----------dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn-~~ 70 (264)
+||++++++||++|+.++ ||||++|+|+||+++|||+++ ||||||||++||++++|++|||+|+|| ++
T Consensus 5 ~qYl~ll~~Il~~G~~~~~~~~~~~~~~drtg~~T~s~fg~~~~~dl~~-fPllTtKk~~~k~~~~EllW~l~G~tn~~~ 83 (278)
T d1bkpa_ 5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNSE-VPILTTKKVAWKTAIKELLWIWQLKSNDVN 83 (278)
T ss_dssp HHHHHHHHHHHHHCEECTTSCCCCBBTTTCCBCCEEEEEEEEEEECSSS-CCCCSSSCCCHHHHHHHHHHHHTSCCCBHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCC-CCEEEEECCCHHHHHHHHHHHHCCCCCHHH
T ss_conf 9999999999984866434444444246887787689636579981899-971453033089999999999627863001
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCHHHCC-CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCCCCC
Q ss_conf 8864003213565421001387662010003-677532688999999999808852367775169888320242113540
Q gi|254780956|r 71 YLHRHGVSIWDEWADKDGELGPIYGVQWRSW-PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCL 149 (264)
Q Consensus 71 ~l~~~~~~iWd~~a~~~g~lg~~YG~qwR~~-~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpPC~~~ 149 (264)
.|.+++++||++|++++|++|++||+|||++ ..+.++++||+++||++||+||+|||+|+++|||.++++|+|||||..
T Consensus 84 ~l~~~~~~iW~~~~~~~g~~~~~YG~~~~~~~~~~~~~~~DQl~~vi~~Lk~nP~sRR~vi~~wnp~~~~~~~l~PC~~~ 163 (278)
T d1bkpa_ 84 DLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKVDQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYE 163 (278)
T ss_dssp HHHTTTCCTTGGGCCTTSBCBSCTHHHHHCCCEEETTEEECHHHHHHHHHHHSTTCSCCEEESCCTTTGGGBSSCCSEEE
T ss_pred HHHHCCCCHHHHCCCCHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHCCCHHCEEE
T ss_conf 21212233003202111212322120100020001111105898999988518042010153189889740430102025
Q ss_pred EEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCE
Q ss_conf 24667688059999726244022202167999999999997622421111352273021003689999983369876877
Q gi|254780956|r 150 FQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQ 229 (264)
Q Consensus 150 ~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~ 229 (264)
+||+|++|+|+|+++|||||++||+||||++|++|++|||+.||++||+|+|++||+|||+||+|+|++||+|+|+++|+
T Consensus 164 ~qF~v~~g~L~~~~~qRS~D~~lG~pfNi~~~~~L~~~iA~~~g~~~G~~~~~~~d~HIY~nh~~~v~~ql~R~p~~~P~ 243 (278)
T d1bkpa_ 164 TQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE 243 (278)
T ss_dssp EEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEEGGGHHHHHHHHHSCCCCCCE
T ss_pred EEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEHHHHHHHHHHHCCCCCCCCE
T ss_conf 78985599868999830567888623899999999999987504777537998422786172799999995789999998
Q ss_pred EEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 99648868711262033799768768887875569
Q gi|254780956|r 230 MIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 230 L~i~~~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
|+|++++++|+||+++||+|+||+|||+|||||||
T Consensus 244 l~i~~~~~~i~d~~~~Df~l~~Y~~~p~Ik~~maV 278 (278)
T d1bkpa_ 244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278 (278)
T ss_dssp EEECTTCCSGGGCCGGGEEEESCCCCCCCCCCCBC
T ss_pred EEECCCCCCCCCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf 99789978531398116799798899977705159
No 8
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4 [TaxId: 10665]}
Probab=100.00 E-value=0 Score=694.03 Aligned_cols=259 Identities=46% Similarity=0.849 Sum_probs=249.1
Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHH------
Q ss_conf 95799999999863926037998534777612046442369810464202268899999998536664688864------
Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHR------ 74 (264)
Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~------ 74 (264)
||||++|+++||++|+.++||||++|+|+||+++||||++|||||||||++||++++|++|||+|+||+++|++
T Consensus 1 mkqYl~l~~~Il~~G~~~~dRtG~~T~sifG~~~r~dl~~gfPllTtKk~~~k~~i~EllWfl~G~tni~~L~~~~~~~~ 80 (286)
T d1tisa_ 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELIWFLSGSTNVNDLRLIQHDSL 80 (286)
T ss_dssp CCHHHHHHHHHHTTCCEECCSSCSCEEEEECCEEEEEGGGCCCCCCSSCCCCHHHHHHHHHHHHTCCBHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCEEEEECCCCCCCEEECCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCH
T ss_conf 96899999999985988779998877886124279716889860010343206789989998716998999997520210
Q ss_pred -HCCCHHHHHHH--------HHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCC
Q ss_conf -00321356542--------100138766201000367753268899999999980885236777516988832024211
Q gi|254780956|r 75 -HGVSIWDEWAD--------KDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPP 145 (264)
Q Consensus 75 -~~~~iWd~~a~--------~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~~~~~~~lpP 145 (264)
.++++|++++. ++|++|++||+|||+|. ++||+++||++||+||+|||+|+++|||.++++|++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~g~~g~~YG~~~r~~~-----~~DQl~~vi~~Lk~~p~sRR~i~~~wnp~~~~~~~l~P 155 (286)
T d1tisa_ 81 IQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDFG-----GVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPP 155 (286)
T ss_dssp SSSCCTTHHHHTTTTGGGTCCTTBCCSCHHHHHHCBT-----TBCHHHHHHHHHHHSTTCSCCBCCCCCGGGGGGCSSCC
T ss_pred HCCCCCCCCCCCCCCCCCCCCHHHHCCCCHHHHCCCC-----CHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHCCCCCC
T ss_conf 0476545421230001123300231443101103466-----21499999999740855441034417888961456776
Q ss_pred CCCCEEEEECCCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCC
Q ss_conf 35402466768805999972624402220216799999999999762242111135227302100368999998336987
Q gi|254780956|r 146 CHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPR 225 (264)
Q Consensus 146 C~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~ 225 (264)
||..+||+|++|+|+|+++|||||+++|+|||+++|++|+++||+.||++||+|+|++||+|||+||+|+++|||+|+|+
T Consensus 156 C~~~~qf~v~~~~L~~~~~qRS~D~~lg~p~Ni~~~~~L~~~iA~~~g~~~G~~~~~~~~~HIY~~h~~~~~eqL~R~p~ 235 (286)
T d1tisa_ 156 CHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235 (286)
T ss_dssp SEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEEEEEESSCCTTTGGGSSCCCC
T ss_pred CCHHHHHHCCCCCEEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEEHHHHHHHHHHHCCCCC
T ss_conf 42232100454515799950300110044189999999999999876004101368726368638689999999667998
Q ss_pred CCCEEEECC------------CCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 687799648------------868711262033799768768887875569
Q gi|254780956|r 226 TLPQMIINP------------NIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264 (264)
Q Consensus 226 ~~P~L~i~~------------~~~~i~d~~~eDf~L~~Y~~hp~Ik~~mAV 264 (264)
++|+|+|++ ++++++++++|||+|+||+|||+|||||||
T Consensus 236 ~~P~l~i~~~~~~~~~~~~~~~~~~i~~~~~~Df~L~~Y~~hp~Ik~~maV 286 (286)
T d1tisa_ 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286 (286)
T ss_dssp SCCCCEECCCCGGGGGSCHHHHHHHHHTCCGGGEECSSCCCCCCCCCCCCC
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCHHCCCHHHEEEECCCCCCCCCCCCCC
T ss_conf 897068537876543222354445040498216689796679887725069
No 9
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]}
Probab=100.00 E-value=0 Score=520.70 Aligned_cols=216 Identities=24% Similarity=0.306 Sum_probs=201.9
Q ss_pred CHHHHHHHHHHHHCCCEECCCCCCCEEEEEECEEEEECCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHH
Q ss_conf 95799999999863926037998534777612046442369810464202268899999998536664688864003213
Q gi|254780956|r 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIW 80 (264)
Q Consensus 1 m~qYl~l~~~il~~G~~~~dRtG~~t~s~fg~~~~~dl~~gfPllTtkk~~~k~~i~EllW~l~G~tn~~~l~~~~~~iW 80 (264)
++.|.+.+..+|+||+++.||||++|+|+||+++++|++++||++|||+ +++||+|||+||||+++|.+++++||
T Consensus 8 ~~~~~~~l~~~l~~g~~~~drtG~~T~~i~g~~~~~d~~~~fp~~ttk~-----i~~EllWfl~Gstni~~L~~~~~~iW 82 (241)
T d1b5ea_ 8 VEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEY-----IQRELEWYKSKSLFVKDIPGETPKIW 82 (241)
T ss_dssp HHHHHHHHHHHHHTTCCEECTTSCEEEEEEEEEEECCSSCSSSCCCHHH-----HHHHHHHHHHTCSBGGGSSSSCCHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCHHH-----HHHHHHHHHHCCCCHHHHHHCCHHHH
T ss_conf 9999999999997798315899997505274699985776778676367-----99999999818985565543141477
Q ss_pred HHHHHHHCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCHH-----HHHHCCCCCCCCCEEEEEC
Q ss_conf 56542100138766201000367753268899999999980885236777516988-----8320242113540246676
