Query gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 176
No_of_seqs 123 out of 1831
Neff 7.0
Searched_HMMs 23785
Date Tue May 31 23:09:43 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780957.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zdr_A Dihydrofolate reductase 100.0 0 0 367.4 20.6 164 5-173 1-164 (164)
2 3dfr_A Dihydrofolate reductase 100.0 0 0 360.6 19.8 159 7-170 2-161 (162)
3 3ix9_A Dihydrofolate reductase 100.0 0 0 358.9 21.3 165 1-171 21-187 (190)
4 3ia4_A Dihydrofolate reductase 100.0 0 0 360.9 18.8 162 4-171 1-162 (162)
5 3jwk_A Dihydrofolate reductase 100.0 0 0 359.0 20.2 163 3-171 6-168 (168)
6 2w9h_A DHFR, dihydrofolate red 100.0 0 0 358.4 18.7 159 4-171 1-159 (159)
7 3dau_A Dihydrofolate reductase 100.0 0 0 356.1 19.2 159 5-170 1-159 (159)
8 2w3w_A Dihydrofolate reductase 100.0 0 0 354.8 17.8 161 1-170 1-167 (167)
9 2fzi_A Dihydrofolate reductase 100.0 0 0 354.8 14.0 169 1-171 1-206 (206)
10 1vdr_A DHFR, dihydrofolate red 100.0 0 0 350.2 17.4 159 4-172 1-160 (162)
11 3hj3_A Chain A, crystal struct 100.0 0 0 350.5 16.0 168 1-173 1-181 (521)
12 1j3k_A Bifunctional dihydrofol 100.0 0 0 346.5 17.1 165 6-174 11-233 (280)
13 3nrr_A Dihydrofolate reductase 100.0 0 0 344.6 18.7 163 3-173 12-194 (515)
14 1aoe_A DHFR, dihydrofolate red 100.0 0 0 346.5 14.9 166 1-170 1-192 (192)
15 3jsu_A Dihydrofolate reductase 100.0 0 0 341.4 18.7 164 6-173 11-232 (608)
16 1kmv_A DHFR, dihydrofolate red 100.0 0 0 345.2 15.4 165 5-171 3-186 (186)
17 1df7_A DHFR, dihydrofolate red 100.0 0 0 342.1 17.9 153 5-170 1-159 (159)
18 3cse_A Dihydrofolate reductase 100.0 0 0 342.7 12.6 173 1-173 1-220 (227)
19 2bl9_A Dihydrofolate reductase 100.0 0 0 335.1 17.2 162 5-170 9-238 (238)
20 3irm_A Bifunctional dihydrofol 100.0 0 0 315.3 16.0 139 1-140 18-195 (521)
21 1juv_A DHFR, dihydrofolate red 100.0 0 0 313.8 13.1 160 5-168 1-193 (193)
22 1cz3_A Dihydrofolate reductase 100.0 6.6E-36 2.8E-40 228.6 15.5 158 5-168 2-165 (168)
23 3jtw_A Dihydrofolate reductase 99.8 1.3E-20 5.6E-25 139.3 11.4 158 1-169 2-177 (178)
24 2gd9_A Hypothetical protein YY 99.6 4.7E-15 2E-19 107.0 7.8 158 4-170 9-188 (189)
25 3ky8_A Putative riboflavin bio 99.5 4.7E-13 2E-17 95.3 14.4 157 4-171 21-196 (197)
26 2azn_A HTP reductase, putative 98.8 2.7E-07 1.1E-11 61.7 14.1 128 3-130 3-177 (219)
27 3kgy_A Bifunctional deaminase- 98.8 1.8E-07 7.6E-12 62.8 12.7 160 3-170 20-231 (231)
28 2p4g_A Hypothetical protein; p 98.6 1.5E-06 6.4E-11 57.4 13.7 164 2-172 32-263 (270)
29 2hxv_A Diaminohydroxyphosphori 97.9 0.00037 1.5E-08 43.5 13.0 125 3-129 159-318 (360)
30 2g6v_A Riboflavin biosynthesis 97.9 0.00052 2.2E-08 42.6 12.8 129 2-132 172-356 (402)
31 2b3z_A Riboflavin biosynthesis 97.7 0.0009 3.8E-08 41.2 12.0 127 3-131 157-331 (373)
32 1jq5_A Glycerol dehydrogenase; 54.1 10 0.00042 17.6 3.4 72 43-114 12-103 (370)
33 1j6u_A UDP-N-acetylmuramate-al 47.7 10 0.00042 17.6 2.6 72 56-130 307-392 (469)
34 1o5z_A Folylpolyglutamate synt 45.1 13 0.00056 16.9 2.9 70 56-128 302-379 (442)
35 1ltk_A Phosphoglycerate kinase 38.6 20 0.00084 15.9 3.8 29 96-124 212-246 (425)
36 1to0_A Hypothetical UPF0247 pr 37.6 15 0.00063 16.6 2.2 35 86-120 88-124 (167)
37 1o2d_A Alcohol dehydrogenase, 35.9 22 0.00093 15.6 6.4 73 42-114 20-115 (371)
38 1vpe_A Phosphoglycerate kinase 34.8 23 0.00097 15.5 3.7 28 96-123 184-217 (398)
39 1ns5_A Hypothetical protein YB 34.8 15 0.00061 16.7 1.7 35 86-120 84-119 (155)
40 1v6s_A Phosphoglycerate kinase 34.5 23 0.00098 15.5 3.5 28 96-123 181-215 (390)
41 1gg4_A UDP-N-acetylmuramoylala 33.9 24 0.001 15.4 5.1 67 56-123 311-390 (452)
42 1oj7_A Hypothetical oxidoreduc 33.3 24 0.001 15.4 4.4 83 32-114 14-123 (408)
43 1o6d_A Hypothetical UPF0247 pr 33.2 15 0.00065 16.5 1.7 35 86-120 83-118 (163)
44 3hl0_A Maleylacetate reductase 32.7 25 0.001 15.3 4.5 72 43-114 14-104 (353)
45 2wzb_A Phosphoglycerate kinase 31.9 26 0.0011 15.2 3.9 27 98-124 205-237 (416)
46 1fw8_A PGK P72, phosphoglycera 31.7 26 0.0011 15.2 3.6 26 99-124 134-165 (416)
47 3jzd_A Iron-containing alcohol 30.5 27 0.0011 15.1 3.7 31 84-114 76-106 (358)
48 1vlj_A NADH-dependent butanol 28.6 29 0.0012 14.9 5.5 72 43-114 23-118 (407)
49 1vh0_A Hypothetical UPF0247 pr 28.3 26 0.0011 15.2 2.1 35 86-120 90-126 (161)
50 1ta9_A Glycerol dehydrogenase; 28.0 30 0.0013 14.8 3.9 72 42-114 70-162 (450)
51 1php_A 3-phosphoglycerate kina 27.9 30 0.0013 14.8 3.9 28 96-123 184-218 (394)
52 16pk_A PGK, 3-phosphoglycerate 27.5 31 0.0013 14.8 3.6 28 96-123 202-236 (415)
53 1y81_A Conserved hypothetical 27.5 23 0.00098 15.5 1.8 50 45-108 54-104 (138)
54 1rrm_A Lactaldehyde reductase; 27.1 31 0.0013 14.7 3.9 74 41-114 9-105 (386)
55 2cmg_A Spermidine synthase; tr 26.4 29 0.0012 15.0 2.1 49 92-140 67-119 (262)
56 3ffy_A Putative tetrapyrrole ( 25.1 34 0.0014 14.5 2.9 84 20-108 22-114 (115)
57 3bfj_A 1,3-propanediol oxidore 23.9 36 0.0015 14.4 6.3 73 42-114 12-109 (387)
58 1qpg_A PGK, 3-phosphoglycerate 23.2 37 0.0016 14.3 3.6 29 96-124 200-235 (415)
59 1ffv_C CUTM, flavoprotein of c 22.4 27 0.0011 15.1 1.3 25 27-52 13-37 (287)
60 1zmr_A Phosphoglycerate kinase 21.6 40 0.0017 14.1 3.9 29 96-124 180-215 (387)
61 2f00_A UDP-N-acetylmuramate--L 21.0 41 0.0017 14.0 8.0 46 85-130 358-414 (491)
No 1
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=100.00 E-value=0 Score=367.43 Aligned_cols=164 Identities=34% Similarity=0.656 Sum_probs=149.9
Q ss_pred CEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEC
Q ss_conf 19999997179768562676877889999999970898799971111343456689638999214774345689859990
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVLAS 84 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~~~ 84 (176)
+|++|||+++||+||++|+||||+|+||+|||++|+|++||||||||+|||+|||+|.||||||+..... .....+.
T Consensus 1 mi~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~viMGRkT~esi~~pL~~R~niVls~~~~~~~---~~~~~~~ 77 (164)
T 1zdr_A 1 MISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTMGHAIVMGRKTFEAIGRPLPGRDNVVVTGNRSFRP---EGCLVLH 77 (164)
T ss_dssp CEEEEEEEETTCEEEBTTBCSSCCHHHHHHHHHHHTTSEEEEEHHHHHHHCSCCTTSEEEEECSCTTCCC---TTCEEEC
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHCCCCCCEEEEECCCCCCC---CCCEEEC
T ss_conf 9799999989997828996165588999999986589789996426576654177883599860322235---6530113
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEE
Q ss_conf 18898876323798459997108899874200589999877386278476657895560898566510268888873699
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRF 164 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f 164 (176)
++++++... +...++||||||++||++++++||+||||+|+.+++||+|||+++.+.|++++++. ...+++|+++|+|
T Consensus 78 ~~~~~~~~~-~~~~~~i~IiGG~~iY~~~l~~~~~i~lT~I~~~~egD~~FP~~~~~~~~~~~~~~-~~~de~n~~~y~f 155 (164)
T 1zdr_A 78 SLEEVKQWI-ASRADEVFIIGGAELFRATMPIVDRLYVTKIFASFPGDTFYPPISDDEWEIVSYTP-GGKDEKNPYEHAF 155 (164)
T ss_dssp SHHHHHHHH-HTCCSCEEEEECHHHHHHHGGGCCEEEEEEESSCCCCSEECCCCCTTTEEEEEEEE-CCCSSSSCSCEEE
T ss_pred CHHHHHHHH-HCCCCCEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHCEEEEEEE-CCCCCCCCCCEEE
T ss_conf 689999997-43787389945489999998752699999976453677678889867889999887-6767889974799
Q ss_pred EEEEEECCC
Q ss_conf 999980123
Q gi|254780957|r 165 VIYDRFLSK 173 (176)
Q Consensus 165 ~~y~R~~~~ 173 (176)
++|+|+.+|
T Consensus 156 ~~y~Rk~~~ 164 (164)
T 1zdr_A 156 IIYERKKAK 164 (164)
T ss_dssp EEEEEC---
T ss_pred EEEEEECCC
T ss_conf 999971579
No 2
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A*
Probab=100.00 E-value=0 Score=360.56 Aligned_cols=159 Identities=25% Similarity=0.473 Sum_probs=148.0
Q ss_pred EEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCEEEEEEECCCCCCCCCCCEEEECC
Q ss_conf 9999971797685626768778899999999708987999711113434-566896389992147743456898599901
Q gi|254780957|r 7 ILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG-RLLPGRTNIIITRDNTRRASVNPEAVLASS 85 (176)
Q Consensus 7 ~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~-~pLp~R~niVlTr~~~~~~~~~~~~~~~~s 85 (176)
+||||+++||+||++|+||||+|+||+|||++|+|++||||||||+||| +|||+|.||||||+..+.. +++.++.|
T Consensus 2 slI~A~~~ng~IG~~~~lPW~~~~D~~~F~~~T~~~~vIMGrkT~es~p~~pL~~R~niVls~~~~~~~---~~~~~~~s 78 (162)
T 3dfr_A 2 AFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVLTHQEDYQA---QGAVVVHD 78 (162)
T ss_dssp EEEEEECTTCEEEBTTBCSSCCHHHHHHHHHTTTTSEEEEEHHHHHHSSSSSCTTSEEEEECSCTTCCC---TTSEEESS
T ss_pred CEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCCCCCEEEEECCCCCCCC---CCEEEECC
T ss_conf 289998899944379966877989999999970898599962524435776779971899847754234---88699389
Q ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEEE
Q ss_conf 88988763237984599971088998742005899998773862784766578955608985665102688888736999
Q gi|254780957|r 86 ILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFV 165 (176)
Q Consensus 86 ~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f~ 165 (176)
++++++.+++...++||||||++||++++++||+||+|+|+.+|+||+|||+++++.|+++.++.. .++++++.|+|+
T Consensus 79 ~~~~~~~~~~~~~~~i~IiGG~~IY~~~l~~~d~i~lT~I~~~~~~D~~fp~~~~~~~~~i~~~~~--~~~~~~~~y~F~ 156 (162)
T 3dfr_A 79 VAAVFAYAKQHLDQELVIAGGAQIFTAFKDDVDTLLVTRLAGSFEGDTKMIPLNWDDFTKVSSRTV--EDTNPALTHTYE 156 (162)
T ss_dssp HHHHHHHHHHCCSSCEEECCCHHHHHHTGGGCCEEEEEEESSCCCCSEECCCCCGGGEEEEEEEEE--CCSSGGGCEEEE
T ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEEECCCCHHHCEEEEEEEE--CCCCCCCCEEEE
T ss_conf 999998765236665899687999999886579999987567647876806788589699998852--256799747999
Q ss_pred EEEEE
Q ss_conf 99980
Q gi|254780957|r 166 IYDRF 170 (176)
Q Consensus 166 ~y~R~ 170 (176)
+|+|+
T Consensus 157 iy~RK 161 (162)
T 3dfr_A 157 VWQKK 161 (162)
T ss_dssp EEEEC
T ss_pred EEEEE
T ss_conf 99971
No 3
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=100.00 E-value=0 Score=358.87 Aligned_cols=165 Identities=28% Similarity=0.526 Sum_probs=149.9
Q ss_pred CCCCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 9577199999971797685626768778899999999708987999711113434-566896389992147743456898
Q gi|254780957|r 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG-RLLPGRTNIIITRDNTRRASVNPE 79 (176)
Q Consensus 1 m~~~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~-~pLp~R~niVlTr~~~~~~~~~~~ 79 (176)
|+ ++|++|||+|+||+||++|+|||++|+||+|||++|+|++||||||||+||| +|||+|.|||+||+.... .++
T Consensus 21 m~-~~i~~I~A~~~n~~IG~~~~lPW~~~eDl~~Fk~~T~~~~vIMGrkT~eSlp~~pl~~R~niVlsr~~~~~---~~~ 96 (190)
T 3ix9_A 21 MT-KKIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTLNHAILMGRVTFDGMGRRLLPKRETLILTRNPEEK---IDG 96 (190)
T ss_dssp -C-CCEEEEEEECTTCEEEBTTBCSCCCHHHHHHHHHHHTTSEEEEEHHHHHHTTTCCCTTCEEEEECCSCCSC---CSS
T ss_pred CC-EEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHCCCCCCCCEEEEEECCCCCC---CCC
T ss_conf 80-00689999989997737997477688999999997289709997661265410244896499996564335---576
Q ss_pred EEEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECC-CCCHHHEEEEEEEEEECCCCCC
Q ss_conf 599901889887632379845999710889987420058999987738627847665-7895560898566510268888
Q gi|254780957|r 80 AVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFP-SIDSNIWKKQEKEIITSAGEGD 158 (176)
Q Consensus 80 ~~~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP-~id~~~~~~~~~~~~~~~~e~n 158 (176)
+.++.|+++|++.++. ..++||||||++||++++++||+||+|+|+.+++||+||| +++.+.|++++++. ...++++
T Consensus 97 ~~~~~sl~~al~~~~~-~~~~i~VIGG~~IY~~~l~~~d~i~lT~I~~~~egD~~FP~~~d~~~f~~i~~~~-~~~de~~ 174 (190)
T 3ix9_A 97 VATFHDVQSVLDWYSA-QEKNLYIVGGKQIFQAFEPYLDEVIVTHIHARVEGDTYFPAEFDLSLFETVSSKF-YTKDEKN 174 (190)
T ss_dssp SEEESSHHHHHHHHHT-SCSCEEEEECHHHHHHHGGGCSEEEEEEESSCCCCSEECCCCCCGGGEEEEEEEE-ECCBTTB
T ss_pred CEECCCHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCEEEEEEECCEECCCEECCCCCCHHHCEEEEEEE-CCCCCCC
T ss_conf 3402749999988862-5743999656899999998799999999785437877827844853689999996-0368898
Q ss_pred CCCEEEEEEEEEC
Q ss_conf 8736999999801
Q gi|254780957|r 159 DYPTRFVIYDRFL 171 (176)
Q Consensus 159 ~~~y~f~~y~R~~ 171 (176)
.|+|.|..|+|+.
