RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780956|ref|YP_003065369.1| thymidylate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(264 letters)
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli
[TaxId: 562]}
Length = 264
Score = 301 bits (772), Expect = 4e-83
Identities = 153/264 (57%), Positives = 201/264 (76%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
M QYL+L++ V+ G+ + DRTG GT S FG+QMRF+L GFPL+TTK+ H +S++HELL
Sbjct: 1 MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPLVTTKRCHLRSIIHELL 60
Query: 61 WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120
WFL+GD+N++YLH + V+IWDEWAD++G+LGP+YG QWR+WP DG IDQI++++ L+
Sbjct: 61 WFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWPTPDGRHIDQITTVLNQLK 120
Query: 121 ADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIAS 180
DP SRR IVSAWNV +DKMAL PCH FQFYV +GKLSCQLYQRS DVFLG+PFNIAS
Sbjct: 121 NDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIAS 180
Query: 181 YSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240
Y+LL M+A + G+F+ T GD HLY+NH +Q LQLSR PR LP++II +
Sbjct: 181 YALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHLQLSREPRPLPKLIIKRKPESIF 240
Query: 241 SFRYEDFTLRSYEPHAAILAKVSV 264
+R+EDF + Y+PH I A V++
Sbjct: 241 DYRFEDFEIEGYDPHPGIKAPVAI 264
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 298 bits (765), Expect = 2e-82
Identities = 143/314 (45%), Positives = 185/314 (58%), Gaps = 50/314 (15%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
YLDL + V+ G + DRT GT S FG+QMRFDLSKGFPLLTTKKV + + ELL
Sbjct: 3 EQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELL 62
Query: 61 WFLRGDSNVSYLHRHGVSIW---------------------------------------- 80
WFL GD+N+ +L +H IW
Sbjct: 63 WFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEM 122
Query: 81 ----------DEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLRADPYSRRHIV 130
D +A K G+LG +YG QWR+W G+ IDQ+ +++ ++ PYSR IV
Sbjct: 123 AKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRALIV 182
Query: 131 SAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLAS 190
SAWN + MALPPCH L+QFYV++GKLS QLYQRS D+FLG+PFNIASY+LLT ++A
Sbjct: 183 SAWNPEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAH 242
Query: 191 VIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLR 250
G + GEFIHT GD HLY NH +Q QLSR+PR P + +NP+ D+ F +D L
Sbjct: 243 ECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDFDMKDIKLL 302
Query: 251 SYEPHAAILAKVSV 264
+Y+P+ AI A V+V
Sbjct: 303 NYDPYPAIKAPVAV 316
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 287 bits (735), Expect = 7e-79
Identities = 131/291 (45%), Positives = 182/291 (62%), Gaps = 28/291 (9%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFG-YQMRFDL-SKGFPLLTTKKVHWKSVVHEL 59
QYL+L++++I G DR DRTG GT S F ++F L +K FPLLTTK+V + V+ EL
Sbjct: 5 QQYLNLVQYIINHGEDRPDRTGTGTLSVFAPSPLKFSLRNKTFPLLTTKRVFIRGVIEEL 64
Query: 60 LWFLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRSWP----- 102
LWF+RG+++ L + IWD ++ G+LGPIYG QWR +
Sbjct: 65 LWFIRGETDSLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYID 124
Query: 103 ---DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYV----- 154
+Y G +DQ+++I+Q +R PY RR I+SAWN A ++KMALPPCH QFYV
Sbjct: 125 CKTNYIGQGVDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSN 184
Query: 155 -DNGKLSCQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHF 213
+LSCQLYQRS D+ LG+PFNIASY+LLT M+A V G+FIH +GD H+Y +H
Sbjct: 185 NHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDPGDFIHVMGDCHIYKDHI 244
Query: 214 EQADLQLSRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
E QL+RSPR P + +N +I D+ F +DF +++Y P+ I K+S+
Sbjct: 245 EALQQQLTRSPRPFPTLSLNRSITDIEDFTLDDFNIQNYHPYETIKMKMSI 295
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 285 bits (731), Expect = 2e-78
Identities = 128/284 (45%), Positives = 178/284 (62%), Gaps = 21/284 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYLDLL V++ G+ R +RTG+ T S FG MRFD+ + FPLLTTKKV +S+ EL+W
