BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780956|ref|YP_003065369.1| thymidylate synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (264 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780956|ref|YP_003065369.1| thymidylate synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 264

 Score =  548 bits (1412), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60
           MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL
Sbjct: 1   MHQYLDLLRHVIKFGSDRRDRTGVGTRSTFGYQMRFDLSKGFPLLTTKKVHWKSVVHELL 60

Query: 61  WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120
           WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR
Sbjct: 61  WFLRGDSNVSYLHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDGNVIDQISSIVQSLR 120

Query: 121 ADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIAS 180
           ADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIAS
Sbjct: 121 ADPYSRRHIVSAWNVALIDKMALPPCHCLFQFYVDNGKLSCQLYQRSGDVFLGIPFNIAS 180

Query: 181 YSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240
           YSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL
Sbjct: 181 YSLLTMMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPNIVDLL 240

Query: 241 SFRYEDFTLRSYEPHAAILAKVSV 264
           SFRYEDFTLRSYEPHAAILAKVSV
Sbjct: 241 SFRYEDFTLRSYEPHAAILAKVSV 264


>gi|254780940|ref|YP_003065353.1| ribonuclease III [Candidatus Liberibacter asiaticus str. psy62]
          Length = 227

 Score = 26.6 bits (57), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 72  LHRHGVSIWDEWADKDGELGPIYGVQWRSWPDYDG--NVIDQISSIVQSLRADPYSR 126
             R   +   EWA     + P Y V +RS PD+D    V+ +IS +  +   D   R
Sbjct: 153 FRRDAKTELQEWAHAKFGVTPEYKVTFRSGPDHDPRFTVVVEISGLAPAQGMDCSKR 209


>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
          Length = 837

 Score = 25.8 bits (55), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 32  YQMRFDLSKGFPLLTTKKVHWKSVVHEL 59
           Y    DL +    ++T K++WK V+HE 
Sbjct: 534 YDFTADLEEKLDEISTGKLNWKEVLHEF 561


>gi|254781112|ref|YP_003065525.1| putative amino acid-binding periplasmic ABC transporter protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 274

 Score = 25.4 bits (54), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 177 NIASYSLLT-MMLASVIGFQYGEFIHTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINPN 235
           +I S+  LT   +A ++G     F   L    +++++FEQ+ LQL  S RT   MI +  
Sbjct: 140 DIRSFKDLTDKTVAQILGTDLSRFAKELKSHLVFSHNFEQS-LQLLLSKRTDATMIPDIP 198

Query: 236 IVDLLSFRYED 246
             + L  R  D
Sbjct: 199 FFNFLERRPHD 209


>gi|254780395|ref|YP_003064808.1| organic solvent tolerance protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 762

 Score = 22.7 bits (47), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 201 HTLGDVHLYNNHFEQADLQLSRSPRTLPQMIINP 234
           HTL   ++YNN+ E  + +      ++ +  INP
Sbjct: 283 HTLHAAYMYNNNVESGEERHQAMLASIAEFEINP 316


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.140    0.449 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,950
Number of Sequences: 1233
Number of extensions: 7533
Number of successful extensions: 17
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 5
length of query: 264
length of database: 328,796
effective HSP length: 72
effective length of query: 192
effective length of database: 240,020
effective search space: 46083840
effective search space used: 46083840
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 37 (18.9 bits)