T Consensus 175 ~y~f~~~~~~RK~ 187 (190)
T 3ix9_A 175 PYDFTIQYRKRKE 187 (190)
T ss_dssp CSCEEEEEEEECC
T ss_pred CCCEEEEEEEEEE
T ss_conf 8538999999521
No 4
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A*
Probab=100.00 E-value=0 Score=360.92 Aligned_cols=162 Identities=37% Similarity=0.671 Sum_probs=148.4
Q ss_pred CCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
Q ss_conf 71999999717976856267687788999999997089879997111134345668963899921477434568985999
Q gi|254780957|r 4 PEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVLA 83 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~~ 83 (176)
.+|++|||+++||+||++|+||||+|+||+|||++|+|++||||||||+|||+|||+|.||||||+..... +++.++
T Consensus 1 MmI~lI~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~viMGrkT~esl~~pL~~R~niVltr~~~~~~---~~~~~~ 77 (162)
T 3ia4_A 1 MIVSMIAALANNRVIGLDNKMPWHLPAELQLFKRATLGKPIVMGRNTFESIGRPLPGRLNIVLSRQTDYQP---EGVTVV 77 (162)
T ss_dssp CEEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHTTSCEEEEHHHHHHHCSCCTTSCEEEECCCTTCCC---TTSEEE
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHCCCCCCCEEEEEECCCCCCC---CCEEEE
T ss_conf 98999999979994868996274188999999985699769996761553322666753799946865565---980897
Q ss_pred CCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEE
Q ss_conf 01889887632379845999710889987420058999987738627847665789556089856651026888887369
Q gi|254780957|r 84 SSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTR 163 (176)
Q Consensus 84 ~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~ 163 (176)
.|+++++.... ..+++|||||++||++++++||++|+|+|+.+++||+|||+++.+.|+++..+. ...+++|+++|+
T Consensus 78 ~sl~~~~~~~~--~~~~i~VIGG~~iY~~~l~~~d~i~iT~I~~~~~~D~~FP~~~~~~~~~v~~~~-~~~~e~n~~~y~ 154 (162)
T 3ia4_A 78 ATLEDAVVAAG--DVEELMIIGGATIYNQCLAAADRLYLTHIELTTEGDTWFPDYEQYNWQEIEHES-YAADDKNPHNYR 154 (162)
T ss_dssp SSHHHHHHHHT--TCSEEEECCCHHHHHHHGGGCSEEEEEEECCCCCCSEECCCGGGSCEEEEEEEE-ECCBTTBCSCEE
T ss_pred CCHHHHHHHHC--CCCCEEECCHHHHHHHHHHHCCEEEEEEECCEECCCEECCCCCHHHCEEEEEEE-ECCCCCCCCCEE
T ss_conf 27899999736--897179915499999999769999998878724687877888846789999887-246788997479
Q ss_pred EEEEEEEC
Q ss_conf 99999801
Q gi|254780957|r 164 FVIYDRFL 171 (176)
Q Consensus 164 f~~y~R~~ 171 (176)
|++|+|+.
T Consensus 155 f~~y~R~k 162 (162)
T 3ia4_A 155 FSLLERVK 162 (162)
T ss_dssp EEEEEECC
T ss_pred EEEEEECC
T ss_conf 99999909
No 5
>3jwk_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5WB; 2.08A {Bacillus anthracis} PDB: 3jw5_A* 3jwf_A* 3jwc_A* 3jvx_A* 3jwm_A* 3jw3_A* 3e0b_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=100.00 E-value=0 Score=358.96 Aligned_cols=163 Identities=33% Similarity=0.665 Sum_probs=149.3
Q ss_pred CCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEE
Q ss_conf 77199999971797685626768778899999999708987999711113434566896389992147743456898599
Q gi|254780957|r 3 RPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVL 82 (176)
Q Consensus 3 ~~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~ 82 (176)
..+|++|||+++||+||++|+|||++|+||+|||++|+|++||||||||+|||+|||+|.||||||+..... +++.+
T Consensus 6 ~M~i~~I~A~~~n~~IG~~~~lPW~~~eDl~~Fk~~T~g~~viMGrkT~esl~~~l~~R~~iVls~~~~~~~---~~~~~ 82 (168)
T 3jwk_A 6 HMRVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNIIVTRNEGYHV---EGCEV 82 (168)
T ss_dssp CSEEEEEEEEETTCEEEBTTBCSCCCHHHHHHHHHHHTTSCEEEEHHHHHHHCSCCTTSCEEEECSCTTCCC---TTCEE
T ss_pred CCEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCEEEEECCCCCCCC---CCCEE
T ss_conf 218999999989997728997156789999999998289809995624465642589966898337765367---99489
Q ss_pred ECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCE
Q ss_conf 90188988763237984599971088998742005899998773862784766578955608985665102688888736
Q gi|254780957|r 83 ASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPT 162 (176)
Q Consensus 83 ~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y 162 (176)
+.+++++++.+. ..+++|||||++||++++++||++|+|+|+.+++||+|||+++.+.|+++.++. ...+++|+++|
T Consensus 83 ~~~~~~~~~~~~--~~~~i~ViGG~~iY~~~l~~~d~i~lT~I~~~~~gD~~FP~~d~~~~~~~~~~~-~~~~e~n~~~y 159 (168)
T 3jwk_A 83 AHSVEEVFELCK--NEEEIFIFGGAQIFDLFLPYVDKLYITKIHHAFEGDTFFPEMDMTNWKEVFVEK-GLTDEKNPYTY 159 (168)
T ss_dssp ESSHHHHHHHTT--TCSEEEEEECHHHHHHHGGGCCEEEEEEESSCCCCSEECCCCCCTTEEEEEEEE-CCCBTTBCSCE
T ss_pred EECHHHHHHHHH--CCCCEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHCEEEEEEE-CCCCCCCCCCE
T ss_conf 722899999841--677539987299999888769999999878852677777988858989999872-34467899668
Q ss_pred EEEEEEEEC
Q ss_conf 999999801
Q gi|254780957|r 163 RFVIYDRFL 171 (176)
Q Consensus 163 ~f~~y~R~~ 171 (176)
+|++|+|+.
T Consensus 160 ~f~~y~Rk~ 168 (168)
T 3jwk_A 160 YYHVYEKQQ 168 (168)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
T ss_conf 999999579
No 6
>2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* 3f0q_X* 3fqc_A* 3fqz_A* 3m08_A* 3f0u_X* 3f0v_X* 3f0x_X* ...
Probab=100.00 E-value=0 Score=358.44 Aligned_cols=159 Identities=32% Similarity=0.561 Sum_probs=145.8
Q ss_pred CCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEE
Q ss_conf 71999999717976856267687788999999997089879997111134345668963899921477434568985999
Q gi|254780957|r 4 PEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVLA 83 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~~ 83 (176)
.+|++|||+++||+||++|+||||+|+||+|||++|+|++||||||||+|+|+|||+|.||||||+..+.. +++.++
T Consensus 1 m~i~lI~A~~~~~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGr~T~~s~~~~l~~R~niVls~~~~~~~---~~~~~~ 77 (159)
T 2w9h_A 1 MTLSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVVLTSDTSFNV---EGVDVI 77 (159)
T ss_dssp -CEEEEEEECTTCEEEBTTBCSSCCHHHHHHHHHHHTTSEEEEEHHHHHHHCSCCTTSEEEEECSCTTCCC---TTCEEE
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHCCCCCEEEEEEECCCCCC---CCCCCC
T ss_conf 98999999999997737996376488999999985579739996761343111348975899971322345---664353
Q ss_pred CCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEE
Q ss_conf 01889887632379845999710889987420058999987738627847665789556089856651026888887369
Q gi|254780957|r 84 SSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTR 163 (176)
Q Consensus 84 ~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~ 163 (176)
.|++++++. .++||||||++||++++++||++|+|+|+.+++||+|||+++.+.|+++++.. ...+++|+++|+
T Consensus 78 ~s~e~~~~~-----~~~i~ViGG~~iY~~~l~~~d~i~lT~I~~~~~gD~ffP~~~~~~~~~~~~~~-~~~~e~n~~~y~ 151 (159)
T 2w9h_A 78 HSIEDIYQL-----PGHVFIFGGQTLFEEMIDKVDDMYITVIEGKFRGDTFFPPYTFEDWEVASSVE-GKLDEKNTIPHT 151 (159)
T ss_dssp CSGGGGGGS-----CSCEEEEECHHHHHHHTTTCSEEEEEEECSCCCCSEECCCCCTTTEEEEEEEE-CCCBTTBCSCEE
T ss_pred CCHHHHHHC-----CCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHCEEEEEEE-CCCCCCCCCCEE
T ss_conf 668897521-----22068976689999988658999999817762677788999968999999898-665778998789
Q ss_pred EEEEEEEC
Q ss_conf 99999801
Q gi|254780957|r 164 FVIYDRFL 171 (176)
Q Consensus 164 f~~y~R~~ 171 (176)
|++|+|++
T Consensus 152 f~~y~Rkk 159 (159)
T 2w9h_A 152 FLHLIRKK 159 (159)
T ss_dssp EEEEEEC-
T ss_pred EEEEEECC
T ss_conf 99999779
No 7
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=100.00 E-value=0 Score=356.10 Aligned_cols=159 Identities=36% Similarity=0.645 Sum_probs=145.4
Q ss_pred CEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEC
Q ss_conf 19999997179768562676877889999999970898799971111343456689638999214774345689859990
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVLAS 84 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~~~ 84 (176)
+|++|||+++||+||++|+||||+|+||+|||++|+|++||||||||+|||+|||+|.||||||++.+. +.+.++.