Sbjct: 6 FQYLDLLSRVLENGAYRENRTGISTYSIFGQMMRFDMRESFPLLTTKKVAIRSIFEELIW 65
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADKD------------GELGPIYGVQWRSWP------- 102
F++GD+N ++L V IW K+ +LGPIYG QWR +
Sbjct: 66 FIKGDTNGNHLIEKKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMH 125
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNG-KLS 160
DY G +DQ++ ++++L+ +P RRHI++AWN + + +MALPPCH L Q+YV N LS
Sbjct: 126 DDYTGVGVDQLAKLIETLKNNPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLS 185
Query: 161 CQLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQL 220
C LYQRS D+ LG PFNIASY++LTMMLA V G++ GE +GD H+Y NH Q QL
Sbjct: 186 CNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYEPGELAIFIGDAHIYENHLTQLKEQL 245
Query: 221 SRSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
SR+PR PQ+ + ++ F++ED L Y P+ I ++V
Sbjct: 246 SRTPRPFPQLKFKRKVENIEDFKWEDIELIGYYPYPTIKMDMAV 289
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 276 bits (706), Expect = 2e-75
Identities = 130/283 (45%), Positives = 175/283 (61%), Gaps = 20/283 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
QYL ++H+++ G + DRTG GT S FG Q R+ L FPLLTTK+V WK V+ ELLW
Sbjct: 6 LQYLGQIQHILRCGVRKDDRTGTGTLSVFGMQARYSLRDEFPLLTTKRVFWKGVLEELLW 65
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADKDG------------ELGPIYGVQWRSW-------- 101
F++G +N L GV IWD +D +LGP+YG QWR +
Sbjct: 66 FIKGSTNAKELSSKGVKIWDANGSRDFLDSLGFSTREEGDLGPVYGFQWRHFGAEYRDME 125
Query: 102 PDYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
DY G +DQ+ ++ +++ +P RR I+ AWN + MALPPCH L QFYV N +LSC
Sbjct: 126 SDYSGQGVDQLQRVIDTIKTNPDDRRIIMCAWNPRDLPLMALPPCHALCQFYVVNSELSC 185
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
QLYQRSGD+ LG+PFNIASY+LLT M+A + G + G+FIHTLGD H+Y NH E +QL
Sbjct: 186 QLYQRSGDMGLGVPFNIASYALLTYMIAHITGLKPGDFIHTLGDAHIYLNHIEPLKIQLQ 245
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
R PR P++ I + + F+ EDF + Y PH I +++V
Sbjct: 246 REPRPFPKLRILRKVEKIDDFKAEDFQIEGYNPHPTIKMEMAV 288
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 273 bits (699), Expect = 9e-75
Identities = 124/282 (43%), Positives = 180/282 (63%), Gaps = 20/282 (7%)
Query: 2 HQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELLW 61
+QYL+++ ++ G+ + DRTGVG S FGY M+FDLS+ FPLLTTKK+ + ++ ELLW
Sbjct: 44 YQYLNIIYDIMMNGNKQSDRTGVGVLSKFGYIMKFDLSQYFPLLTTKKLFLRGIIEELLW 103
Query: 62 FLRGDSNVSYLHRHGVSIWDEWADK------------DGELGPIYGVQWRSWP------- 102
F+RG++N + L V IW+ + +LGPIYG QWR +
Sbjct: 104 FIRGETNGNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMY 163
Query: 103 -DYDGNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSC 161
+Y+ +DQ+ +I+ ++ DP SRR ++ AWNV +D+MALPPCH L QFYV +GKLSC
Sbjct: 164 DNYENKGVDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCHILCQFYVFDGKLSC 223
Query: 162 QLYQRSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLS 221
+YQRS D+ LG+PFNIASYS+ T M+A V Q +FIH LG+ H+YNNH + +QL+
Sbjct: 224 IMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQPAQFIHVLGNAHVYNNHIDSLKIQLN 283
Query: 222 RSPRTLPQMIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVS 263
R P P + +NP+I ++ F DFT+++Y H I ++
Sbjct: 284 RIPYPFPTLKLNPDIKNIEDFTISDFTIQNYVHHEKISMDMA 325
>d1tisa_ d.117.1.1 (A:) Thymidylate synthase {Bacteriophage T4
[TaxId: 10665]}
Length = 286
Score = 249 bits (637), Expect = 2e-67
Identities = 120/291 (41%), Positives = 168/291 (57%), Gaps = 32/291 (10%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
M QY DL++ + + G + DRTG GT + FG ++R+DL+KGFP +TTKK+ WK+ + EL+
Sbjct: 1 MKQYQDLIKDIFENGYETDDRTGTGTIALFGSKLRWDLTKGFPAVTTKKLAWKACIAELI 60
Query: 61 WFLRGDSNVSYL-------HRHGVSIWDEWAD--------KDGELGPIYGVQWRSWPDYD 105
WFL G +NV+ L G ++WDE + GELGPIYG QWR +
Sbjct: 61 WFLSGSTNVNDLRLIQHDSLIQGKTVWDENYENQAKDLGYHSGELGPIYGKQWRDF---- 116
Query: 106 GNVIDQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQ 165
+DQI ++ ++ P RR IVSAWN A + MALPPCH +QF V NG L Q YQ
