HHsearch alignment for GI: 254780957 and conserved domain: COG1985
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].
Probab=97.31 E-value=0.013 Score=35.71 Aligned_cols=131 Identities=17% Similarity=0.295 Sum_probs=85.7
Q ss_pred CCCCCEEEEEEECCCCEEEEC-CCCCC-CCHHHHHHHHHHHC-CCEEEEEECCCCC----CC-C--CC---CCCEEEEEE
Q ss_conf 957719999997179768562-67687-78899999999708-9879997111134----34-5--66---896389992
Q gi|254780957|r 1 MTRPEIILIAAITRNNVIGSC-GGMPW-KISSDLKRFKSLTT-GNPVVMGYRTFQS----IG-R--LL---PGRTNIIIT 67 (176)
Q Consensus 1 m~~~~i~~I~A~~~n~~IG~~-~~lPW-~~~~Dl~~Fk~~T~-~~~vimGrkT~~s----l~-~--pL---p~R~niVlT 67 (176)
T Consensus 1 ~~rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~rVIlD 80 (218)
T COG1985 1 RGRPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAESDAILVGSGTVLADNPSLTVRLPEGGEERNPVRVILD 80 (218)
T ss_pred CCCCEEEEEEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHCCEEEECCCEEEEECCCCCEECCCCCCCCCCEEEEEC
T ss_conf 99963999999713676126798753673988999999999875989977667980288522424888766798799987
Q ss_pred ECCCCC----C-CCC---CCEEEEC------------------------CHHHHHHHHCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 147743----4-568---9859990------------------------1889887632379845999710889987420
Q gi|254780957|r 68 RDNTRR----A-SVN---PEAVLAS------------------------SILDSLDLASKTGSKKIFIIGGGEIYAQTIS 115 (176)
Q Consensus 68 r~~~~~----~-~~~---~~~~~~~------------------------s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~ 115 (176)
T Consensus 81 ~~~rlp~~~~v~~~~~~~p~~v~~~~~~~~~~~~~~~g~~~i~~~~~~vdl~~~l~~L~~~~i~~vlvEGG~~L~~s~l~ 160 (218)
T COG1985 81 SRLRLPLDSRVFRTGEGAPTIVVTTEPEEKLRELKEAGVEVILLPDGRVDLAALLEELAERGINSVLVEGGATLNGSFLE 160 (218)
T ss_pred CCCCCCCHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
T ss_conf 89888713332206888848999468436667787479779984866548999999998666728998438999999997
Q ss_pred --HCCEEEEEEECCCCCC
Q ss_conf --0589999877386278
Q gi|254780957|r 116 --LAHTLYITHIEKEIEG 131 (176)
Q Consensus 116 --~~d~l~iT~I~~~~eg 131 (176)
T Consensus 161 ~glVDel~l~iaP~i~G~ 178 (218)
T COG1985 161 AGLVDELLLYIAPKILGG 178 (218)
T ss_pred CCCCCEEEEEECCHHCCC
T ss_conf 799718999983321178