T Consensus 1 Mi~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~viMGrkT~eslp~~L~~R~niVlsr~~~~~----~~~~~~~ 76 (159)
T 3dau_A 1 MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTD----DRVTWVK 76 (159)
T ss_dssp CEEEEEEECGGGEEEBTTBCSSCCHHHHHHHHHHHTTSCEEEEHHHHHHHCSCCTTSCEEEECSSCCSC----TTSEEES
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCEEEEEECCCCCC----CEEEEEC
T ss_conf 989999997999532899637408899999999838974999776124321367997579982478866----3267741
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEE
Q ss_conf 18898876323798459997108899874200589999877386278476657895560898566510268888873699
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRF 164 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f 164 (176)
++++++..+. ..+++|||||++||++++++||++|+|+|+.+++||+|||+++.+.|+++.++. +..+++|+++|+|
T Consensus 77 ~~~~~~~~~~--~~~~v~viGG~~iY~~~l~~~d~i~lT~I~~~~e~D~~FP~~d~~~~~~v~~~~-~~~d~~n~~~y~f 153 (159)
T 3dau_A 77 SVDEAIAACG--DVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEF-HDADAQNSHSYCF 153 (159)
T ss_dssp SHHHHHHTTC--SCSCEEECCCHHHHHHHGGGCSEEEEEEECCCCCCSEECCCCCGGGEEEEEEEE-ECCBTTBSSCEEE
T ss_pred CHHHHHHHHC--CCCCEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHCEEEEEEE-CCCCCCCCCCEEE
T ss_conf 6999999854--787369982899999999879999999757721676657988968989999886-2667778986799
Q ss_pred EEEEEE
Q ss_conf 999980
Q gi|254780957|r 165 VIYDRF 170 (176)
Q Consensus 165 ~~y~R~ 170 (176)
++|+|+
T Consensus 154 ~~y~rk 159 (159)
T 3dau_A 154 EILERR 159 (159)
T ss_dssp EEEEEC
T ss_pred EEEECC
T ss_conf 999769
No 8
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=100.00 E-value=0 Score=354.80 Aligned_cols=161 Identities=35% Similarity=0.592 Sum_probs=143.2
Q ss_pred CCCCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC---CCCCCCEEEEEEECCCCCCCCC
Q ss_conf 9577199999971797685626768778899999999708987999711113434---5668963899921477434568
Q gi|254780957|r 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVN 77 (176)
Q Consensus 1 m~~~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~~~~~ 77 (176)
|++|+|++|||+++||+||++|+|||++|+||+|||++|+|++||||||||+|+| +|||+|.||||||+..+..
T Consensus 1 m~~~~i~lI~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~g~~vIMGrkT~~s~~~~~~pL~~r~niVltr~~~~~~--- 77 (167)
T 2w3w_A 1 MTRAEVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTMGHTVIMGRRTWESLPAKVRPLPGRRNVVVSRRPDFVA--- 77 (167)
T ss_dssp --CCCCEEEEEEETTSEEEBTTBCSCCCHHHHHHHHHHHTTSEEEEEHHHHHHSCGGGSSCTTSEEEEECSCTTCCC---
T ss_pred CCCCEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCC---
T ss_conf 99872999999999997628996166688999999997489809997881000575564589984999953642036---
Q ss_pred CCEEEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCC---CCCEECCCCCHHHEEEEEEEEEECC
Q ss_conf 9859990188988763237984599971088998742005899998773862---7847665789556089856651026
Q gi|254780957|r 78 PEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEI---EGDVFFPSIDSNIWKKQEKEIITSA 154 (176)
Q Consensus 78 ~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~---egD~~fP~id~~~~~~~~~~~~~~~ 154 (176)
+++.+++|++++++.+.. .++||||||++||+++|++||++|+|+|+.++ +||+|||+++.+ |....++ ..
T Consensus 78 ~~~~v~~s~~~al~~~~~--~~~i~IiGG~~IY~~~l~~~d~l~iT~I~~~~~~~~~D~fFP~~~~~-~~~~~~~---~~ 151 (167)
T 2w3w_A 78 EGARVAGSLEAALAYAGS--DPAPWVIGGAQIYLLALPHATRCEVTEIEIDLRRDDDDALAPALDDS-WVGETGE---WL 151 (167)
T ss_dssp TTSEEESSHHHHHHHTTT--CSSCEEEECHHHHHHHGGGCSEEEEEEEECCCCCCTTSEECCCCCTT-CEEEECC---CE
T ss_pred CCEEEECCHHHHHHHHCC--CCEEEEECCHHHHHHHHHHCCEEEEEEEECCCCCCCCCEECCCCCHH-HEEEECC---EE
T ss_conf 875995689999987104--76699982499999999768999999994013677877789999957-9488423---00
Q ss_pred CCCCCCCEEEEEEEEE
Q ss_conf 8888873699999980
Q gi|254780957|r 155 GEGDDYPTRFVIYDRF 170 (176)
Q Consensus 155 ~e~n~~~y~f~~y~R~ 170 (176)
.+++++.|+|++|+|.
T Consensus 152 ~~~~~~~y~f~~y~R~ 167 (167)
T 2w3w_A 152 ASRSGLRYRFHSYRRD 167 (167)
T ss_dssp ECTTSCEEEEEEEEC-
T ss_pred CCCCCCCEEEEEEECC
T ss_conf 1578984799999829
No 9
>2fzi_A Dihydrofolate reductase; trimethoprim derivatives, ring stacking interactions, oxidoreductase; HET: NAP DH3; 1.60A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 4cd2_A* 1vj3_A*
Probab=100.00 E-value=0 Score=354.82 Aligned_cols=169 Identities=31% Similarity=0.529 Sum_probs=145.5
Q ss_pred CC-CCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCC----------CEEEEEECCCCCCC---CCCCCCEEEEE
Q ss_conf 95-771999999717976856267687788999999997089----------87999711113434---56689638999
Q gi|254780957|r 1 MT-RPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG----------NPVVMGYRTFQSIG---RLLPGRTNIII 66 (176)
Q Consensus 1 m~-~~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~----------~~vimGrkT~~sl~---~pLp~R~niVl 66 (176)
|+ +++|++|||+++||+||++|+||||+|+||+|||++|+| ++||||||||+||| ||||+|.||||
T Consensus 1 m~~~~~i~lI~A~~~n~~IG~~~~LPW~l~~Dl~~Fk~~T~~~~~~~~~~~~n~VIMGRkT~eSip~~~rPLp~R~niVl 80 (206)
T 2fzi_A 1 MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVI 80 (206)
T ss_dssp CCSSSCEEEEEEEETTCEEESSSSCSSCCHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGGGCSCTTEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCEECCCCCCCCCCCCCEEEEE
T ss_conf 99887189999988999662799247879899999999747897656545575899940724367766678899748999
Q ss_pred EECCCCCCCCCCCEEEECCHHHHHHHHCC-------CCCCEEEEECHHHHHHHHH--HHCCEEEEEEECCCCCCCEECC-
Q ss_conf 21477434568985999018898876323-------7984599971088998742--0058999987738627847665-
Q gi|254780957|r 67 TRDNTRRASVNPEAVLASSILDSLDLASK-------TGSKKIFIIGGGEIYAQTI--SLAHTLYITHIEKEIEGDVFFP- 136 (176)
Q Consensus 67 Tr~~~~~~~~~~~~~~~~s~~~al~~~~~-------~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I~~~~egD~~fP- 136 (176)
||++.... .+++.++.|+++|++.+.+ ...++||||||++||+++| ++||++|+|+|+.+++||+|||
T Consensus 81 Sr~~~~~~--~~~~~~~~s~~~al~~~~~~~~~~~~~~~~~I~IiGG~~IY~~~l~~~~~d~i~lT~I~~~~~~D~ffP~ 158 (206)
T 2fzi_A 81 TRNESLDL--GNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPL 158 (206)
T ss_dssp CSCCSSCC--CSSCEEESSHHHHHHHHHHHSCTTSSSEEEEEEEEECHHHHHHHHHCTTEEEEEEEEEESCCCCSEECSS
T ss_pred ECCCCCCC--CCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEEECCCCCCCEECCC
T ss_conf 26887556--8996996789999999998665653046764999463999999857701088999996763268877887
Q ss_pred CCCHHHEEEEEEEEEE-------------CCCCCCCCCEEEEEEEEEC
Q ss_conf 7895560898566510-------------2688888736999999801
Q gi|254780957|r 137 SIDSNIWKKQEKEIIT-------------SAGEGDDYPTRFVIYDRFL 171 (176)
Q Consensus 137 ~id~~~~~~~~~~~~~-------------~~~e~n~~~y~f~~y~R~~ 171 (176)
.++.+.|+++.++..+ ...++|+++|+|++|+|+.
T Consensus 159 ~~~~~~w~~~~~~~~~~~~~~~~~~~v~~~~~~en~~~y~F~~y~Rk~ 206 (206)
T 2fzi_A 159 KFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL 206 (206)
T ss_dssp CTTSGGGTTTCEECCHHHHHHHHTSCCCCSCEEETTEEEEEEEEECCC
T ss_pred CCCHHHCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 578311728876512210222146434555334689508999999729
No 10
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=100.00 E-value=0 Score=350.20 Aligned_cols=159 Identities=29% Similarity=0.523 Sum_probs=146.1
Q ss_pred CCEEEEEEECCCCEEEECCCCCC-CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEE
Q ss_conf 71999999717976856267687-78899999999708987999711113434566896389992147743456898599
Q gi|254780957|r 4 PEIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVL 82 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG~~~~lPW-~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~ 82 (176)
.+|++|||+++||+||++|+||| |+|+||+|||++|+|++||||||||+|||+|||+|.||||||++.. ...+++.+
T Consensus 1 m~i~~I~A~~~~~~IG~~~~lPW~~~~~Dl~~F~~~T~~~~vIMGrkT~esl~~plp~R~~iVlsr~~~~--~~~~~~~~ 78 (162)
T 1vdr_A 1 MELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIADDPVVLGRTTFESMRDDLPGSAQIVMSRSERS--FSVDTAHR 78 (162)
T ss_dssp -CEEEEEEEEETSEEEBTTBCSSCCCHHHHHHHHHHTSSSCEEEEHHHHHHTTTSCCSSSEEEECSSCCC--CCSSSCCE
T ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCCCEEEEEECCCC--CCCCCEEE
T ss_conf 9899999998999576799687735888999999855897799987702543112568732999712121--02697699
Q ss_pred ECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCE
Q ss_conf 90188988763237984599971088998742005899998773862784766578955608985665102688888736
Q gi|254780957|r 83 ASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPT 162 (176)
Q Consensus 83 ~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y 162 (176)
+.+++++++.+++.+.++||||||++||++++++||++|+|+|+.+++||+|||++|.+.|++++.+.. .+|
T Consensus 79 ~~~~~~ai~~~~~~~~~~I~ViGG~~Iy~~~l~~~dei~iT~I~~~~~~D~~fP~~d~~~~~~~~~~~~--------~~f 150 (162)
T 1vdr_A 79 AASVEEAVDIAASLDAETAYVIGGAAIYALFQPHLDRMVLSRVPGEYEGDTYYPEWDAAEWELDAETDH--------EGF 150 (162)
T ss_dssp ESSHHHHHHHHHHTTCSCEEEEECHHHHHHHGGGCSEEEEEEEEEECCCSEECCCCCTTTEEEEEEEEC--------SSC
T ss_pred EEEHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCEECCCCCHHHCEEEEEEEC--------CCE
T ss_conf 612999999986289966999877899999987438579999756646767888898689899999616--------997
Q ss_pred EEEEEEEECC
Q ss_conf 9999998012
Q gi|254780957|r 163 RFVIYDRFLS 172 (176)
Q Consensus 163 ~f~~y~R~~~ 172 (176)
+|++|+|.++
T Consensus 151 ~~~~y~Rk~~ 160 (162)
T 1vdr_A 151 TLQEWVRSAS 160 (162)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEEECCC
T ss_conf 9999993699
No 11
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=100.00 E-value=0 Score=350.48 Aligned_cols=168 Identities=27% Similarity=0.537 Sum_probs=145.1
Q ss_pred CCCCCEEEEEEE-CCCCEEEECCCCCCCCHHHHHHHHHHHCC-------CEEEEEECCCCCCC-CCCCCCEEEEEEECCC
Q ss_conf 957719999997-17976856267687788999999997089-------87999711113434-5668963899921477
Q gi|254780957|r 1 MTRPEIILIAAI-TRNNVIGSCGGMPWKISSDLKRFKSLTTG-------NPVVMGYRTFQSIG-RLLPGRTNIIITRDNT 71 (176)
Q Consensus 1 m~~~~i~~I~A~-~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~-------~~vimGrkT~~sl~-~pLp~R~niVlTr~~~ 71 (176)
|+.+.|++|+|. ++|++||++|+||||+|+||+|||++|+| |+|||||||||||| ||||+|.||||||+..
T Consensus 1 M~~~~~~iiVaa~~~n~gIG~~g~LPW~lp~Dlk~Fk~~T~~~~~~~~~n~VIMGRkT~eSip~rPLp~R~nIVlSr~~~ 80 (521)
T 3hj3_A 1 MSEKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPLKNRIIVVISSSLP 80 (521)
T ss_dssp --CCCEEEEEEEETTTCEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGGTTCCCTTSEEEEECSSSC
T ss_pred CCCCCCEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHCCCCCCCCCEEEEECCCCC
T ss_conf 99887289999855898172799237879899999999858999767874599847625418955697796999999894
Q ss_pred CCCCCCCCEEEECCHHHHHHHHCC-CCCCEEEEECHHHHHHHHHH--HCCEEEEEEEC-CCCCCCEECCCCCHHHEEEEE
Q ss_conf 434568985999018898876323-79845999710889987420--05899998773-862784766578955608985
Q gi|254780957|r 72 RRASVNPEAVLASSILDSLDLASK-TGSKKIFIIGGGEIYAQTIS--LAHTLYITHIE-KEIEGDVFFPSIDSNIWKKQE 147 (176)
Q Consensus 72 ~~~~~~~~~~~~~s~~~al~~~~~-~~~~~i~IIGG~~IY~~~l~--~~d~l~iT~I~-~~~egD~~fP~id~~~~~~~~ 147 (176)
.. ...+++.++.|+++|++.+.+ ...++||||||++||+++|+ +||++|+|+|+ .+++||+|||+++.+.|.+..