Sbjct: 117 -GGVDQIIEVIDRIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNVRNGYLDLQWYQ 175
Query: 166 RSGDVFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPR 225
RS DVFLG+PFNIASY+ L ++A + G+ I + G+ H+Y NH EQ L R P+
Sbjct: 176 RSVDVFLGLPFNIASYATLVHIVAKMCNLIPGDLIFSGGNTHIYMNHVEQCKEILRREPK 235
Query: 226 TLPQMIIN------------PNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
L +++I+ + +L R +DF L +Y H I K++V
Sbjct: 236 ELCELVISGLPYKFRYLSTKEQLKYVLKLRPKDFVLNNYVSHPPIKGKMAV 286
>d1bkpa_ d.117.1.1 (A:) Thymidylate synthase {Bacillus subtilis
[TaxId: 1423]}
Length = 278
Score = 236 bits (602), Expect = 2e-63
Identities = 103/275 (37%), Positives = 151/275 (54%), Gaps = 13/275 (4%)
Query: 2 HQYLDLLRHVIKFGSD----------RRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVH 51
QY +++ +I G D T T S QMRFD S P+LTTKKV
Sbjct: 5 KQYNSIIKDIINNGISDEEFDVRTKWDSDGTPAHTLSVISKQMRFDNS-EVPILTTKKVA 63
Query: 52 WKSVVHELLWFLRGDSN-VSYLHRHGVSIWDEWADKDGELGPIYG-VQWRSWPDYDGNVI 109
WK+ + ELLW + SN V+ L+ GV IWD+W +DG +G YG + +G +
Sbjct: 64 WKTAIKELLWIWQLKSNDVNDLNMMGVHIWDQWKQEDGTIGHAYGFQLGKKNRSLNGEKV 123
Query: 110 DQISSIVQSLRADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGD 169
DQ+ ++ L+ +P SRRHI WN +D MAL PC Q+YV +GKL ++ RS D
Sbjct: 124 DQVDYLLHQLKNNPSSRRHITMLWNPDELDAMALTPCVYETQWYVKHGKLHLEVRARSND 183
Query: 170 VFLGIPFNIASYSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQ 229
+ LG PFN+ Y++L M+A V G++ GE+I +GD H+Y H + +Q+ R P+
Sbjct: 184 MALGNPFNVFQYNVLQRMIAQVTGYELGEYIFNIGDCHVYTRHIDNLKIQMEREQFEAPE 243
Query: 230 MIINPNIVDLLSFRYEDFTLRSYEPHAAILAKVSV 264
+ INP + D F +DF L +Y+ +L +V+V
Sbjct: 244 LWINPEVKDFYDFTIDDFKLINYKHGDKLLFEVAV 278
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 218 bits (557), Expect = 3e-58
Identities = 52/236 (22%), Positives = 81/236 (34%), Gaps = 22/236 (9%)
Query: 1 MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
+ + L +K D+TGV T G D F L + + EL
Sbjct: 8 VEEIRLHLGLALKEKDFVVDKTGVKTIEIIGASFVADEPFIFGALNDEYI-----QRELE 62
Query: 61 WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120
W+ V + IW + A GE+ YG S +Y Q + L
Sbjct: 63 WYKSKSLFVKDIPGETPKIWQQVASSKGEINSNYGWAIWSEDNYA-----QYDMCLAELG 117
Query: 121 ADPYSRRHIVSAWN-----VALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIP 175
+P SRR I+ D M+ C Q+ + + K++ + RS DV G
Sbjct: 118 QNPDSRRGIMIYTRPSMQFDYNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFR 177
Query: 176 FNIASYSLLTMMLA-------SVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSP 224
+ A + L S ++ G I +G +H+Y+ HF D
Sbjct: 178 NDYAWQKYVLDKLVSDLNAGDSTRQYKAGSIIWNVGSLHVYSRHFYLVDHWWKTGE 233
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase
{Alfalfa (Medicago sativa) [TaxId: 3879]}
Length = 244
Score = 25.5 bits (55), Expect = 5.2
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 44 LLTTKKVHWKSVVHELLWFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSW 101
S W D + + G W ++ DK+ E + S
Sbjct: 8 ECVLDPTLSGSYHELKKWIYEEDLTL-FGVTLGSGFW-DFLDKNPEYNTSFNDAMASD 63
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 339
Score = 24.5 bits (52), Expect = 8.8
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 2/55 (3%)
Query: 71 YLHRHGVSIWDEWADKDGELGPIYGVQW--RSWPDYDGNVIDQISSIVQSLRADP 123
GV W D G + G + + S + LR P
Sbjct: 70 IADDLGVLTMPGWECCDKWEGQVNGEEKGEPWVESDYPIAKASMFSEAERLRDHP 124
>d1vi7a1 d.14.1.11 (A:3-137) Hypothetical protein YigZ, N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 135
Score = 24.4 bits (53), Expect = 9.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 110 DQISSIVQSLRADPYSRRHIVSAW 133
+ + V+S+RA+ RH AW
Sbjct: 34 EAAKAFVESVRAEHPDARHHCVAW 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.449
Gapped
Lambda K H
0.267 0.0451 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,062,049
Number of extensions: 49679
Number of successful extensions: 211
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 16
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.5 bits)