RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780956|ref|YP_003065369.1| thymidylate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(264 letters)
>3jsu_A Dihydrofolate reductase-thymidylate synthase; rossmann fold,
oxidoreductase, transferase; HET: KA5 NDP UMP; 2.70A
{Plasmodium falciparum}
Length = 608
Score = 406 bits (1045), Expect = e-114
Identities = 124/282 (43%), Positives = 180/282 (63%), Gaps = 20/282 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
+QYL+++ ++ G+ + DRTGVG S FGY M+FDLS+ FPLLTTKK+ + ++ ELLW
Sbjct: 326 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 385
Query: 62 FLRGDSNVSYLHRHGVSIWDEWAD------------KDGELGPIYGVQWRS--------W 101
F+RG++N + L V IW+ + +LGPIYG QWR +
Sbjct: 386 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 445
Query: 102 PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
+Y+ +DQ+ +I+ ++ DP SRR ++ AWNV +D+MALPPCH L QFYV +GKLSC
Sbjct: 446 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 505
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
+YQRS D+ LG+PFNIASYS+ T M+A V Q +FIH LG+ H+YNNH + +QL+
Sbjct: 506 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 565
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVS 263
R P P + +NP+I ++ F DFT+++Y H I ++
Sbjct: 566 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 607
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex,
transferase; HET: UMP F89; 1.90A {Pneumocystis carinii}
SCOP: d.117.1.1 PDB: 1ci7_A*
Length = 297
Score = 382 bits (982), Expect = e-107
Identities = 131/291 (45%), Positives = 182/291 (62%), Gaps = 28/291 (9%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDL-SKGFPLLTTKKVHWKSVVHEL 59
QYL+L++++I G DR DRTG GT S F ++F L +K FPLLTTK+V + V+ EL
Sbjct: 7 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEEL 66
Query: 60 LWFLRGDSNVSYLHRHGVSIWDEWA------------DKDGELGPIYGVQWRSWP----- 102
LWF+RG+++ L + IWD ++G+LGPIYG QWR +
Sbjct: 67 LWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYID 126
Query: 103 ---DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYV----- 154
+Y G +DQ+++I+Q +R PY RR I+SAWN A ++KMALPPCH QFYV
Sbjct: 127 CKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSN 186
Query: 155 -DNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHF 213
+LSCQLYQRS D+ LG+PFNIASY+LLT M+A V G+FIH +GD H+Y +H
Sbjct: 187 NHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI 246
Query: 214 EQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
E QL+RSPR P + +N +I D+ F +DF +++Y P+ I K+S+
Sbjct: 247 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 297
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 374 bits (962), Expect = e-105
Identities = 128/284 (45%), Positives = 178/284 (62%), Gaps = 21/284 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYLDLL V++ G+ R +RTG+ T S FG MRFD+ + FPLLTTKKV +S+ EL+W
Sbjct: 238 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIW 297
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRSWP------- 102
F++GD+N ++L V IW K+ +LGPIYG QWR +
Sbjct: 298 FIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMH 357
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGK-LS 160
DY G +DQ++ ++++L+ +P RRHI++AWN + + +MALPPCH L Q+YV N LS
Sbjct: 358 DDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLS 417
Query: 161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220
C LYQRS D+ LG PFNIASY++LTMMLA V G++ GE +GD H+Y NH Q QL
Sbjct: 418 CNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL 477
Query: 221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
SR+PR PQ+ + ++ F++ED L Y P+ I ++V
Sbjct: 478 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 372 bits (955), Expect = e-104
Identities = 129/285 (45%), Positives = 173/285 (60%), Gaps = 21/285 (7%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKG-FPLLTTKKVHWKSVVHEL 59
QYL L+ +I+ G+ + DRTGVGT S FG QMRF L PLLTTK+V W+ V EL
Sbjct: 237 EEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEEL 296
Query: 60 LWFLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRS------- 100
LWFLRG++ L GV IWD+ + +LGP+YG QWR
Sbjct: 297 LWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTH 356
Query: 101 -WPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKL 159
+YDG +DQI +IV++L+ +P RR + +AWN + + +MALPPCH L QFYV NG+L
Sbjct: 357 HDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGEL 416
Query: 160 SCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQ 219
SC LYQRS D+ LG+PFNIASY+LLT+++A G + GE +HTLGD H+Y+NH E + Q
Sbjct: 417 SCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQ 476