T Consensus 81 ~~-~~~~~v~~~~sl~~al~~~~~~~~~~~ifVIGG~~IY~~~L~~~~~d~iylT~I~~~~~e~DtfFP~id~~~~~~~~ 159 (521)
T 3hj3_A 81 QD-EADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYRDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYM 159 (521)
T ss_dssp CC-CSCSSEEEESSTTTTTTSSSSCTTEEEEEEEECHHHHHHHHHTTCCSEEEEEEECCCSSCCSEECCCCCTTEEEEEE
T ss_pred CC-CCCCCEEEECCHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCCEEEEEEEECCCCCCCEECCCCCHHHEEEEE
T ss_conf 22-47999899899999999987467777599986899999865756678899999804316777589988756728865
Q ss_pred EEEEECCCCCCCCCEEEEEEEEECCC
Q ss_conf 66510268888873699999980123
Q gi|254780957|r 148 KEIITSAGEGDDYPTRFVIYDRFLSK 173 (176)
Q Consensus 148 ~~~~~~~~e~n~~~y~f~~y~R~~~~ 173 (176)
++.. ..+++.|+|++|+|+.++
T Consensus 160 s~~~----~e~~~~y~F~~y~rk~~~ 181 (521)
T 3hj3_A 160 SQTF----CTKNISYDFMIFEKQEKK 181 (521)
T ss_dssp CCCE----EETTEEECCEEEEECCC-
T ss_pred EEEE----CCCCCCEEEEEEEEECCC
T ss_conf 3003----368984279999985154
No 12
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=100.00 E-value=0 Score=346.50 Aligned_cols=165 Identities=31% Similarity=0.527 Sum_probs=148.0
Q ss_pred EEEEEEECC-----------------CCEEEECCCCCCC-CHHHHHHHHHHH----------------------------
Q ss_conf 999999717-----------------9768562676877-889999999970----------------------------
Q gi|254780957|r 6 IILIAAITR-----------------NNVIGSCGGMPWK-ISSDLKRFKSLT---------------------------- 39 (176)
Q Consensus 6 i~~I~A~~~-----------------n~~IG~~~~lPW~-~~~Dl~~Fk~~T---------------------------- 39 (176)
|-.|+|+++ ++|||++|+|||+ +|+||+|||++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rGIG~~g~LPW~~i~~Dmk~Fk~~Tt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (280)
T 1j3k_A 11 IYAICACCKVESKNEGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVN 90 (280)
T ss_dssp EEEEEEEEEECCCSSCGGGCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC-----
T ss_pred HHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43046664035777653002225666566677994889988699999999746766544222222222221112233323
Q ss_pred -------CCCEEEEEECCCCCCC---CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHHHH
Q ss_conf -------8987999711113434---566896389992147743456898599901889887632379845999710889
Q gi|254780957|r 40 -------TGNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEI 109 (176)
Q Consensus 40 -------~~~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~I 109 (176)
+|++||||||||+||| ||||+|.||||||+.... ...+++.++.|+++|+..+++.+.++||||||++|
T Consensus 91 ~~~~~~~~gn~VIMGRkT~eSip~~~rPLp~R~NIVLSr~~~~~-~~~~~v~v~~Sleeal~~l~~~~~~~IfVIGG~~I 169 (280)
T 1j3k_A 91 DMPNSKKLQNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKLNYYKCFILGGSVV 169 (280)
T ss_dssp -----CCCCCEEEEEHHHHHHSCGGGCSCTTSEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHSCCSCEEECCCHHH
T ss_pred CCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCEEEEEECCCCCC-CCCCCEEEECCHHHHHHHHHHHCCCCEEEECHHHH
T ss_conf 33331246957998457176566335789997089994575323-47999899868999999986414663799768999
Q ss_pred HHHHH--HHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEEEEEEEECCCC
Q ss_conf 98742--005899998773862784766578955608985665102688888736999999801231
Q gi|254780957|r 110 YAQTI--SLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFLSKN 174 (176)
Q Consensus 110 Y~~~l--~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f~~y~R~~~~~ 174 (176)
|+++| ++||+||||+|+++|+||+|||+++.+.|+++++.... +++++.|+|++|+|+..++
T Consensus 170 Y~~~L~~~lid~IyLT~I~~~~egDtfFP~id~~~fklvs~~~~~---~en~~~Y~F~iY~R~n~k~ 233 (280)
T 1j3k_A 170 YQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSDVY---TSNNTTLDFIIYKKTNNKM 233 (280)
T ss_dssp HHHHHHTTCCSEEEEEEEEEEECCSEECCCCCTTTEEEEEECCCE---EETTEEEEEEEEEECCC--
T ss_pred HHHHHCCCCCCEEEEEEECCEECCCEECCCCCHHHCEEEEEECCC---CCCCCCEEEEEEECCCCCC
T ss_conf 999851432798999998971267766797885889899852313---3789705899998268865
No 13
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=100.00 E-value=0 Score=344.60 Aligned_cols=163 Identities=29% Similarity=0.530 Sum_probs=143.4
Q ss_pred CCCEEEEEEECCCCEEEECCCCCC-CCHHHHHHHHHHHC-------------CCEEEEEECCCCCCCC---CCCCCEEEE
Q ss_conf 771999999717976856267687-78899999999708-------------9879997111134345---668963899
Q gi|254780957|r 3 RPEIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTT-------------GNPVVMGYRTFQSIGR---LLPGRTNII 65 (176)
Q Consensus 3 ~~~i~~I~A~~~n~~IG~~~~lPW-~~~~Dl~~Fk~~T~-------------~~~vimGrkT~~sl~~---pLp~R~niV 65 (176)
-..|++|||+++||+||++|+||| |+|+||+|||++|+ +++||||||||||||+ |||+|.|||
T Consensus 12 ~~~i~lIvA~~~n~~IG~~~~LPW~~lp~Dl~~Fk~~T~~~~~~~~~~~~~~~n~VIMGRkT~eSip~~~~PLp~R~nIV 91 (515)
T 3nrr_A 12 CGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPKASLPLKNRINVI 91 (515)
T ss_dssp CCCEEEEEEECTTSEEEBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCGGGCSCTTEEEEE
T ss_pred CCCEEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCCCCEEEE
T ss_conf 98689999988999276799688865999999999973689764433435679589980674766897778897795999
Q ss_pred EEECCCCCCCCCCCEEEECCHHHHHHHHC-CCCCCEEEEECHHHHHHHHHH--HCCEEEEEEECCCCCCCEECCCCCHHH
Q ss_conf 92147743456898599901889887632-379845999710889987420--058999987738627847665789556
Q gi|254780957|r 66 ITRDNTRRASVNPEAVLASSILDSLDLAS-KTGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNI 142 (176)
Q Consensus 66 lTr~~~~~~~~~~~~~~~~s~~~al~~~~-~~~~~~i~IIGG~~IY~~~l~--~~d~l~iT~I~~~~egD~~fP~id~~~ 142 (176)
|||+.. ..+++.++.|+++|++.+. ..+.++||||||++||+++|+ +||++|+|+|+.+++||+|||+++ +.
T Consensus 92 lSr~~~----~~~~~~~~~sl~~al~~~~~~~~~~~i~IiGG~~IY~~~l~~~~~d~i~lT~I~~~~~gD~~FP~i~-~~ 166 (515)
T 3nrr_A 92 LSRTVK----EVPGCLVYEDLSTAIRDLRANVPHNKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIP-DT 166 (515)
T ss_dssp ECSSCC----CCTTEEEESSHHHHHHHHHHHSCCSCEEECCCHHHHHHHHHTTCEEEEEEEEESSCCCCSEECCCCC-TT
T ss_pred ECCCCC----CCCCCEEECCHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCCEEEEEEEEEEECCCCCCCCCC-CC
T ss_conf 899897----6899689899999999998416878589965199999861634589899988805754773178887-41
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEEECCC
Q ss_conf 0898566510268888873699999980123
Q gi|254780957|r 143 WKKQEKEIITSAGEGDDYPTRFVIYDRFLSK 173 (176)
Q Consensus 143 ~~~~~~~~~~~~~e~n~~~y~f~~y~R~~~~ 173 (176)
|+++... ...+.+++.|+|++|+|+..+
T Consensus 167 ~~~~~~~---~~~~~~~~~y~F~~y~Rk~~~ 194 (515)
T 3nrr_A 167 FEITAIS---PTFSTDFVSYDFVIYERKDCK 194 (515)
T ss_dssp EEEEEEC---CCEECSSCEEEEEEEEECC--
T ss_pred CEEEEEE---CCCCCCCCCEEEEEEEEECCC
T ss_conf 1699984---254679996599999985674
No 14
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A*
Probab=100.00 E-value=0 Score=346.51 Aligned_cols=166 Identities=38% Similarity=0.651 Sum_probs=143.4
Q ss_pred CCCCCEEEEE-EECCCCEEEECCCCCCCCHHHHHHHHHHHC-------CCEEEEEECCCCCCC---CCCCCCEEEEEEEC
Q ss_conf 9577199999-971797685626768778899999999708-------987999711113434---56689638999214
Q gi|254780957|r 1 MTRPEIILIA-AITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQSIG---RLLPGRTNIIITRD 69 (176)
Q Consensus 1 m~~~~i~~I~-A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~-------~~~vimGrkT~~sl~---~pLp~R~niVlTr~ 69 (176)
|.+|+|++|+ |+++|++||++|+||||+|+||+|||++|+ |++||||||||+||| ||||+|.||||||+
T Consensus 1 m~~p~i~~ivaA~~~n~gIG~~~~LPW~l~~Dl~~Fk~~T~~~~~~~~~n~vIMGRkT~eSip~~~rPLp~R~niVlSr~ 80 (192)
T 1aoe_A 1 MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQKFRPLPDRLNIILSRS 80 (192)
T ss_dssp CCSCCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTT
T ss_pred CCCCCEEEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCEEEEEECC
T ss_conf 99985699999957997294899125759899999999856777667781899967746647734446799758999625
Q ss_pred CCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHH--HHCCEEEEEEEC----CCCCCCEECCCCCHHHE
Q ss_conf 774345689859990188988763237984599971088998742--005899998773----86278476657895560
Q gi|254780957|r 70 NTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTI--SLAHTLYITHIE----KEIEGDVFFPSIDSNIW 143 (176)
Q Consensus 70 ~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I~----~~~egD~~fP~id~~~~ 143 (176)
..+.. ..+++.++.|+++|++.+++ .++||||||++||+++| ++||+||+|+|+ .+++||+||| ++.+.|
T Consensus 81 ~~~~~-~~~~v~~~~s~~~al~~~~~--~~~i~ViGG~~IY~~~l~~~~~d~l~iT~I~~~~~~~~~~Dtf~~-f~~~~w 156 (192)
T 1aoe_A 81 YENEI-IDDNIIHASSIESSLNLVSD--VERVFIIGGAEIYNELINNSLVSHLLITEIEHPSPESIEMDTFLK-FPLESW 156 (192)
T ss_dssp CCCEE-EETTEEEESSHHHHHHTCCS--EEEEEECCCHHHHHHHTTSTTEEEEEEEEEECSCGGGSCCCEECC-CCGGGE
T ss_pred CCCCC-CCCEEEEECCHHHHHHHHCC--CCEEEEECCHHHHHHHHCCCCCCEEEEEEEECCCCCCCCEEEECC-CCHHHC
T ss_conf 63454-54304774889999988528--962999889999999845657898999999545688645136278-897987
Q ss_pred EEEEEEEEE---------CCCCCCCCCEEEEEEEEE
Q ss_conf 898566510---------268888873699999980
Q gi|254780957|r 144 KKQEKEIIT---------SAGEGDDYPTRFVIYDRF 170 (176)
Q Consensus 144 ~~~~~~~~~---------~~~e~n~~~y~f~~y~R~ 170 (176)
++...+... ...+++++.|+|++|+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~e~~~~y~F~~y~RK 192 (192)
T 1aoe_A 157 TKQPKSELQKFVGDTVLEDDIKEGDFTYNYTLWTRK 192 (192)
T ss_dssp EECCHHHHHHHHTTCCCCSSEEETTEEEEEEEEEEC
T ss_pred EECCHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEC
T ss_conf 460176654212543334654448962899999919
No 15
>3jsu_A Dihydrofolate reductase-thymidylate synthase; rossmann fold, oxidoreductase, transferase; HET: KA5 NDP UMP; 2.70A {Plasmodium falciparum}
Probab=100.00 E-value=0 Score=341.37 Aligned_cols=164 Identities=31% Similarity=0.535 Sum_probs=146.4
Q ss_pred EEEEEEECC-----------------CCEEEECCCCCCC-CHHHHHHHHHHH----------------------------
Q ss_conf 999999717-----------------9768562676877-889999999970----------------------------
Q gi|254780957|r 6 IILIAAITR-----------------NNVIGSCGGMPWK-ISSDLKRFKSLT---------------------------- 39 (176)
Q Consensus 6 i~~I~A~~~-----------------n~~IG~~~~lPW~-~~~Dl~~Fk~~T---------------------------- 39 (176)
|-.|+|+++ ++|||++|+|||+ +|+||+|||++|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~t~rGIGk~g~LPW~~l~~Dmk~Fk~~Tt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (608)
T 3jsu_A 11 IYAICACCKVESKNEGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVN 90 (608)
T ss_dssp EEEEEEEEEECCCCSCSSSCCCCGGGEEEEEBTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCCC-----
T ss_pred HHEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 44045663156766553233346777653787993889989799999999746766544322222222222222333333
Q ss_pred -------CCCEEEEEECCCCCCC---CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHHHH
Q ss_conf -------8987999711113434---566896389992147743456898599901889887632379845999710889
Q gi|254780957|r 40 -------TGNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEI 109 (176)
Q Consensus 40 -------~~~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~I 109 (176)
+|++|||||||||||| ||||+|.||||||+.... ...+++.+++|+++|++.+.+.+.++||||||++|
T Consensus 91 ~~~~~~~~~NaVIMGRKTweSIP~k~RPLp~R~NIVLSR~~~~~-~~~~~v~v~~sl~~al~~~~~~~~~~IfIIGG~~I 169 (608)
T 3jsu_A 91 DMPNSKKLQNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKE-DFDEDVYIINKVEDLIVLLGKLNYYKCFILGGSVV 169 (608)
T ss_dssp -----CCCCEEEEEEHHHHHTSCGGGCSCTTEEEEEECSSCCGG-GCCSSCEEESSHHHHHHHHHHSCCSCEEEEECHHH
T ss_pred CCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCEEEECCCCCCC-CCCCCEEEECCHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 44332357967998077477688667989589389987889644-47999599899999999974279974999734999
Q ss_pred HHHHH--HHCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEEEEEEEECCC
Q ss_conf 98742--00589999877386278476657895560898566510268888873699999980123
Q gi|254780957|r 110 YAQTI--SLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFLSK 173 (176)
Q Consensus 110 Y~~~l--~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f~~y~R~~~~ 173 (176)
|+++| ++|++||+|+|+.+|+||||||+++.+.|+++...... +.+++.|+|++|+|...+
T Consensus 170 Y~~~L~~p~~~~iylT~I~~~~ecDtfFP~id~~~f~~~~~s~~~---~en~~~y~F~~Y~r~~~k 232 (608)
T 3jsu_A 170 YQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSDVY---TSNNTTLDFIIYKKTNNK 232 (608)
T ss_dssp HHHHHHTTCCSEEEEEEEEEEECCSEECCCCCTTTEEEEEEEEEE---ECSSCEEEEEEEEECCC-
T ss_pred HHHHHCCCCCCEEEEEEECCCCCCCEECCCCCHHHCEEEECCCCC---CCCCCCEEEEEEEECCCC
T ss_conf 999851757998999987674257336797875997898412521---468974479999974686
No 16
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3fs6_A* 1mvs_A* ...
