RPSBLAST alignment of GI: 254780956 and protein with PDBid: 3kjr
>3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics, slipchip,structural genomics, PSI-2, protein structure initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO} PDB: 3i3r_A* 3k2h_A* Length = 511
Score = 323 bits (828), Expect = 3e-89
Identities = 127/282 (45%), Positives = 174/282 (61%), Gaps = 20/282 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYLD+L V+ G + +RTG S FGYQMRFDLS+ FPLLTTKKV +S++ ELLW
Sbjct: 229 FQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLW 288
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRSWP------- 102
F++G +N + L V IW+ +D +LGPIYG QWR +
Sbjct: 289 FIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMH 348
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
DY G IDQ++ I+ ++ +P RR IV +WNV+ + KMALPPCHC FQFYV + KLSC
Sbjct: 349 ADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKLSC 408
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
++QRS D+ LG+PFNIASYS+LT M+A V G GEF+H L D H+Y +H + Q++
Sbjct: 409 MMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIA 468
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVS 263
R P P++ +NP+I ++ F +D + Y H I +S
Sbjct: 469 RIPHPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMS 510