Query: 220 LSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
L R PR P ++ L + D + Y P+ I K++V
Sbjct: 477 LKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 360 bits (924), Expect = e-100
Identities = 127/282 (45%), Positives = 174/282 (61%), Gaps = 20/282 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYLD+L V+ G + +RTG S FGYQMRFDLS+ FPLLTTKKV +S++ ELLW
Sbjct: 233 FQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLW 292
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRSWP------- 102
F++G +N + L V IW+ +D +LGPIYG QWR +
Sbjct: 293 FIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMH 352
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
DY G IDQ++ I+ ++ +P RR IV +WNV+ + KMALPPCHC FQFYV + KLSC
Sbjct: 353 ADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKLSC 412
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
++QRS D+ LG+PFNIASYS+LT M+A V G GEF+H L D H+Y +H + Q++
Sbjct: 413 MMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIA 472
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVS 263
R P P++ +NP+I ++ F +D + Y H I +S
Sbjct: 473 RIPHPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMS 514
>1hw4_A TS, thymidylate synthase; methyltransferase; HET: CME; 2.06A {Homo
sapiens} SCOP: d.117.1.1
Length = 355
Score = 357 bits (917), Expect = 2e-99
Identities = 130/283 (45%), Positives = 176/283 (62%), Gaps = 20/283 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYL ++H+++ G + DRTG GT S FG Q R+ L FPLLTTK+V WK V+ ELLW
Sbjct: 73 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLW 132
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADK------------DGELGPIYGVQWRSWP------- 102
F++G +N L GV IWD + +G+LGP+YG QWR +
Sbjct: 133 FIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDME 192
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
DY G +DQ+ ++ +++ +P RR I+ AWN + MALPPCH L QFYV N +LSC
Sbjct: 193 SDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSC 252
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
QLYQRSGD+ LG+PFNIASY+LLT M+A + G + G+FIHTLGD H+Y NH E +QL
Sbjct: 253 QLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ 312
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
R PR P++ I + + F+ EDF + Y PH I +++V
Sbjct: 313 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 355
>3ihh_A Tsase, TS, thymidylate synthase; protein-ligand complex,
methyltransferase, nucleotide biosynthesis; HET: UMP;
1.70A {Mus musculus} PDB: 3ihi_A 2tsr_A* 1rts_A* 2rd8_A*
2rda_A 1ypv_A* 1hw3_A* 2onb_A* 1ju6_A* 1juj_A* 3egy_X*
3ehi_X* 1hvy_A* 1hzw_A 1i00_A*
Length = 307
Score = 351 bits (901), Expect = 1e-97
Identities = 132/283 (46%), Positives = 177/283 (62%), Gaps = 20/283 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYL + H+++ G + DRTG GT S FG Q R+ L FPLLTTK+V WK V+ ELLW
Sbjct: 25 LQYLRQVEHILRCGFKKEDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLW 84
Query: 62 FLRGDSNVSYLHRHGVSIWDE------------WADKDGELGPIYGVQWRSWP------- 102
F++G +N L GV IWD A ++G+LGP+YG QWR +
Sbjct: 85 FIKGSTNAKELSSKGVRIWDANGSRDFLDSLGFSARQEGDLGPVYGFQWRHFGAEYKDMD 144
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
DY G +DQ+ ++ +++ +P RR I+ AWN + MALPPCH L QFYV NG+LSC
Sbjct: 145 SDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPPCHALCQFYVVNGELSC 204
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
QLYQRSGD+ LG+PFNIASY+LLT M+A + G Q G+F+HTLGD H+Y NH E +QL
Sbjct: 205 QLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQPGDFVHTLGDAHIYLNHIEPLKIQLQ 264
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
R PR P++ I + + F+ EDF + Y PH I +++V
Sbjct: 265 REPRPFPKLKILRKVETIDDFKVEDFQIEGYNPHPTIKMEMAV 307
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C*
1j3j_C* 3dg8_C* 3dga_C*
Length = 328
Score = 350 bits (898), Expect = 3e-97
Identities = 124/282 (43%), Positives = 180/282 (63%), Gaps = 20/282 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
+QYL+++ ++ G+ + DRTGVG S FGY M+FDLS+ FPLLTTKK+ + ++ ELLW
Sbjct: 46 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 105
Query: 62 FLRGDSNVSYLHRHGVSIWDEW------------ADKDGELGPIYGVQWRS--------W 101
F+RG++N + L V IW+ + +LGPIYG QWR +
Sbjct: 106 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 165
Query: 102 PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
+Y+ +DQ+ +I+ ++ DP SRR ++ AWNV +D+MALPPCH L QFYV +GKLSC
Sbjct: 166 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 225
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
+YQRS D+ LG+PFNIASYS+ T M+A V Q +FIH LG+ H+YNNH + +QL+