Q gi|254780956|r 81 DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVA-----LIDKMALPPCHCLFQFYVD 155 (264)
Q Consensus 81 d~~a~~~g~lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~sRR~i~~~wnp~-----~~~~~~lpPC~~~~qf~v~ 155 (264)
|+||+++|++||+||+|| |. +.++||+++||++||+||+|||+|+++|||+ +.++|++||||.++||+|+
T Consensus 83 d~~a~~~G~lg~~YG~r~--~~---~~~~dQi~~vi~~Lk~nP~SRR~ii~~wnP~~~~~~~~~~~~lpPC~~~~qF~V~ 157 (241)
T d1b5ea_ 83 QQVASSKGEINSNYGWAI--WS---EDNYAQYDMCLAELGQNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIR 157 (241)
T ss_dssp HHHSCTTSBCSCCHHHHH--HC---GGGTCHHHHHHHHHHHCTTCSCCEEECCCTTHHHHTTGGGCCCCCCEEEEEEEEE
T ss_pred HHHHCCCCCCCCEEEEEE--CC---CCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHCCCCCCEEEEEEEEEC
T ss_conf 887222686311112332--27---7442279999999985998664599970675444310210345541358999984
Q ss_pred CCEEEEEEEECCCCHHHHCCHHHHHHHHHHHHHHHHHC-------CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCC
Q ss_conf 88059999726244022202167999999999997622-------421111352273021003689999983369876
Q gi|254780956|r 156 NGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIG-------FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRT 226 (264)
Q Consensus 156 ~g~L~~~~~qRS~D~~lG~pfNi~~y~lL~~~iA~~~g-------l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~ 226 (264)
+|+|+|+++|||+|+|+|+|||||+|++|+++||+.++ ++||+|+|++||+|||+||+|+|++++++.+..
T Consensus 158 ~gkL~~~~~qRS~D~~lG~p~Nia~~~~Ll~~~a~~l~~~~~~~~l~~G~~~h~~gd~HIY~nh~~~v~~~~~~~~~~ 235 (241)
T d1b5ea_ 158 DKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGETH 235 (241)
T ss_dssp TTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCEEEEEEEEEEEEEEEGGGHHHHHHHHHHCCSC
T ss_pred CCEEEEEEEEECCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECHHHHHHHHHHHHHCCCC
T ss_conf 877999998303431003753799999999999999646665577403599999887998577799999998743132
No 10
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.08 E-value=11 Score=15.90 Aligned_cols=49 Identities=18% Similarity=0.249 Sum_probs=38.2
Q ss_pred HHHHHC-CCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCC
Q ss_conf 997622-42111135227302100368999998336987687799648868
Q gi|254780956|r 188 LASVIG-FQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIV 237 (264)
Q Consensus 188 iA~~~g-l~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~ 237 (264)
.|..+| +.+|+.+..+++.-+-.-..+.+.+.|+..+-. -+|.|-|..+
T Consensus 37 ~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~-v~L~i~p~~~ 86 (88)
T d1kwaa_ 37 MIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGS-ITFKIVPSYR 86 (88)
T ss_dssp HHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEE-EEEEEECCCC
T ss_pred HHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCC-EEEEEEECCC
T ss_conf 8998199766759899999997799799999999769996-9999982776
No 11
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}
Probab=38.69 E-value=11 Score=15.86 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=35.3
Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf 976224211113522730210036899999833698768779964886871
Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDL 239 (264)
Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~~~~~i 239 (264)
|...|+++|+.+..+++.-|+ .++++.+.+++.+.+ =.|.|.++-+.+
T Consensus 38 A~~aGl~~GDvI~~ing~~v~--~~~~~~~~l~~~~~~-v~l~v~R~~~~~ 85 (88)
T d1ky9b2 38 AAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSV-LALNIQRGDSTI 85 (88)
T ss_dssp TGGGTCCSSCEEEEETTEECS--SHHHHHHHTTTCCSC-CCEEEESSSCEE
T ss_pred HHHCCCCCCCEEEEECCEECC--CHHHHHHHHHHCCCE-EEEEEEECCEEE
T ss_conf 998499888699999998858--999999999738997-999999999999
No 12
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.96 E-value=12 Score=15.79 Aligned_cols=46 Identities=17% Similarity=0.230 Sum_probs=35.4
Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 9976224211113522730210036899999833698768779964
Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264)
Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264)
.|...|+++|+.+..+...-+-.-..+++...|+..|-..-+|.+.