Probab=100.00 E-value=0 Score=345.20 Aligned_cols=165 Identities=28% Similarity=0.528 Sum_probs=143.6
Q ss_pred CEEEEEEECCCCEEEECCCCCC-CCHHHHHHHHHHHCC-------CEEEEEECCCCCCC---CCCCCCEEEEEEECCCCC
Q ss_conf 1999999717976856267687-788999999997089-------87999711113434---566896389992147743
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTG-------NPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRR 73 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW-~~~~Dl~~Fk~~T~~-------~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~ 73 (176)
.+++|||+++||+||++|+||| |+|+||+|||++|+| ++||||||||+||| ||||+|.||||||+....
T Consensus 3 ~~~~I~A~~~n~~IG~~g~lPW~~~~~Dl~~Fk~~T~~~~~~~~~~~vIMGrkT~es~p~~~rpLp~R~niVlSr~~~~~ 82 (186)
T 1kmv_A 3 SLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEP 82 (186)
T ss_dssp CEEEEEEECTTCEEEBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECSSCSSC
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHCCCCCCCCCCCEEEEEECCCCCC
T ss_conf 47999998899967379918798898999999998679987777418999467343176567626996699983254445
Q ss_pred CCCCCCEEEECCHHHHHHHHCC----CCCCEEEEECHHHHHHHHH--HHCCEEEEEEECCCCCCCEECCCCCHHHEEEEE
Q ss_conf 4568985999018898876323----7984599971088998742--005899998773862784766578955608985
Q gi|254780957|r 74 ASVNPEAVLASSILDSLDLASK----TGSKKIFIIGGGEIYAQTI--SLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQE 147 (176)
Q Consensus 74 ~~~~~~~~~~~s~~~al~~~~~----~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~ 147 (176)
.. ....++.|++++++.+.. ...++||||||++||+++| ++||+||+|+|+++|+||+|||+++.+.|+++.
T Consensus 83 ~~--~~~~v~~s~~~~~~~~~~~~~~~~~~~ifIIGG~~IY~~~l~~~~~d~i~lT~I~~~~~~D~fFP~id~~~~~~i~ 160 (186)
T 1kmv_A 83 PQ--GAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLP 160 (186)
T ss_dssp CT--TCSEEESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHHTSCSCEEEEEEEESSCCCCSEECCCCCTTTCEECS
T ss_pred CC--CCEEECCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCCEECCCCCHHHCEEEE
T ss_conf 68--7668618899999986547650677669997509999999737554479999972244788787878969978988
Q ss_pred EEEE--ECCCCCCCCCEEEEEEEEEC
Q ss_conf 6651--02688888736999999801
Q gi|254780957|r 148 KEII--TSAGEGDDYPTRFVIYDRFL 171 (176)
Q Consensus 148 ~~~~--~~~~e~n~~~y~f~~y~R~~ 171 (176)
.... +..++++++.|+|++|+|+.
T Consensus 161 ~~~~~~~~~~~~~~~~y~F~~y~Rk~ 186 (186)
T 1kmv_A 161 EYPGVLSDVQEEKGIKYKFEVYEKND 186 (186)
T ss_dssp CCTTCCCSCEEETTEEEEEEEEEEC-
T ss_pred EECCCCCCCCCCCCCCEEEEEEEECC
T ss_conf 76264256651089848999999687
No 17
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold, nicotinamide adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=100.00 E-value=0 Score=342.10 Aligned_cols=153 Identities=31% Similarity=0.592 Sum_probs=134.7
Q ss_pred CEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCC---CCCCCCEEEEEEECCCCCCCCCCCEE
Q ss_conf 199999971797685626768778899999999708987999711113434---56689638999214774345689859
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAV 81 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~~~~~~~~~ 81 (176)
+|++|||+++||+||++|+||||+|+||+|||++|+|++||||||||+||| +|||+|.||||||++.+.. +++.
T Consensus 1 Mi~lI~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~~~vIMGrkT~eSip~~~rPLp~R~niVlsr~~~~~~---~~~~ 77 (159)
T 1df7_A 1 MVGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRRNVVLSRQADFMA---SGAE 77 (159)
T ss_dssp CEEEEEEEETTSEEEBTTBCSSCCHHHHHHHHHHHTTSEEEEEHHHHHHSCGGGSSCTTSEEEEECSSTTCCC---TTSE
T ss_pred CEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCCCCEEEEEECCCCCCC---CCCE
T ss_conf 9599999889997618996176788999999996379829997870056698763699965999716644367---8867
Q ss_pred EECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCC---CCCEECCCCCHHHEEEEEEEEEECCCCCC
Q ss_conf 990188988763237984599971088998742005899998773862---78476657895560898566510268888
Q gi|254780957|r 82 LASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEI---EGDVFFPSIDSNIWKKQEKEIITSAGEGD 158 (176)
Q Consensus 82 ~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~---egD~~fP~id~~~~~~~~~~~~~~~~e~n 158 (176)
++.|+++|++ .++||||||++||++++++||++|+|+|+.++ +||+|||+++.+ |.+...+. ..+.+
T Consensus 78 v~~sl~~al~------~~~i~ViGG~~iY~~~l~~~~~i~lT~I~~~~~~~~~D~ffP~~d~~-~~~~~~~~---~~~~~ 147 (159)
T 1df7_A 78 VVGSLEEALT------SPETWVIGGGQVYALALPYATRCEVTEVDIGLPREAGDALAPVLDET-WRGETGEW---RFSRS 147 (159)
T ss_dssp EESSHHHHTT------SSSEEECCCHHHHHHHGGGCSEEEEEEECCCCCCCTTCEECCCCCTT-CEEEECCC---EECTT
T ss_pred ECCCHHHHHC------CCCEEEECHHHHHHHHHHHCCEEEEEEEEECCCCCCCCEECCCCCCH-HEEEEEEE---EECCC
T ss_conf 3069988513------67589964489999998768999999995027886666589999821-40786346---64167
Q ss_pred CCCEEEEEEEEE
Q ss_conf 873699999980
Q gi|254780957|r 159 DYPTRFVIYDRF 170 (176)
Q Consensus 159 ~~~y~f~~y~R~ 170 (176)
++.|+|++|+|.
T Consensus 148 ~~~y~f~~y~R~ 159 (159)
T 1df7_A 148 GLRYRLYSYHRS 159 (159)
T ss_dssp SCEEEEEEEECC
T ss_pred CCCEEEEEEECC
T ss_conf 982899999859
No 18
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A*
Probab=100.00 E-value=0 Score=342.75 Aligned_cols=173 Identities=29% Similarity=0.500 Sum_probs=141.7
Q ss_pred CCC-CCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHC-------CCEEEEEECCCCCCC---CCCCCCEEEEEEEC
Q ss_conf 957-7199999971797685626768778899999999708-------987999711113434---56689638999214
Q gi|254780957|r 1 MTR-PEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQSIG---RLLPGRTNIIITRD 69 (176)
Q Consensus 1 m~~-~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~-------~~~vimGrkT~~sl~---~pLp~R~niVlTr~ 69 (176)
|++ |.|++|||+++|++||++|+|||++|+||+|||++|+ |++||||||||+||| ||||+|.||||||+
T Consensus 1 m~~~p~i~iIaA~~~n~gIG~~g~LPW~l~~Dlk~Fk~~T~~~~~~~~~n~VIMGRkT~eSip~~~rPLp~R~niVlSr~ 80 (227)
T 3cse_A 1 MSKVPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQKFRPLPKRINVVVSRS 80 (227)
T ss_dssp --CCCEEEEEEEETTTTEEEBTTBCSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGGGCSCTTSEEEEECTT
T ss_pred CCCCCEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCEECCCCCCCCCCCCCEEEEEECC
T ss_conf 99897699999988999682899246779899999999856776567893899956700227755677899748997247
Q ss_pred CCCCCC-CCCCEEEECCHHHHHHHHCC-----CCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCC-----CCEECCCC
Q ss_conf 774345-68985999018898876323-----79845999710889987420058999987738627-----84766578
Q gi|254780957|r 70 NTRRAS-VNPEAVLASSILDSLDLASK-----TGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIE-----GDVFFPSI 138 (176)
Q Consensus 70 ~~~~~~-~~~~~~~~~s~~~al~~~~~-----~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~e-----gD~~fP~i 138 (176)
..+... ..+++.++.|+++|+..+++ ...++||||||++||+++|++||++|+|+|+.+++ ||+|||..