Sbjct: 226 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 285
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVS 263
R P P + +NP+I ++ F DFT+++Y H I ++
Sbjct: 286 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 327
>3dl5_A Dihydrofolate reductase, DHFR; enzyme active site mutant,
enzyme-ligand complex, , oxidoreductase; HET: UMP CB3
DHF NDP; 2.74A {Cryptosporidium hominis} PDB: 3dl6_A*
1qzf_A* 1sej_A* 2oip_A*
Length = 521
Score = 346 bits (889), Expect = 3e-96
Identities = 127/284 (44%), Positives = 178/284 (62%), Gaps = 21/284 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYLDLL V++ G+ R +RTG+ T S FG MRFD+ + FPLLTTKKV +S+ EL+W
Sbjct: 238 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVFIRSIFEELIW 297
Query: 62 FLRGDSNVSYLHRHGVSIWDEWAD------------KDGELGPIYGVQWRSWP------- 102
F++GD+N ++L V IW ++ +LGPIYG QWR +
Sbjct: 298 FIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMH 357
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGK-LS 160
DY G +DQ++ ++++L+ +P RRHI++AWN + + +MALPPCH L Q+YV N LS
Sbjct: 358 DDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLS 417
Query: 161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220
C LYQRS D+ LG PFNIASY++LTMMLA V G++ GE +GD H+Y NH Q QL
Sbjct: 418 CNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL 477
Query: 221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
SR+PR PQ+ + ++ F++ED L Y P+ I ++V
Sbjct: 478 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 521
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase,
nucleotide biosynthesis; 1.56A {Homo sapiens} PDB:
3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A
3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A
3h9k_A* 3hb8_A* 1ju6_A* 1juj_A* 3egy_X* 3ehi_X* ...
Length = 295
Score = 345 bits (885), Expect = 8e-96
Identities = 130/283 (45%), Positives = 176/283 (62%), Gaps = 20/283 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYL ++H+++ G + DRTG GT S FG Q R+ L FPLLTTK+V WK V+ ELLW
Sbjct: 13 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLW 72
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADK------------DGELGPIYGVQWRSW-------- 101
F++G +N L GV IWD + +G+LGP+YG QWR +
Sbjct: 73 FIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDME 132
Query: 102 PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
DY G +DQ+ ++ +++ +P RR I+ AWN + MALPPCH L QFYV N +LSC
Sbjct: 133 SDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSC 192
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
QLYQRSGD+ LG+PFNIASY+LLT M+A + G + G+FIHTLGD H+Y NH E +QL
Sbjct: 193 QLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ 252
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
R PR P++ I + + F+ EDF + Y PH I +++V
Sbjct: 253 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 295
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase,
methyltransferase, nucleot biosynthesis; HET: 7C1 UMP;
2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A*
1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A*
3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A*
1tsz_A 1tdb_A* 1tda_A* ...
Length = 316
Score = 341 bits (876), Expect = 9e-95
Identities = 144/314 (45%), Positives = 186/314 (59%), Gaps = 50/314 (15%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
YLDL + V+ G + DRT GT S FG+QMRFDLSKGFPLLTTKKV + + ELL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 61 WFLRGDSNVSYLHRHGVSIWD--------------------------------------- 81
WFL GD+N+ +L +H IWD
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 82 -----------EWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIV 130
+A K G+LG +YG QWR+W G+ IDQ+ +++ ++ PYSRR IV
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIV 182
Query: 131 SAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLAS 190
SAWN + MALPPCH L+QFYV++GKLS QLYQRS D+FLG+PFNIASY+LLT ++A
Sbjct: 183 SAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAH 242
Query: 191 VIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLR 250
G + GEFIHT GD HLY NH +Q QLSR+PR P + +NP+ D+ F +D L
Sbjct: 243 ECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLL 302
Query: 251 SYEPHAAILAKVSV 264
+Y+P+ AI A V+V
Sbjct: 303 NYDPYPAIKAPVAV 316
>1jmg_A Thymidylate synthase; transferase, methyltransferase; HET: UMP;
2.20A {Lactobacillus casei} SCOP: d.117.1.1 PDB: 1jmf_A*
1tvu_A* 1nje_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A*
1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A*
4tms_A 1jmi_A* 1tvw_A* 1njd_A* 1njc_A* ...