T Consensus 37 pA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~ 82 (85)
T d1w9ea1 37 PASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIR 82 (85)
T ss_dssp HHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEE
T ss_pred HHHHCCCCCCCEEEEECCEEECCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf 8999499875499999999957899999999986199987999996
No 13
>d1zd0a1 d.329.1.1 (A:9-144) Hypothetical protein PF0523 {Pyrococcus furiosus [TaxId: 2261]}
Probab=35.32 E-value=8.6 Score=16.61 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=24.3
Q ss_pred EEHHHHHHHHHHHHHHCCCCCHHH-HHHHCCC
Q ss_conf 202268899999998536664688-8640032
Q gi|254780956|r 48 KKVHWKSVVHELLWFLRGDSNVSY-LHRHGVS 78 (264)
Q Consensus 48 kk~~~k~~i~EllW~l~G~tn~~~-l~~~~~~ 78 (264)
.++-.|++-.|++.++||++++.. |+.+|++
T Consensus 58 g~~~art~~~Eil~~lS~~~~I~eA~~~fGi~ 89 (136)
T d1zd0a1 58 GRSIAKTVPGEILVRLSGNRQIKEAIKKVGAK 89 (136)
T ss_dssp TCCSSSSHHHHHHHHHHTCSSHHHHHHHHBCC
T ss_pred CCCCCCCCCHHHHHHHCCCCCHHHHHHHHCCC
T ss_conf 98442882233322326625299999983889
No 14
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=27.89 E-value=8.3 Score=16.69 Aligned_cols=45 Identities=27% Similarity=0.457 Sum_probs=29.9
Q ss_pred CCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC
Q ss_conf 38766201000367753268899999999980885------236777516988832024
Q gi|254780956|r 90 LGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA 142 (264)
Q Consensus 90 lg~~YG~qwR~~~~~~~~~~DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~ 142 (264)
+-.-+|.+.|+. |-=....+++++||+ +|-+|.++|..-|.++|+
T Consensus 41 ~K~fqGK~IRs~--------~dAl~s~eK~~~~lnkK~s~~Dr~AI~nAl~sid~~~ma 91 (197)
T d1cola_ 41 IKNFQGKTIRSF--------DDAMASLNKITANPAMKINKADRDALVNAWKHVDAQDMA 91 (197)
T ss_dssp HHTCTTCCCCCH--------HHHHHHHHHHHTSGGGCCCHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCCCCCCH--------HHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCHHHHH
T ss_conf 765058765779--------999999999984640322473399999999965899999
No 15
>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=27.61 E-value=17 Score=14.75 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=33.8
Q ss_pred HHHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 9976224211113522730210036899999833698768779964
Q gi|254780956|r 188 LASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264)
Q Consensus 188 iA~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264)
.|...||.+|+.+..+.+.-+-.-..+++.+.|+..+...=+|++-
T Consensus 48 pA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~l~v~ 93 (111)
T d1vaea_ 48 SASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93 (111)
T ss_dssp SHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEE
T ss_pred HHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCCEEEEEEE
T ss_conf 4895666766299999998758997999999997589982899997
No 16
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.54 E-value=20 Score=14.40 Aligned_cols=44 Identities=11% Similarity=0.162 Sum_probs=32.7
Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEEC
Q ss_conf 976224211113522730210036899999833698768779964
Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIIN 233 (264)
Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~ 233 (264)
|...|+++|+.+..+...-+..--.+++...++..|.+. +|.+.