T Consensus 81 ~~~~~~~~~~~~~~~~sl~~al~~l~~~~~~~~~~~~IfVIGG~~IY~~~l~~~d~i~lT~I~~~~d~~~p~~D~f~p~~ 160 (227)
T 3cse_A 81 FDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYIIGGGEIYRQSMDLADHWLITKIMPLPETTIPQMDTFLQKQ 160 (227)
T ss_dssp SSSSCEEEETTEEEESCHHHHHHHHTCHHHHTTCEEEEEECCCHHHHHHHTTTCSEEEEEEEEECTTSCCCCCSEECCHH
T ss_pred CCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCEEEEEEEEECCCCCCCCCCCCCCHH
T ss_conf 77222357686699374899999988888860799729998999999999866898999999401664786675677522
Q ss_pred CHH----------------HEEEEEE---------EEEECCCCCCCCCEEEEEEEEECCC
Q ss_conf 955----------------6089856---------6510268888873699999980123
Q gi|254780957|r 139 DSN----------------IWKKQEK---------EIITSAGEGDDYPTRFVIYDRFLSK 173 (176)
Q Consensus 139 d~~----------------~~~~~~~---------~~~~~~~e~n~~~y~f~~y~R~~~~ 173 (176)
..+ .|+.... .......++|++.|.|++|+|...-
T Consensus 161 ~~~~~~~~~~~~~~dfv~~~~~~~~~~~~~~~~~~~~~~~~~~eng~~y~f~~y~rk~~~ 220 (227)
T 3cse_A 161 ELEQRFYDNSDKLVDFLPSSIQLEGRLTSQEWNGELVKGLPVQEKGYQFYFTLYTKKLEH 220 (227)
T ss_dssp HHHHHEEECGGGHHHHSCTTCCCSSCCEEEEETTEEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEECCEEEEEEEEEEECCC
T ss_conf 333321125445555456532115643420011434666744089999999999986313
No 19
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=100.00 E-value=0 Score=335.10 Aligned_cols=162 Identities=33% Similarity=0.561 Sum_probs=143.7
Q ss_pred CEEEEEEECCCC-----------------EEEECCCCCCCCHH-HHHHHHHHH---------------------------
Q ss_conf 199999971797-----------------68562676877889-999999970---------------------------
Q gi|254780957|r 5 EIILIAAITRNN-----------------VIGSCGGMPWKISS-DLKRFKSLT--------------------------- 39 (176)
Q Consensus 5 ~i~~I~A~~~n~-----------------~IG~~~~lPW~~~~-Dl~~Fk~~T--------------------------- 39 (176)
.|-.|+|+++.+ |||++|+|||++|+ ||+|||++|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGIG~~g~LPW~~~~~Dmk~Fk~~Tt~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (238)
T 2bl9_A 9 DIYAICACCKVAPTSAGTKNEPFSPRTFRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGG 88 (238)
T ss_dssp TEEEEEEEEEECCCSSSSCCCTTCSCSSCEEEBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC----
T ss_pred HHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 21047777504665555321333577765578799188999878989989862787754433211111111112233333
Q ss_pred ------------------CCCEEEEEECCCCCCC---CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCC
Q ss_conf ------------------8987999711113434---5668963899921477434568985999018898876323798
Q gi|254780957|r 40 ------------------TGNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGS 98 (176)
Q Consensus 40 ------------------~~~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~ 98 (176)
++|+||||||||+||| ||||+|.||||||+..+.. ..+++.+++|+++++..+++.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~n~VIMGRkT~eSiP~~~rPLP~R~NIVlSr~~~~~~-~~~~~~v~~sleeal~~~~~~~~ 167 (238)
T 2bl9_A 89 GDNTSGGDNTHGGDNADKLQNVVVMGRSSWESIPKQYKPLPNRINVVLSKTLTKED-VKEKVFIIDSIDDLLLLLKKLKY 167 (238)
T ss_dssp -----------------CCCEEEEEEHHHHHTSCGGGCSCTTEEEEEECSSCCTTT-CCSSCEEESCHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCCCCCEEEEEECCCCCCC-CCCCEEEECCHHHHHHHHHCCCC
T ss_conf 33323444433333311369579984532655762367799973899932441124-67737997478884356650776
Q ss_pred CEEEEECHHHHHHHHHH--HCCEEEEEEECCCCCCCEECCCCCHHHEEEEEEEEEECCCCCCCCCEEEEEEEEE
Q ss_conf 45999710889987420--0589999877386278476657895560898566510268888873699999980
Q gi|254780957|r 99 KKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRF 170 (176)
Q Consensus 99 ~~i~IIGG~~IY~~~l~--~~d~l~iT~I~~~~egD~~fP~id~~~~~~~~~~~~~~~~e~n~~~y~f~~y~R~ 170 (176)
++||||||++||+++|+ +||+||||+|+.+|+||+|||++|.+.|++....... +++++.|+|++|+|+
T Consensus 168 ~~IfIIGG~~IY~~~L~~~~~d~iylT~I~~~~egDtfFP~id~~~w~~~~~~~~~---~e~~~~y~F~vY~RI 238 (238)
T 2bl9_A 168 YKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEVY---NSKGTTLDFLVYSKV 238 (238)
T ss_dssp SCEEEEECHHHHHHHHHTTCCSEEEEEEEEEEECCSEECCCCCGGGEEEEEECCCE---EETTEEEEEEEEEEC
T ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCCCEECCCCCHHHCEEEEEEEEE---CCCCCEEEEEEEEEC
T ss_conf 64999747999998866301788999984576577768898885998999877315---489980799999979
No 20
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=100.00 E-value=0 Score=315.26 Aligned_cols=139 Identities=30% Similarity=0.583 Sum_probs=120.1
Q ss_pred CCCCCEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCC-------------CEEEEEECCCCCCC---CCCCCCEEE
Q ss_conf 95771999999717976856267687788999999997089-------------87999711113434---566896389
Q gi|254780957|r 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------------NPVVMGYRTFQSIG---RLLPGRTNI 64 (176)
Q Consensus 1 m~~~~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~-------------~~vimGrkT~~sl~---~pLp~R~ni 64 (176)
|..++++||||+++||+||++|+||||+|+||+|||++|+| |+||||||||+||| ||||||.||
T Consensus 18 ~~~~~~slIvA~~~n~gIG~~g~LPW~lp~Dmk~Fk~~T~g~~~~~~~~~~~k~n~VIMGRkT~eSiP~~~RPLp~R~NI 97 (521)
T 3irm_A 18 LALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPPKFRPLPGRLNV 97 (521)
T ss_dssp CSSCCEEEEEEEETTSEEESSSCCCCCCHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCGGGCSCTTEEEE
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCHHHCCCCCCCCCCCCEE
T ss_conf 04566389999989997568990157498999999998679986555555678617994176587779788989679589
Q ss_pred EEEECCCCCC-------------CCCCCEEEECCHHHHHHHHCCCC----CCEEEEECHHHHHHHHH-----HHCCEEEE
Q ss_conf 9921477434-------------56898599901889887632379----84599971088998742-----00589999
Q gi|254780957|r 65 IITRDNTRRA-------------SVNPEAVLASSILDSLDLASKTG----SKKIFIIGGGEIYAQTI-----SLAHTLYI 122 (176)
Q Consensus 65 VlTr~~~~~~-------------~~~~~~~~~~s~~~al~~~~~~~----~~~i~IIGG~~IY~~~l-----~~~d~l~i 122 (176)
||||+..... ....++.++.|+++|++.+.... .++||||||++||+++| ++||+||+
T Consensus 98 VLSr~~~~~~~~~~~~~~~~~~~~~~~~~~v~~sle~al~~~~~~~~~~~~~~IfVIGG~~IY~~aL~~~~~~~~d~iyl 177 (521)
T 3irm_A 98 VLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALRLLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYR 177 (521)
T ss_dssp EECSSCCHHHHHHTSSSHHHHHHHGGGEEEESSCHHHHHHHHTSTTTTTTEEEEEECCCHHHHHHHTSTTGGGGEEEEEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99467862334433332111234677746985899999999865420367863999257999999863512234656999
Q ss_pred EEECCC-CCCCEECCCCCH
Q ss_conf 877386-278476657895
Q gi|254780957|r 123 THIEKE-IEGDVFFPSIDS 140 (176)
Q Consensus 123 T~I~~~-~egD~~fP~id~ 140 (176)
|+|+.+ ++||+||| ++.
T Consensus 178 T~I~~~~~~~d~Ff~-~~~ 195 (521)
T 3irm_A 178 TTIRASESSCSVFFR-VPE 195 (521)
T ss_dssp EEECCSSCCCSEECC-CCC
T ss_pred EEECCCCCCCEEECC-CCC
T ss_conf 986167769718288-880
No 21
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=100.00 E-value=0 Score=313.80 Aligned_cols=160 Identities=23% Similarity=0.337 Sum_probs=131.8
Q ss_pred CEEEEEEEC--------CCCEEEECCCCCC-CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC-
Q ss_conf 199999971--------7976856267687-788999999997089879997111134345668963899921477434-
Q gi|254780957|r 5 EIILIAAIT--------RNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRA- 74 (176)
Q Consensus 5 ~i~~I~A~~--------~n~~IG~~~~lPW-~~~~Dl~~Fk~~T~~~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~- 74 (176)
+|+||+|++ +|++||++|+||| |+|+||+|||++|+|++||||||||+|||+|||||.||||||+.....
T Consensus 1 mi~li~A~~~~~~~~~~~~~~IG~~g~LPW~~l~~Dm~~Fk~~T~~~~vIMGrkT~eSlp~pLp~R~nIVlSr~~~~~~~ 80 (193)
T 1juv_A 1 MIKLVFRYSPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTEGTIMIMGAKTFQSLPTLLPGRSHIVVCDLARDYPV 80 (193)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEBTTBCTTCCCHHHHHHHHHHHTTSEEEEEHHHHHTCSSCCTTSCEEEECCTTSCCCC
T ss_pred CEEEEEEECCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 93799994576411224586471799488846989999999982898599977721543004899609998578755545
Q ss_pred -CCCCCEEEECCHHHHHHHHCC----------------CCCCEEEEECHHHHHHHHHHHCCEEEEEEECCCCCCCEEC--
Q ss_conf -568985999018898876323----------------7984599971088998742005899998773862784766--
Q gi|254780957|r 75 -SVNPEAVLASSILDSLDLASK----------------TGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFF-- 135 (176)
Q Consensus 75 -~~~~~~~~~~s~~~al~~~~~----------------~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~~~egD~~f-- 135 (176)
.....+.+..++++++..+.. ...++||||||++||+++|++||+||+|+|+.+++||++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IiGG~~IY~~~l~~~d~i~lT~I~~~~~~d~~~~~ 160 (193)
T 1juv_A 81 TKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSVIGGPALLYAALPYADEVVVSRIVKRHRVNSTVQL 160 (193)
T ss_dssp CTTCCCCSEEECHHHHHHHHTTCCEEEECTTSSCEEEECTTSCEEEEECHHHHHHHGGGCSEEEEEEEEESSCCCCSEEE
T ss_pred CCCCCCEEEECCHHHHHHHHCCCCEEECCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCCCCCCCCCC
T ss_conf 55666237736899999874256334146899999853689659997699999999866899999997252356754455
Q ss_pred ----CCCCHHHEEEEEEEEEECCCCCCCCCEEEEEEE
Q ss_conf ----578955608985665102688888736999999
Q gi|254780957|r 136 ----PSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYD 168 (176)
Q Consensus 136 ----P~id~~~~~~~~~~~~~~~~e~n~~~y~f~~y~ 168 (176)
|+ +.+.|++.+.+. +..++ ...|+|.+|+
T Consensus 161 D~~fp~-~~~~~~~~~~~~-~~~de--~~~~~~~vyK 193 (193)
T 1juv_A 161 DASFLD-DISKREMVETHW-YKIDE--VTTLTESVYK 193 (193)
T ss_dssp CHHHHH-HHHTSCEEEEEE-EEEET--TEEEEEEEEC
T ss_pred CCCCCC-CCCCCEEEEEEE-EECCC--CCCCCEEEEC
T ss_conf 524887-767454888468-87677--8555278869
No 22
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=100.00 E-value=6.6e-36 Score=228.56 Aligned_cols=158 Identities=27% Similarity=0.450 Sum_probs=127.0
Q ss_pred CEEEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHCC-CEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEE-E
Q ss_conf 1999999717976856267687788999999997089-8799971111343456689638999214774345689859-9
Q gi|254780957|r 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-NPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAV-L 82 (176)
Q Consensus 5 ~i~~I~A~~~n~~IG~~~~lPW~~~~Dl~~Fk~~T~~-~~vimGrkT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~-~ 82 (176)
||.+|+|++.+|.||.++. ||++|+|+++|++.|.+ ++|||||+||+|+|+|||+|.++|+||+..... .+.+. +
T Consensus 2 kii~~~a~s~dG~Ia~~~~-~W~~~ed~~~f~~~~~~~~~vimGr~T~e~~~~pl~~r~~iVls~~~~~~~--~~~~~~~ 78 (168)
T 1cz3_A 2 KVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTEIGNVVMGRITFEEIGRPLPERLNVVLTRRPKTSN--NPSLVFF 78 (168)
T ss_dssp EEEEEEEECTTCEEECSCT-TCSCHHHHHHHHHHHHHHTEEEEEHHHHHHHCSCCTTSEEEEECSSCCCCS--CTTEEEE
T ss_pred EEEEEEEECCCCCEECCCC-CCCCHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCEEEEEEECCCCCC--CCCEEEE
T ss_conf 4999999848984789798-989989999999997089989997417662754367974999975331133--6877997
Q ss_pred ECCHHHHHHHHCCCCCCEEEEECHHHHHHHHH--HHCCEEEEEEECCCC-CCCEECCCCCHH-HEEEEEEEEEECCCCCC
Q ss_conf 90188988763237984599971088998742--005899998773862-784766578955-60898566510268888
Q gi|254780957|r 83 ASSILDSLDLASKTGSKKIFIIGGGEIYAQTI--SLAHTLYITHIEKEI-EGDVFFPSIDSN-IWKKQEKEIITSAGEGD 158 (176)
Q Consensus 83 ~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I~~~~-egD~~fP~id~~-~~~~~~~~~~~~~~e~n 158 (176)
..++.++++.+++...++|||+||++||.+|| +++|++|+|.++..+ +|+.+||+++.. .+++.+.+ ...+..
T Consensus 79 ~~~~~~~i~~l~~~~~~~i~v~GG~~i~~~~l~~~lvDel~lt~ip~~~g~G~~~f~~~~~~~~l~l~~~~---~~~~~g 155 (168)
T 1cz3_A 79 NGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMR---RLNERG 155 (168)
T ss_dssp CSCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCSEEEEEECSEEESSCEESSCCCSCEEEEEEEEEE---ECSSSC
T ss_pred CCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEE---EECCCC
T ss_conf 18899999988756998589992399999986586567889999717558888778988877624997889---958998
Q ss_pred CCCEEEEEEE
Q ss_conf 8736999999
Q gi|254780957|r 159 DYPTRFVIYD 168 (176)
Q Consensus 159 ~~~y~f~~y~ 168 (176)
...++|.+.+
T Consensus 156 ~v~l~Y~v~k 165 (168)
T 1cz3_A 156 TLFLKYSVEK 165 (168)
T ss_dssp CEEEEEEEC-
T ss_pred EEEEEEEEEE
T ss_conf 8999999983
No 23
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural genomics, joint center for structural genomics, JCSG; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.84 E-value=1.3e-20 Score=139.31 Aligned_cols=158 Identities=20% Similarity=0.336 Sum_probs=121.4
Q ss_pred CCCCCEEEEEEECCCCEEE-ECCCCCCC-----CHHHHHHHHHHHC-CCEEEEEECCCCCCC-------CCCCCCEEEEE
Q ss_conf 9577199999971797685-62676877-----8899999999708-987999711113434-------56689638999
Q gi|254780957|r 1 MTRPEIILIAAITRNNVIG-SCGGMPWK-----ISSDLKRFKSLTT-GNPVVMGYRTFQSIG-------RLLPGRTNIII 66 (176)
Q Consensus 1 m~~~~i~~I~A~~~n~~IG-~~~~lPW~-----~~~Dl~~Fk~~T~-~~~vimGrkT~~sl~-------~pLp~R~niVl 66 (176)
|++ ||.+.+|++.||.|. .+|.++|. .+++..+|.+... ..+|||||+||+.+. +|+++|.++|+
T Consensus 2 M~r-kvi~~~a~SlDG~Ia~~~g~~~w~~~~~~~~~~~~~~~~~~~~~dail~Gr~T~~~~~~~~~~~~~~~~~~~~~v~ 80 (178)
T 3jtw_A 2 MAR-KVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVYADRQTYIV 80 (178)
T ss_dssp -CC-CEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHHEEEEEEEHHHHHHHHHHTCSSSCTTTTSEEEEE
T ss_pred CCE-EEEEEEEEECCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCCCCCCCCCCCCEEEE
T ss_conf 950-8989999918986789999957724788877999999999843998998943633015358944334589847999
Q ss_pred EECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHHH--HCCEEEEEEECCCC-CCCEECCCCCH-HH
Q ss_conf 2147743456898599901889887632379845999710889987420--05899998773862-78476657895-56
Q gi|254780957|r 67 TRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEI-EGDVFFPSIDS-NI 142 (176)
Q Consensus 67 Tr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~--~~d~l~iT~I~~~~-egD~~fP~id~-~~ 142 (176)
|++..... ........++.+++..+.+...++++|+||++++.+|+. ++|++++|..+... .|...||.++. ..