Length = 316
Score = 340 bits (873), Expect = 2e-94
Identities = 143/314 (45%), Positives = 185/314 (58%), Gaps = 50/314 (15%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
YLDL + V+ G + DRT GT S FG+QMRFDLSKGFPLLTTKKV + + ELL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 61 WFLRGDSNVSYLHRHGVSIW---------------------------------------- 80
WFL GD+N+ +L +H IW
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 81 ----------DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIV 130
D +A K G+LG +YG QWR+W G+ IDQ+ +++ ++ PYSRR IV
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIV 182
Query: 131 SAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLAS 190
SAWN + MALPPCH L+QFYV++GKLS QLYQRS D+FLG+PF IASY+LLT ++A
Sbjct: 183 SAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFGIASYALLTHLVAH 242
Query: 191 VIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLR 250
G + GEFIHT GD HLY NH +Q QLSR+PR P + +NP+ D+ F +D L
Sbjct: 243 ECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLL 302
Query: 251 SYEPHAAILAKVSV 264
+Y+P+ AI A V+V
Sbjct: 303 NYDPYPAIKAPVAV 316
>2h2q_A Bifunctional dihydrofolate reductase-thymidylate synthase;
bifunctional enzyme in complex with NADP and DUMP,
oxidoreductase, transferase; HET: NAP DU; 2.40A
{Trypanosoma cruzi} PDB: 3cl9_A* 3clb_A* 3hbb_A*
Length = 521
Score = 335 bits (860), Expect = 6e-93
Identities = 129/285 (45%), Positives = 173/285 (60%), Gaps = 21/285 (7%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKG-FPLLTTKKVHWKSVVHEL 59
QYL L+ +I+ G+ + DRTGVGT S FG QMRF L PLLTTK+V W+ V EL
Sbjct: 237 EEQYLSLVDRIIREGNVKHDRTGVGTLSIFGAQMRFSLRNNRLPLLTTKRVFWRGVCEEL 296
Query: 60 LWFLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRS------- 100
LWFLRG++ L GV IWD+ + +LGP+YG QWR
Sbjct: 297 LWFLRGETYAKKLSDKGVHIWDDNGSRAFLDSRGLTEYEEMDLGPVYGFQWRHFGAAYTH 356
Query: 101 -WPDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKL 159
+YDG +DQI +IV++L+ +P RR + +AWN + + +MALPPCH L QFYV NG+L
Sbjct: 357 HDANYDGQGVDQIKAIVETLKTNPDDRRMLFTAWNPSALPRMALPPCHLLAQFYVSNGEL 416
Query: 160 SCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQ 219
SC LYQRS D+ LG+PFNIASY+LLT+++A G + GE +HTLGD H+Y+NH E + Q
Sbjct: 417 SCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLRPGELVHTLGDAHVYSNHVEPCNEQ 476
Query: 220 LSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
L R PR P ++ L + D + Y P+ I K++V
Sbjct: 477 LKRVPRAFPYLVFRREREFLEDYEEGDMEVIDYAPYPPISMKMAV 521
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural
center for infectious disease, brucellosis, orchitis,
epididymitis; 2.20A {Brucella melitensis}
Length = 360
Score = 326 bits (838), Expect = 2e-90
Identities = 176/264 (66%), Positives = 219/264 (82%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
M YLDLL+HV+ G DR DRTG GTRS FGYQMRFDL +GFP+LTTKK+H +S++HELL
Sbjct: 97 MRTYLDLLQHVLDHGVDRDDRTGTGTRSVFGYQMRFDLEEGFPVLTTKKLHLRSIIHELL 156
Query: 61 WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120
WFL+GD+N++YL +GV+IWDEWAD++G+LGP+YG QWRSWP DG IDQI+++++ L
Sbjct: 157 WFLKGDTNIAYLKENGVTIWDEWADENGDLGPVYGYQWRSWPAPDGRHIDQIANLLKMLH 216
Query: 121 ADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIAS 180
+P SRR IVSAWN AL+D+MALPPCHCLFQFYV NG+LSCQLYQRS D+FLG+PFNIAS
Sbjct: 217 TNPQSRRLIVSAWNPALVDEMALPPCHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIAS 276
Query: 181 YSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240
Y+LLTMM+A V G + GEFIHTLGD H+Y+NHFEQA LQL+R+P+ LP M INP++ DL
Sbjct: 277 YALLTMMIAQVTGLKPGEFIHTLGDAHIYSNHFEQARLQLTRTPKKLPVMHINPDVKDLF 336
Query: 241 SFRYEDFTLRSYEPHAAILAKVSV 264
+FR+EDF L YE I A ++V
Sbjct: 337 AFRFEDFRLDGYEADPTIKAPIAV 360
