HHsearch results for GI: 254780957 and protein with PDBid: 3ky8_A

>3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.52  E-value=4.7e-13  Score=95.34  Aligned_cols=157  Identities=17%  Similarity=0.282  Sum_probs=106.5

Q ss_pred             CCEEEEEEECCCCEEE-ECCCCCCCC----HHHH----HHHHHHHCCCEEEEEECCCCCCC----CCCCCCEEEEEEECC
Q ss_conf             7199999971797685-626768778----8999----99999708987999711113434----566896389992147
Q gi|254780957|r    4 PEIILIAAITRNNVIG-SCGGMPWKI----SSDL----KRFKSLTTGNPVVMGYRTFQSIG----RLLPGRTNIIITRDN   70 (176)
Q Consensus         4 ~~i~~I~A~~~n~~IG-~~~~lPW~~----~~Dl----~~Fk~~T~~~~vimGrkT~~sl~----~pLp~R~niVlTr~~   70 (176)
                      ++| +..|++.+|.|. .+|...|-.    +++.    +-+++..  .+|||||+||+...    .+.+++..+|+|+..
T Consensus        21 ~~I-v~iA~SLDG~IA~~~g~~~Wi~~~~~~~~~~~~~~~~~~~~--dailvGr~Ty~~~~~~~~~~~~~~~~~V~s~~~   97 (197)
T 3ky8_A           21 ANI-VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERV--DGLVMGRNTLDMVLSFDCDWPYSKPVFVLSNTM   97 (197)
T ss_dssp             EEE-EEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHC--SEEEEEHHHHHHHCCTTCCCCCSSCEEEECSSC
T ss_pred             CCE-EEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CEEEECCCCEECCCCCCCCCCCCCCEEEECCCC
T ss_conf             000-39999487821898998368479888789999999998548--999978141103355575566788789970666


Q ss_pred             CCCCC-CCCCEEEEC-CHHHHHHHHCCCCCCEEEEECHHHHHHHHH--HHCCEEEEEEECCCC-CCCEECCCCCH-HHEE
Q ss_conf             74345-689859990-188988763237984599971088998742--005899998773862-78476657895-5608
Q gi|254780957|r   71 TRRAS-VNPEAVLAS-SILDSLDLASKTGSKKIFIIGGGEIYAQTI--SLAHTLYITHIEKEI-EGDVFFPSIDS-NIWK  144 (176)
Q Consensus        71 ~~~~~-~~~~~~~~~-s~~~al~~~~~~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I~~~~-egD~~fP~id~-~~~~  144 (176)
                      ..... ..+.+.++. ++.++++.+.+...+.++| ||+.+..+++  .++|+++++..+.-. .|...|+.++. -.|+
T Consensus        98 ~~~~~~~~~~v~~~~~d~~~~l~~l~~~g~~~i~i-gGg~~~~~~l~~gLvDEl~l~i~P~llG~G~~lF~~~~~~~~L~  176 (197)
T 3ky8_A           98 TEVPQGYEDKVFLVKGKLVDIIADLNAKGFNELYI-DGGVTIQNFLKEDLIDEMVITRFPILLGGGVPLFGELESSLSFN  176 (197)
T ss_dssp             CSCCTTCTTTEEEECSCHHHHHHHHHHTTCCEEEE-ESHHHHHHHHHTTCCCEEEEEEESEECSSSEESCCCCSSCEEEE
T ss_pred             CCCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEE-CCCCCCHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCE
T ss_conf             64554689989998299799999999679966998-16761100120688755799992379758851667777676778


Q ss_pred             EEEEEEEECCCCCCCCCEEEEEEEEEC
Q ss_conf             985665102688888736999999801
Q gi|254780957|r  145 KQEKEIITSAGEGDDYPTRFVIYDRFL  171 (176)
Q Consensus       145 ~~~~~~~~~~~e~n~~~y~f~~y~R~~  171 (176)
                      +.+.+.+.     ++  ..+.+|+|+.
T Consensus       177 L~~~~~~~-----~g--~v~l~Y~~kr  196 (197)
T 3ky8_A          177 VIKSEVVL-----DS--LTQTTYHRKR  196 (197)
T ss_dssp             EEEEEEET-----TT--EEEEEEEECC
T ss_pred             EEEEEECC-----CC--EEEEEEEEEE
T ss_conf             96889928-----98--6999999950