T Consensus 81 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~i~v~GG~~l~~~fl~~~LvDel~l~~~P~ilG~G~~lf~~~~~~~~ 158 (178)
T 3jtw_A 81 TSHLGEDT--DKIKYWKQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGIRLFDRLEEQVP 158 (178)
T ss_dssp CSSCCCCC--SSEEEECSCHHHHHHHHHTSSCCEEEEEECHHHHHHHHHTTCCSEEEEEEESCCCCSSEESSSCCCSCCC
T ss_pred EECCCCCC--CCCEECCCCHHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 63244323--4530027999999999997479956998649999999877987775769910886688607788766778
Q ss_pred EEEEEEEEEECCCCCCCCCEEEEEEEE
Q ss_conf 089856651026888887369999998
Q gi|254780957|r 143 WKKQEKEIITSAGEGDDYPTRFVIYDR 169 (176)
Q Consensus 143 ~~~~~~~~~~~~~e~n~~~y~f~~y~R 169 (176)
|++.+.+.. + .+.+.+|+|
T Consensus 159 l~L~~~~~~---~-----~~v~l~Y~R 177 (178)
T 3jtw_A 159 VRLIDVYQK---N-----ELVYSIYQR 177 (178)
T ss_dssp EEEEEEEEE---T-----TEEEEEEEE
T ss_pred CEEEEEEEE---C-----CEEEEEEEC
T ss_conf 489789996---9-----999999827
No 24
>2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=4.7e-15 Score=106.99 Aligned_cols=158 Identities=19% Similarity=0.332 Sum_probs=110.8
Q ss_pred CCEEEEEEECCCCEEE-ECCCCCCCCHHHHHHHHHHHC-CCEEEEEECCCCCCCC----------------CCCCCEEEE
Q ss_conf 7199999971797685-626768778899999999708-9879997111134345----------------668963899
Q gi|254780957|r 4 PEIILIAAITRNNVIG-SCGGMPWKISSDLKRFKSLTT-GNPVVMGYRTFQSIGR----------------LLPGRTNII 65 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG-~~~~lPW~~~~Dl~~Fk~~T~-~~~vimGrkT~~sl~~----------------pLp~R~niV 65 (176)
-||.+-+|++.||-|+ .+|..+|-.+++.++|.+... -.++||||+||+.... +++.+..+|
T Consensus 9 Rkvi~~~A~SlDG~ia~~~g~~~w~~~~~~~~~~~~~~~~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 88 (189)
T 2gd9_A 9 RRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQIDTILYGRKSFDLWGQYIPKNEDPDTEKELWKLVHSKKKYV 88 (189)
T ss_dssp CCEEEEEEECTTSEEECTTSCCTTCCCCTTSCHHHHHHTEEEEEEEHHHHHHHTTC----------CCHHHHHHHSEEEE
T ss_pred CEEEEEEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCCCCCCCCCCCCEECCCCCEEE
T ss_conf 81999999908988799999847758768889999998679787567279976575763767765687221226774141
Q ss_pred EEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHHHHHHHHH--HHCCEEEEEEECCCC-CCCEECCCCCH-H
Q ss_conf 9214774345689859990188988763237984599971088998742--005899998773862-78476657895-5
Q gi|254780957|r 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTI--SLAHTLYITHIEKEI-EGDVFFPSIDS-N 141 (176)
Q Consensus 66 lTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I~~~~-egD~~fP~id~-~ 141 (176)
+|+..... .........++.+++..+.+.+.++|+|.||+.+..+|+ .++|++++|....-. .|...|+.... .
T Consensus 89 ~s~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~v~veGG~~l~~~~l~~glvDel~l~i~P~ilG~G~~~f~~~~~~~ 166 (189)
T 2gd9_A 89 FSRTQNEI--DNQAIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVDEFRLSIHPVVLGEGKPLFIDVKQRI 166 (189)
T ss_dssp ECCEEETT--TTEEECCHHHHHHHHHHHHHSCCSEEEEEECHHHHHHHHHTTCCCEEEEEECSEECSSSEESSCSCCSCE
T ss_pred EECCCCCC--CCCEEEEECCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEECEEECCCCCCCCCCCCCC
T ss_conf 00223556--6643898468899999999748971999676167787764673427899982679889722677777788
Q ss_pred HEEEEEEEEEECCCCCCCCCEEEEEEEEE
Q ss_conf 60898566510268888873699999980
Q gi|254780957|r 142 IWKKQEKEIITSAGEGDDYPTRFVIYDRF 170 (176)
Q Consensus 142 ~~~~~~~~~~~~~~e~n~~~y~f~~y~R~ 170 (176)
.|++.+.+.+. ++ ..+++|+|.
T Consensus 167 ~l~L~~~~~~~-----~g--~v~l~Y~~~ 188 (189)
T 2gd9_A 167 NLKMVNTRTFS-----SG--VVQIVYHWN 188 (189)
T ss_dssp ECEEEEEEECT-----TS--CEEEEEEC-
T ss_pred CCEEEEEEEEC-----CC--EEEEEEEEC
T ss_conf 86897889928-----99--899999858
No 25
>3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.52 E-value=4.7e-13 Score=95.34 Aligned_cols=157 Identities=17% Similarity=0.282 Sum_probs=106.5
Q ss_pred CCEEEEEEECCCCEEE-ECCCCCCCC----HHHH----HHHHHHHCCCEEEEEECCCCCCC----CCCCCCEEEEEEECC
Q ss_conf 7199999971797685-626768778----8999----99999708987999711113434----566896389992147
Q gi|254780957|r 4 PEIILIAAITRNNVIG-SCGGMPWKI----SSDL----KRFKSLTTGNPVVMGYRTFQSIG----RLLPGRTNIIITRDN 70 (176)
Q Consensus 4 ~~i~~I~A~~~n~~IG-~~~~lPW~~----~~Dl----~~Fk~~T~~~~vimGrkT~~sl~----~pLp~R~niVlTr~~ 70 (176)
++| +..|++.+|.|. .+|...|-. +++. +-+++.. .+|||||+||+... .+.+++..+|+|+..
T Consensus 21 ~~I-v~iA~SLDG~IA~~~g~~~Wi~~~~~~~~~~~~~~~~~~~~--dailvGr~Ty~~~~~~~~~~~~~~~~~V~s~~~ 97 (197)
T 3ky8_A 21 ANI-VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERV--DGLVMGRNTLDMVLSFDCDWPYSKPVFVLSNTM 97 (197)
T ss_dssp EEE-EEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHC--SEEEEEHHHHHHHCCTTCCCCCSSCEEEECSSC
T ss_pred CCE-EEEEECCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC--CEEEECCCCEECCCCCCCCCCCCCCEEEECCCC
T ss_conf 000-39999487821898998368479888789999999998548--999978141103355575566788789970666
Q ss_pred CCCCC-CCCCEEEEC-CHHHHHHHHCCCCCCEEEEECHHHHHHHHH--HHCCEEEEEEECCCC-CCCEECCCCCH-HHEE
Q ss_conf 74345-689859990-188988763237984599971088998742--005899998773862-78476657895-5608
Q gi|254780957|r 71 TRRAS-VNPEAVLAS-SILDSLDLASKTGSKKIFIIGGGEIYAQTI--SLAHTLYITHIEKEI-EGDVFFPSIDS-NIWK 144 (176)
Q Consensus 71 ~~~~~-~~~~~~~~~-s~~~al~~~~~~~~~~i~IIGG~~IY~~~l--~~~d~l~iT~I~~~~-egD~~fP~id~-~~~~ 144 (176)
..... ..+.+.++. ++.++++.+.+...+.++| ||+.+..+++ .++|+++++..+.-. .|...|+.++. -.|+
T Consensus 98 ~~~~~~~~~~v~~~~~d~~~~l~~l~~~g~~~i~i-gGg~~~~~~l~~gLvDEl~l~i~P~llG~G~~lF~~~~~~~~L~ 176 (197)
T 3ky8_A 98 TEVPQGYEDKVFLVKGKLVDIIADLNAKGFNELYI-DGGVTIQNFLKEDLIDEMVITRFPILLGGGVPLFGELESSLSFN 176 (197)
T ss_dssp CSCCTTCTTTEEEECSCHHHHHHHHHHTTCCEEEE-ESHHHHHHHHHTTCCCEEEEEEESEECSSSEESCCCCSSCEEEE
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEE-CCCCCCHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCE
T ss_conf 64554689989998299799999999679966998-16761100120688755799992379758851667777676778
Q ss_pred EEEEEEEECCCCCCCCCEEEEEEEEEC
Q ss_conf 985665102688888736999999801
Q gi|254780957|r 145 KQEKEIITSAGEGDDYPTRFVIYDRFL 171 (176)
Q Consensus 145 ~~~~~~~~~~~e~n~~~y~f~~y~R~~ 171 (176)
+.+.+.+. ++ ..+.+|+|+.
T Consensus 177 L~~~~~~~-----~g--~v~l~Y~~kr 196 (197)
T 3ky8_A 177 VIKSEVVL-----DS--LTQTTYHRKR 196 (197)
T ss_dssp EEEEEEET-----TT--EEEEEEEECC
T ss_pred EEEEEECC-----CC--EEEEEEEEEE
T ss_conf 96889928-----98--6999999950
No 26
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=98.79 E-value=2.7e-07 Score=61.72 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=90.2
Q ss_pred CCCEEEEEEECCCCEEEEC-CCCCCCCHHHHHHHHHH-HCCCEEEEEECCCCCC----C-C---CCCCCEEEEEEECCCC
Q ss_conf 7719999997179768562-67687788999999997-0898799971111343----4-5---6689638999214774
Q gi|254780957|r 3 RPEIILIAAITRNNVIGSC-GGMPWKISSDLKRFKSL-TTGNPVVMGYRTFQSI----G-R---LLPGRTNIIITRDNTR 72 (176)
Q Consensus 3 ~~~i~~I~A~~~n~~IG~~-~~lPW~~~~Dl~~Fk~~-T~~~~vimGrkT~~sl----~-~---pLp~R~niVlTr~~~~ 72 (176)
+|.|.+-.|++.+|-|... |.-.|.-++|.+++.+. ....++++|++|...- . + ....-..+|++++...
T Consensus 3 rP~V~~~~a~SlDG~ia~~~g~~~is~~~~~~~~~~lR~~~dail~G~~T~~~d~p~l~~r~~~~~~~~~~vV~d~~~~~ 82 (219)
T 2azn_A 3 KPYIISNVGMTLDGKLATINNDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIKSDRNPVRIVVDSKLRV 82 (219)
T ss_dssp CCEEEEEEEEETTCBSSCTTCCCCCCCHHHHHHHHHHHHTSSEEEEEHHHHHHHCCCCSCCSSCCSSCCEEEEECTTCCC
T ss_pred CCEEEEEEEECCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCC
T ss_conf 88899998886867888999987758979999999999864979995572566587420314554579818996289877
Q ss_pred CC-----CCCCCEEEE------------------------------CCHHHHHHHHCCCCCCEEEEECHHHHHHHHHH--
Q ss_conf 34-----568985999------------------------------01889887632379845999710889987420--
Q gi|254780957|r 73 RA-----SVNPEAVLA------------------------------SSILDSLDLASKTGSKKIFIIGGGEIYAQTIS-- 115 (176)
Q Consensus 73 ~~-----~~~~~~~~~------------------------------~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~-- 115 (176)
.. ...+...++ -++.++++.+.+.+.+.++|-||+.+..+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~fl~~g 162 (219)
T 2azn_A 83 PLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEG 162 (219)
T ss_dssp CTTCGGGSTTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCSSSCCHHHHHHHHHHTTCCEEEEEECHHHHHHHHHTT
T ss_pred CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
T ss_conf 84356651268648995155431348888763067379973248987999999999877997899801099999998876
Q ss_pred HCCEEEEEEECCCCC
Q ss_conf 058999987738627
Q gi|254780957|r 116 LAHTLYITHIEKEIE 130 (176)
Q Consensus 116 ~~d~l~iT~I~~~~e 130 (176)
++|+++++.-..-..