>3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics,
slipchip,structural genomics, PSI-2, protein structure
initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO}
PDB: 3i3r_A* 3k2h_A*
Length = 511
Score = 323 bits (828), Expect = 3e-89
Identities = 127/282 (45%), Positives = 174/282 (61%), Gaps = 20/282 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYLD+L V+ G + +RTG S FGYQMRFDLS+ FPLLTTKKV +S++ ELLW
Sbjct: 229 FQYLDILADVLSHGVLKPNRTGTDAYSKFGYQMRFDLSRSFPLLTTKKVALRSIIEELLW 288
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRSWP------- 102
F++G +N + L V IW+ +D +LGPIYG QWR +
Sbjct: 289 FIKGSTNGNDLLAKNVRIWELNGRRDFLDKNGFTDREEHDLGPIYGFQWRHFGAEYLDMH 348
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
DY G IDQ++ I+ ++ +P RR IV +WNV+ + KMALPPCHC FQFYV + KLSC
Sbjct: 349 ADYTGKGIDQLAEIINRIKTNPNDRRLIVCSWNVSDLKKMALPPCHCFFQFYVSDNKLSC 408
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
++QRS D+ LG+PFNIASYS+LT M+A V G GEF+H L D H+Y +H + Q++
Sbjct: 409 MMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLGLGEFVHNLADAHIYVDHVDAVTTQIA 468
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVS 263
R P P++ +NP+I ++ F +D + Y H I +S
Sbjct: 469 RIPHPFPRLRLNPDIRNIEDFTIDDIVVEDYVSHPPIPMAMS 510
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP,
antifolate, high-resolution, ternary complex, beta
sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A
{Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A*
1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A*
1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A*
3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Length = 264
Score = 305 bits (783), Expect = 6e-84
Identities = 153/264 (57%), Positives = 201/264 (76%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
M QYL+L++ V+ G+ + DRTG GT S FG+QMRF+L GFPL+TTK+ H +S++HELL
Sbjct: 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60
Query: 61 WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120
WFL+GD+N++YLH + V+IWDEWAD++G+LGP+YG QWR+WP DG IDQI++++ L+
Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120
Query: 121 ADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIAS 180
DP SRR IVSAWNV +DKMAL PCH FQFYV +GKLSCQLYQRS DVFLG+PFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180
Query: 181 YSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240
Y+LL M+A + G+F+ T GD HLY+NH +Q LQLSR PR LP++II +
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240
Query: 241 SFRYEDFTLRSYEPHAAILAKVSV 264
+R+EDF + Y+PH I A V++
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide
biosynthesis, transferase; HET: UMP CB3; 2.08A
{Filobasidiella neoformans}
Length = 317
Score = 293 bits (751), Expect = 3e-80
Identities = 120/296 (40%), Positives = 164/296 (55%), Gaps = 34/296 (11%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDLSKG-FPLLTTKKVHWKSVVHEL 59
+QYLDL+R +I G R DRTG GT + F RF L+ PLLTTK+V + V+ EL
Sbjct: 21 YQYLDLIRRIINVGEVRPDRTGTGTVALFAPPSFRFSLADNTLPLLTTKRVFLRGVIAEL 80
Query: 60 LWFLRGDSNVSYLHRHGVSIWDEWAD------------KDGELGPIYGVQWRSWP----- 102
LWF+ G ++ L GV IWD ++G+LGP+YG QWR +
Sbjct: 81 LWFVSGCTDAKMLSSQGVGIWDGNGSKEFLEKVGLGHRREGDLGPVYGFQWRHFGAEYTD 140
Query: 103 ---DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYV----- 154
DY G +DQ+ ++ +++ +P RR I+SAWN + MALPPCH QF+V
Sbjct: 141 ADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPPCHMFCQFFVSLPPA 200
Query: 155 ----DNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYN 210
KLSC +YQRS D+ LG+PFNIASY+LLT M+A + + EFI +GD H+Y
Sbjct: 201 DSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTEPHEFILQMGDAHVYR 260
Query: 211 NHFEQADLQLSRSPRTLPQMIINP---NIVDLLSFRYEDFTLRSYEPHAAILAKVS 263
+H E QL R PR P++ I D+ F+ EDF + Y+P I K+S
Sbjct: 261 DHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVEDFVVEGYKPWGKIDMKMS 316
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode,
methyltransferase, nucleotide biosynthesis, transferase;
2.20A {Encephalitozoon cuniculi gb-m1}
Length = 294
Score = 274 bits (702), Expect = 1e-74
Identities = 138/285 (48%), Positives = 188/285 (65%), Gaps = 22/285 (7%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKG-FPLLTTKKVHWKSVVHEL 59
HQYLDL++H+++ G+ R DRTG GT S FG MRF L FPLLTT++V ++ VV EL
Sbjct: 9 EHQYLDLVKHILENGARRMDRTGTGTLSVFGATMRFSLEDNTFPLLTTRRVFYRGVVEEL 68
Query: 60 LWFLRGDSNVSYLHRHGVSIWDEWADK-----------DGELGPIYGVQWRSWP------ 102
L+FLRG+++ L + GV IW++ K +G+LGPIYG QWR +
Sbjct: 69 LFFLRGETDSKVLEKKGVRIWEKNGAKQFLQSVGIDREEGDLGPIYGFQWRHFGARYETS 128
Query: 103 --DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLS 160
Y+G +DQI+S + ++RA+P SRR +VSAWN + MALPPCH LFQF V +GKLS
Sbjct: 129 ASSYEGKGVDQIASAIAAIRANPASRRIVVSAWNPTDLGSMALPPCHVLFQFNVTDGKLS 188
Query: 161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220
C +YQRSGD+ LG+PFNIASYSLLT+++A + G Q GEF+H LGD H+Y +H + Q+
Sbjct: 189 CAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQPGEFVHFLGDAHVYLDHVDSLRQQI 248
Query: 221 SRSPRTLPQMIINP--NIVDLLSFRYEDFTLRSYEPHAAILAKVS 263
R PR P++ ++P + F+YEDF L Y+PH AI +S
Sbjct: 249 QRPPRAFPKLFVSPKGPRTEPEHFQYEDFELVGYDPHPAIKMNMS 293
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A
{Enterobacteria phage T4} SCOP: d.117.1.1
Length = 286
Score = 253 bits (646), Expect = 4e-68
Identities = 120/291 (41%), Positives = 168/291 (57%), Gaps = 32/291 (10%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
M QY DL++ + + G + DRTG GT + FG ++R+DL+KGFP +TTKK+ WK+ + EL+
Sbjct: 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELI 60
Query: 61 WFLRGDSNVSYL-------HRHGVSIWDEWAD--------KDGELGPIYGVQWRSWPDYD 105
WFL G +NV+ L G ++WDE + GELGPIYG QWR +
Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDF---- 116
Query: 106 GNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQ 165
+DQI ++ ++ P RR IVSAWN A + MALPPCH +QF V NG L Q YQ
Sbjct: 117 -GGVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRNGYLDLQWYQ 175
Query: 166 RSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPR 225
RS DVFLG+PFNIASY+ L ++A + G+ I + G+ H+Y NH EQ L R P+
Sbjct: 176 RSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235
Query: 226 TLPQMIIN------------PNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
L +++I+ + +L R +DF L +Y H I K++V
Sbjct: 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A
{Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A
1bsp_A 1b02_A*
Length = 278
Score = 238 bits (609), Expect = 7e-64
Identities = 103/275 (37%), Positives = 152/275 (55%), Gaps = 13/275 (4%)
Query: 2 HQYLDLLRHVIKFGSD----------RRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVH 51
QY +++ +I G D T T S QMRFD S+ P+LTTKKV
Sbjct: 5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNSE-VPILTTKKVA 63
Query: 52 WKSVVHELLWFLRGDSN-VSYLHRHGVSIWDEWADKDGELGPIYG-VQWRSWPDYDGNVI 109
WK+ + ELLW + SN V+ L+ GV IWD+W +DG +G YG + +G +
Sbjct: 64 WKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKV 123
Query: 110 DQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGD 169
DQ+ ++ L+ +P SRRHI WN +D MAL PC Q+YV +GKL ++ RS D
Sbjct: 124 DQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSND 183
Query: 170 VFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQ 229
+ LG PFN+ Y++L M+A V G++ GE+I +GD H+Y H + +Q+ R P+
Sbjct: 184 MALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE 243