T Consensus 31 A~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v-~L~v~ 74 (77)
T d2f5ya1 31 AERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEI-ILLVW 74 (77)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEE-EEEEE
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEE-EEEEE
T ss_conf 998699889999999999989999999999987799879-99999
No 17
>d1ciia1 f.1.1.1 (A:451-624) Colicin Ia {Escherichia coli [TaxId: 562]}
Probab=21.71 E-value=6 Score=17.54 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC
Q ss_conf 899999999980885------236777516988832024
Q gi|254780956|r 110 DQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA 142 (264)
Q Consensus 110 DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~ 142 (264)
|-=...++++++||+ +|-+|..+|..-+.++|+
T Consensus 41 ~dAl~s~eK~~~n~n~Kin~~Dr~AI~nAlk~~d~~~ma 79 (174)
T d1ciia1 41 EEALKTYEKYRADINKKINAKDRAAIAAALESVKLSDIS 79 (174)
T ss_dssp HHHHHHHHHTHHHHTTSSCSHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCHHHHH
T ss_conf 999999999883820213421699999999975899999
No 18
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.31 E-value=23 Score=14.01 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=34.0
Q ss_pred HHHHCCCCEEEEEECCCCEEEHHHHHHHHHHHCCCCCCCCEEEECC
Q ss_conf 9762242111135227302100368999998336987687799648
Q gi|254780956|r 189 ASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINP 234 (264)
Q Consensus 189 A~~~gl~~G~~~~~~~d~HIY~nH~~~vk~ql~R~p~~~P~L~i~~ 234 (264)
|...+|++|+.+..+.+.-+-.-..+++...|++.+. -=+|.|.+
T Consensus 43 A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~-~v~L~V~R 87 (94)
T d1vb7a_ 43 AEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSAS-PLRLQLDR 87 (94)
T ss_dssp HHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS-SEEEEEEC
T ss_pred HHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCC-EEEEEEEE
T ss_conf 6648778999999899999999989999999876998-49999998
No 19
>d1a87a_ f.1.1.1 (A:) Colicin N {Escherichia coli [TaxId: 562]}
Probab=20.18 E-value=18 Score=14.64 Aligned_cols=99 Identities=20% Similarity=0.277 Sum_probs=50.8
Q ss_pred EEEECCCCC-CEEEEEEHHHHHHHHHHHHHHCCCCCHHHHHH--HCCCH----HHHHHHHH------------CCCCCCC
Q ss_conf 464423698-10464202268899999998536664688864--00321----35654210------------0138766
Q gi|254780956|r 34 MRFDLSKGF-PLLTTKKVHWKSVVHELLWFLRGDSNVSYLHR--HGVSI----WDEWADKD------------GELGPIY 94 (264)
Q Consensus 34 ~~~dl~~gf-PllTtkk~~~k~~i~EllW~l~G~tn~~~l~~--~~~~i----Wd~~a~~~------------g~lg~~Y 94 (264)
||.+..+|= |.-.- -..|.++.|++-|-.......+... ..+.+ -++-+++- +++-.-+
T Consensus 66 m~v~y~n~k~p~~~~--~~vk~~v~~f~~~~kee~~~~Ek~alkdAve~ia~~~kkIsEk~G~Kyk~lA~eLA~~aKnfq 143 (297)
T d1a87a_ 66 MRVDYVNWKGPKYNN--KLVKRFVSQFLLFRKEEKEKNEKEALLKASELVSGMGDKLGEYLGVKYKNVAKEVANDIKNFH 143 (297)
T ss_dssp CEEEEESCCSCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTCC
T ss_pred HHEECCCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 412102577887795--069999999987747778778999998899999988899999998999999999998765404
Q ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHCCCC------HHHHHHHHCCHHHHHHCC
Q ss_conf 201000367753268899999999980885------236777516988832024
Q gi|254780956|r 95 GVQWRSWPDYDGNVIDQISSIVQSLRADPY------SRRHIVSAWNVALIDKMA 142 (264)
Q Consensus 95 G~qwR~~~~~~~~~~DQl~~vi~~Lk~np~------sRR~i~~~wnp~~~~~~~ 142 (264)
|.+.|+ +|-=-...++.++||+ +|-+|..+|..-|.++|+
T Consensus 144 GKkIRs--------vdeALks~eK~~~n~nkKinakDR~AI~nALksid~~~mA 189 (297)
T d1a87a_ 144 GRNIRS--------YNEAMASLNKVLANPKMKVNKSDKDAIVNAWKQVNAKDMA 189 (297)
T ss_dssp GGGCCC--------HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCC--------HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH
T ss_conf 774478--------9999999999860704115510799999999964899999
Done!