Query: 230 MIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
+ INP + D F +DF L +Y+ +L +V+V
Sbjct: 244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing
complex; HET: DCM; 1.60A {Bacteriophage T4} SCOP:
d.117.1.1 PDB: 1b49_A* 1b5d_A*
Length = 246
Score = 229 bits (585), Expect = 5e-61
Identities = 52/241 (21%), Positives = 83/241 (34%), Gaps = 22/241 (9%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
+ + L +K D+TGV T G D F L + + EL
Sbjct: 8 VEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEYI-----QRELE 62
Query: 61 WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120
W+ V + IW + A GE+ YG S +Y Q + L
Sbjct: 63 WYKSKSLFVKDIPGETPKIWQQVASSKGEINSNYGWAIWSEDNYA-----QYDMCLAELG 117
Query: 121 ADPYSRRHIVSAWN-----VALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIP 175
+P SRR I+ D M+ C Q+ + + K++ + RS DV G
Sbjct: 118 QNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFR 177
Query: 176 FNIASYSLLTMMLA-------SVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLP 228
+ A + L S ++ G I +G +H+Y+ HF D +
Sbjct: 178 NDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGETHIS 237
Query: 229 Q 229
+
Sbjct: 238 K 238
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.9 bits (106), Expect = 2e-05
Identities = 41/327 (12%), Positives = 95/327 (29%), Gaps = 127/327 (38%)
Query: 3 QYLDLLRHVIK-FGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL- 60
Q+ +L + F + + L +H ++ +LL
Sbjct: 79 QFDQVLNLCLTEF------------ENCY--------------LEGNDIH--ALAAKLLQ 110
Query: 61 -----------WF-----LRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQ------- 97
R + + + +++ + + +L I+G Q
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 98 ------WRSWPDYDGNVIDQISSIVQSLRADPYSRRHI------VSAWNVALIDKMALPP 145
++++ G++I + + L + + W L + P
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW---LENPSNTPD 227
Query: 146 CHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFI----- 200
Y+ + +SC L +G+ +A Y ++ A ++GF GE
Sbjct: 228 KD-----YLLSIPISCPL--------IGV-IQLAHY----VVTAKLLGFTPGELRSYLKG 269
Query: 201 ---HTLGDV------------HLYNNHFEQADLQL-----SRSPRTLPQMIINPNIVD-- 238
H+ G V + + +A + + R P + P+I++
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVS-VRKA-ITVLFFIGVRCYEAYPNTSLPPSILEDS 327
Query: 239 ----------LLSFRYEDFTLRSYEPH 255
+LS + T + +
Sbjct: 328 LENNEGVPSPMLSIS--NLTQEQVQDY 352
Score = 33.8 bits (77), Expect = 0.045
Identities = 27/120 (22%), Positives = 41/120 (34%), Gaps = 45/120 (37%)
Query: 2 H-QYL---------DLLRHVIKFGSDRRD-RTGV-GTRSTFGYQMRFDLSKG-----FPL 44
H L DL+++ + F + D + V T G +R LS
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAK--DIQIPVYDTFD--GSDLR-VLSGSISERIVDC 482
Query: 45 LTTKKVHWKSVV-----HELLWFLRG-DSNVSYL-HRHGVSIWDEWADKDGELGPIYGVQ 97
+ V W++ H +L F G S + L HR +KDG GV+
Sbjct: 483 IIRLPVKWETTTQFKATH-ILDFGPGGASGLGVLTHR----------NKDG-----TGVR 526
Score = 27.6 bits (61), Expect = 3.3
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 29/85 (34%)
Query: 72 LHRHGVSIWDEWADKDGELG-PIY----GVQWRSWPDYDGNVIDQISSIVQSLRADPYSR 126
L ++ V + KD + P+Y G R G++ ++I + L
Sbjct: 443 LVKNNV----SFNAKD--IQIPVYDTFDGSDLRV---LSGSISERIVDCIIRLPVK---- 489
Query: 127 RHIVSAWNVALIDKMALPPCHCL-F 150
W H L F
Sbjct: 490 ------WETTT----QFKATHILDF 504
Score = 26.8 bits (59), Expect = 5.1
Identities = 15/86 (17%), Positives = 24/86 (27%), Gaps = 23/86 (26%)
Query: 186 MMLASVIGFQ--YGEFIHTLGDVHLYNNHFEQADLQLSRS-PRTLPQMIINPN------- 235
M S +G H L + F A QL + LP+ P
Sbjct: 1 MDAYSTRPLTLSHGSLEHVL---LVPTASFFIAS-QLQEQFNKILPE----PTEGFAADD 52
Query: 236 ----IVDLLSFRYEDFTLRSYEPHAA 257
+L+ ++ + EP
Sbjct: 53 EPTTPAELVG-KFLGYVSSLVEPSKV 77
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis S2}
Length = 701
Score = 28.8 bits (64), Expect = 1.2
Identities = 18/138 (13%), Positives = 39/138 (28%), Gaps = 6/138 (4%)
Query: 108 VIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQ--FYVDNGKLSCQLYQ 165
I+ + + + Y IV + I K P + FY+ G +
Sbjct: 70 TIENLRQAYLRMGFEEYINPVIVDERD---IYKQFGPEAMAVLDRCFYLA-GLPRPDVGL 125
Query: 166 RSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPR 225
+ I + + G++ G + + N +++ L
Sbjct: 126 SDEKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILED 185
Query: 226 TLPQMIINPNIVDLLSFR 243
P+ + L+ R
Sbjct: 186 VFPEFKDLTAVSSKLTLR 203
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase;
1.90A {Escherichia coli} PDB: 1ujb_A
Length = 161
Score = 28.3 bits (62), Expect = 1.9
Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 5/157 (3%)
Query: 71 YLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIV 130
++ RHG + D +D L + R ++ +I ++ S R
Sbjct: 4 FIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVEIERVLVS-----PFLRAEQ 58
Query: 131 SAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLAS 190
+ V + + L Q + + I+ L+ ++A
Sbjct: 59 TLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVASVLVISHLPLVGYLVAE 118
Query: 191 VIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTL 227
+ + T + + SP L
Sbjct: 119 LCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNL 155
>3oiq_A Cell division control protein 13; OB fold, dimer, dimeric complex,
protein binding; HET: DNA; 2.40A {Saccharomyces
cerevisiae} PDB: 3oip_A 3nws_A 3nwt_A
Length = 233
Score = 28.0 bits (61), Expect = 2.0
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 5/109 (4%)
Query: 115 IVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQF-YVDNGKLSCQLYQRSGDVFLG 173
+ S + Y + IV VAL+ + L CL F + Q Q
Sbjct: 8 VSSSKDFEGYPSKAIVPVQFVALLTSIHLTETKCLLGFSNFERRGDQSQEDQYLIK---- 63
Query: 174 IPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSR 222
+ F L + S++ + + L + D+ L R
Sbjct: 64 LKFKDRGSERLARITISLLCQYFDIELPDLDSDSGASPTVILRDIHLER 112
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger,
propeller cluster, helical repeats, cullin repeats,
protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP:
a.4.5.34 a.118.17.1 e.40.1.1
Length = 759
Score = 26.2 bits (57), Expect = 7.1
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 198 EFIHTLGDVHLYNNHFEQADLQLSRS 223
+ L D+ +Y + FE L+ +
Sbjct: 216 SLLGMLSDLQVYKDSFELKFLEETNC 241
>2qn0_A Neurotoxin; botulism, snares, protease; 1.75A {Clostridium
botulinum} PDB: 3deb_A
Length = 430
Score = 26.4 bits (58), Expect = 7.5
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 177 NIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNI 236
L+ + I F +T + ++ F D++ + + INP++
Sbjct: 100 REIGEELIYRLSTD-IPFPGNN--NTPINTFDFDVDFNSVDVKTRQGNNWVKTGSINPSV 156
Query: 237 V 237
+
Sbjct: 157 I 157
>2j6a_A Protein TRM112; translation termination, methyltransferase,
transferase, ERF1, nuclear protein, protein methylation;
1.7A {Saccharomyces cerevisiae}
Length = 141
Score = 25.9 bits (57), Expect = 8.7
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 147 HCLFQFYVDNGKLSCQLYQRSGDVFLGIP 175
L Q + G++ C+ + GIP
Sbjct: 98 TLLLQTSIAEGEMKCRNCGHIYYIKNGIP 126
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.325 0.140 0.449
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,430,271
Number of extensions: 110198
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 38
Length of query: 264
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 173
Effective length of database: 3,487,026
Effective search space: 603255498
Effective search space used: 603255498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.1 bits)