T Consensus 163 liDEl~l~iaP~llG 177 (219)
T 2azn_A 163 LVDEVSVYIAPKIFG 177 (219)
T ss_dssp CCCEEEEEEESCCCC
T ss_pred HCCEEEEEECCEEEC
T ss_conf 347899998663457
No 27
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=98.77 E-value=1.8e-07 Score=62.76 Aligned_cols=160 Identities=15% Similarity=0.178 Sum_probs=97.8
Q ss_pred CCCEEEEEEECCCCEEE-ECCCCCC-CCHHHHHHHHHHH------------------------------------CCCEE
Q ss_conf 77199999971797685-6267687-7889999999970------------------------------------89879
Q gi|254780957|r 3 RPEIILIAAITRNNVIG-SCGGMPW-KISSDLKRFKSLT------------------------------------TGNPV 44 (176)
Q Consensus 3 ~~~i~~I~A~~~n~~IG-~~~~lPW-~~~~Dl~~Fk~~T------------------------------------~~~~v 44 (176)
+++|.+-.|++.+|-|. .++..-| .-+++.+++.+.- .-.++
T Consensus 20 M~~V~~~~a~SLDG~Ia~~~g~~~~l~~~~~~~~~~~~r~~~d~il~g~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 99 (231)
T 3kgy_A 20 MSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFERTGAH 99 (231)
T ss_dssp SCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHHHTEEEE
T ss_pred CHHHEEEEEECCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEECCCCCCCCCCCCCCCCCEEEECCCCCE
T ss_conf 86774888996788404989983565787899999888763698996874144258756556664455514664677805
Q ss_pred EEEECCCCCC----C-CCCCCCEEEEEEECCCCCCCCCCC-EEE--ECCHHHHHHHH-CCCCCCEEEEECHHHHHHHHHH
Q ss_conf 9971111343----4-566896389992147743456898-599--90188988763-2379845999710889987420
Q gi|254780957|r 45 VMGYRTFQSI----G-RLLPGRTNIIITRDNTRRASVNPE-AVL--ASSILDSLDLA-SKTGSKKIFIIGGGEIYAQTIS 115 (176)
Q Consensus 45 imGrkT~~sl----~-~pLp~R~niVlTr~~~~~~~~~~~-~~~--~~s~~~al~~~-~~~~~~~i~IIGG~~IY~~~l~ 115 (176)
+|||++|++. + .+......+|+|+........... ... ..++.+++..+ .+.+.+.|+|.||+.++.+|+.
T Consensus 100 v~g~~~~~~~~~~~~~~~~~~~~~~v~s~~~~~~~~~~~~~~~~~~~~d~~~~l~~l~~~~G~~~i~veGGg~L~~sfl~ 179 (231)
T 3kgy_A 100 IMGKRMFEGGERGWPEEAPFHTPVYVLTHERRNPWVRPGGTTFYFVNDGPEQALALAREAAGERDIRISGGANVIQQYLN 179 (231)
T ss_dssp EEEHHHHHHHHHHSCSSCSCCSEEEEECSSCCCCEEETTTEEEEEECSCHHHHHHHHHHHHTTSEEEEEECHHHHHHHHH
T ss_pred ECCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH
T ss_conf 04753231567627777753320365302444301203786799917986999999998679983999716999998855
Q ss_pred --HCCEEEEEEECCCC-CCCEECCCCCH--HHEEEEEEEEEECCCCCCCCCEEEEEEEEE
Q ss_conf --05899998773862-78476657895--560898566510268888873699999980
Q gi|254780957|r 116 --LAHTLYITHIEKEI-EGDVFFPSIDS--NIWKKQEKEIITSAGEGDDYPTRFVIYDRF 170 (176)
Q Consensus 116 --~~d~l~iT~I~~~~-egD~~fP~id~--~~~~~~~~~~~~~~~e~n~~~y~f~~y~R~ 170 (176)
++||+++|..+.-. .|-..||.... ..+.+... .. . + ...+..|.|.
T Consensus 180 agLvDEl~l~iaP~llG~G~~lf~~~~~~~~~~~l~~~-~~-~----~--g~v~LrY~R~ 231 (231)
T 3kgy_A 180 LGLVDELEIALIPVIFGGGRRLFENLHEPLPQFRIDRV-LA-S----P--TATHLRYVRL 231 (231)
T ss_dssp TTCCSEEEEEEESCCCSSSEESSCSCCSSCCCEEEEEE-EE-C----S--SCEEEEEEEC
T ss_pred CCCCCEEEEEEECEEECCCCCCCCCCCCCCCCEEEEEE-EC-C----C--CEEEEEEEEC
T ss_conf 89587999999047977985178999854101375589-86-8----9--8499999979
No 28
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics; 2.30A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID}
Probab=98.62 E-value=1.5e-06 Score=57.38 Aligned_cols=164 Identities=18% Similarity=0.098 Sum_probs=104.8
Q ss_pred CCCCEEEEEEECCCCEEEECCCCCC-CCHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCC-----------------CCE
Q ss_conf 5771999999717976856267687-7889999999970-89879997111134345668-----------------963
Q gi|254780957|r 2 TRPEIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLT-TGNPVVMGYRTFQSIGRLLP-----------------GRT 62 (176)
Q Consensus 2 ~~~~i~~I~A~~~n~~IG~~~~lPW-~~~~Dl~~Fk~~T-~~~~vimGrkT~~sl~~pLp-----------------~R~ 62 (176)
.+|-|.+.+|++.+|-++.+|.==| .-|+|.++|..+- ...+|+.|.+|...=+--|. .=.
T Consensus 32 ~~P~v~~~~a~SlDGka~~~G~s~~is~~~dr~~~h~LRa~~DaIlvG~~Tv~~D~p~l~~r~~~~~~~r~~~g~~~~P~ 111 (270)
T 2p4g_A 32 NEPECRAIAITSINGSATLSGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGIKNQRQKLGRCGLPK 111 (270)
T ss_dssp HCCEEEEEEEEETTSBSCBTTBSGGGCCHHHHHHHHHHHHHCSEEEEEHHHHHHTTCCSCCCCHHHHHHHHHTTCCSSCE
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 99629999998475664789977687999999999999987998998813011447654324656655544216578996
Q ss_pred EEEEEECCCCCCC------CCC----CEEE---------------------------E----CCHHHHHHHHCCCCCCEE
Q ss_conf 8999214774345------689----8599---------------------------9----018898876323798459
Q gi|254780957|r 63 NIIITRDNTRRAS------VNP----EAVL---------------------------A----SSILDSLDLASKTGSKKI 101 (176)
Q Consensus 63 niVlTr~~~~~~~------~~~----~~~~---------------------------~----~s~~~al~~~~~~~~~~i 101 (176)
-+|++++.....+ ..+ -..+ . .++.++++.+.+.+...|
T Consensus 112 ~vVld~~~~~~~~~~l~~~~~~~~~~~iv~t~~~~~~~~~~~~~~~~l~~~~~~v~~~~~~~~dl~~~l~~L~~~Gi~~v 191 (270)
T 2p4g_A 112 LTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIAFDALHARRLKKI 191 (270)
T ss_dssp EEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCCCCCCCHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 89825777888532221367777413799825765423556788888752472675078888799999999875698727
Q ss_pred EEECHHHHHHHHH--HHCCEEEEEEECCCCCCCE--EC----CCCCHHHEEEEEEEEEECCCCCCCCCEEEEEEEEECC
Q ss_conf 9971088998742--0058999987738627847--66----5789556089856651026888887369999998012
Q gi|254780957|r 102 FIIGGGEIYAQTI--SLAHTLYITHIEKEIEGDV--FF----PSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFLS 172 (176)
Q Consensus 102 ~IIGG~~IY~~~l--~~~d~l~iT~I~~~~egD~--~f----P~id~~~~~~~~~~~~~~~~e~n~~~y~f~~y~R~~~ 172 (176)
+|=||+++..+|+ .++||+++|.-..-..++. .| +.-....|++...+. . .+ .+.|..|++...
T Consensus 192 LVEGG~~L~~s~l~~gLiDEl~l~iaP~llG~~~~~~~~~~~~~~~~~~~~L~~~~~----~-~~--g~lflRYr~~r~ 263 (270)
T 2p4g_A 192 SIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKISDDSFTTRLVLEMLSS----S-PN--GLIFSRYKVIRD 263 (270)
T ss_dssp EEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSCTTSCCCCCEEEEEEEE----C-TT--CCEEEEEEECCC
T ss_pred EEECCHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCCCCCCCCCCCEEEEEEE----E-CC--CEEEEEEEECCC
T ss_conf 996719999999872767389999878876799866656777555564634689999----2-49--979999878257
No 29
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=97.93 E-value=0.00037 Score=43.49 Aligned_cols=125 Identities=17% Similarity=0.238 Sum_probs=81.5
Q ss_pred CCCEEEEEEECCCCEEEECCCCC-CCCH---HHHHHHHHHHCCCEEEEEECCCCC----CC-C--CCCCCEEEEEEECCC
Q ss_conf 77199999971797685626768-7788---999999997089879997111134----34-5--668963899921477
Q gi|254780957|r 3 RPEIILIAAITRNNVIGSCGGMP-WKIS---SDLKRFKSLTTGNPVVMGYRTFQS----IG-R--LLPGRTNIIITRDNT 71 (176)
Q Consensus 3 ~~~i~~I~A~~~n~~IG~~~~lP-W~~~---~Dl~~Fk~~T~~~~vimGrkT~~s----l~-~--pLp~R~niVlTr~~~ 71 (176)
+|-|.+=+|++.||-|+..++-. |--. ....+.|. ...+|+.|.+|-.. |. | ....-.-+|++++..
T Consensus 159 rP~V~~K~A~SlDGkia~~~g~s~~it~~~~r~~h~lRa--~~DAIlvG~~Tv~~DnP~Lt~R~~~~~~P~rvIld~~~~ 236 (360)
T 2hxv_A 159 RPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRN--IYSAVLVGAGTVLKDNPQLTCRLKEGRNPVRVILDRKGV 236 (360)
T ss_dssp SCEEEEEEEEETTSEEECTTSCCTTSCSTTHHHHHHHHH--HSSEEEEEHHHHHHHCCCCCCCSTTSCCCEEEEECTTCT
T ss_pred CCEEEEEEEECCCCCEECCCCCCEECCHHHHHHHHHHHH--HCCCEEECCCCHHHCCCCCEEECCCCCCCCEEECCCCCC
T ss_conf 953999876759987344678735513100357899998--658604336734320861014555787894475575566
Q ss_pred CC------CCCCCCEEEE------------------CCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHCCEEEEEEECC
Q ss_conf 43------4568985999------------------01889887632379845999710889987420058999987738
Q gi|254780957|r 72 RR------ASVNPEAVLA------------------SSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEK 127 (176)
Q Consensus 72 ~~------~~~~~~~~~~------------------~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~~~d~l~iT~I~~ 127 (176)
.. ........++ .++.++++.+.+.+...|+|=||+.+..+|++..|+++++.-..
T Consensus 237 l~~~~~~~~~~~~~~ii~t~~~~~~~~~~~~~~~~~~dl~~iL~~L~~~Gi~slLVEGG~~L~~sfl~~~Dei~~f~APk 316 (360)
T 2hxv_A 237 LSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLDHADVVFGFYSTK 316 (360)
T ss_dssp TTTCCCGGGSSSSCEEEEESCSSCCCCTTSEEEECCCCHHHHHHHHHHTTCCEEEECCCHHHHHHHGGGCSEEEEEEESC
T ss_pred CCHHHHHEECCCCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHCCEEEEEECCH
T ss_conf 77455402304773158842531013046665024589999999998679989999236999999998599999998877
Q ss_pred CC
Q ss_conf 62
Q gi|254780957|r 128 EI 129 (176)
Q Consensus 128 ~~ 129 (176)
-.
T Consensus 317 il 318 (360)
T 2hxv_A 317 IF 318 (360)
T ss_dssp CC
T ss_pred HH
T ss_conf 75
No 30
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomics in europe, spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=97.86 E-value=0.00052 Score=42.60 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=86.8
Q ss_pred CCCCEEEEEEECCCCEEEE-CCCCCC-CCHHHH---HHHHHHHCCCEEEEEECCCCC----CC-C---------------
Q ss_conf 5771999999717976856-267687-788999---999997089879997111134----34-5---------------
Q gi|254780957|r 2 TRPEIILIAAITRNNVIGS-CGGMPW-KISSDL---KRFKSLTTGNPVVMGYRTFQS----IG-R--------------- 56 (176)
Q Consensus 2 ~~~~i~~I~A~~~n~~IG~-~~~lPW-~~~~Dl---~~Fk~~T~~~~vimGrkT~~s----l~-~--------------- 56 (176)
.+|-|.+=+|++.+|-|+. +|+--| .-++.. ++.|..- .+|+.|.+|... |. |
T Consensus 172 ~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vH~lRa~~--DAILVG~~Tv~~DnP~LtvR~~~~~~~~~~~~~~~ 249 (402)
T 2g6v_A 172 GFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQS--HAILTSSATVLADDPALTVRWSELDEQTQALYPQQ 249 (402)
T ss_dssp SSCEEEEEEEECTTCBBCC---CCSCSSCHHHHHHHHHHHHHC--SEEEEEHHHHHHHCCCCCCCGGGCCGGGTSSCCGG
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH--CEEECCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 5717999995227776444578744365788999999988620--00432678431238833350366301011125544
Q ss_pred CCCCCEEEEEEECCCCCC-----CCCCCEEEE------------------------CCHHHHHHHHCCCCCCEEEEECHH
Q ss_conf 668963899921477434-----568985999------------------------018898876323798459997108
Q gi|254780957|r 57 LLPGRTNIIITRDNTRRA-----SVNPEAVLA------------------------SSILDSLDLASKTGSKKIFIIGGG 107 (176)
Q Consensus 57 pLp~R~niVlTr~~~~~~-----~~~~~~~~~------------------------~s~~~al~~~~~~~~~~i~IIGG~ 107 (176)
.++.-..+|++++..... .......++ -++.++++.+.+.+...|+|=||+
T Consensus 250 ~~~~P~riVld~~~rl~~~~~if~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~~~~ldl~~iL~~L~~~Gi~~LLVEGG~ 329 (402)
T 2g6v_A 250 NLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGP 329 (402)
T ss_dssp GCCCCEEEEECTTCCCCTTSGGGSSSSCEEEEESSCCCSCCCTTEEEEECCEETTEECHHHHHHHHHHTTCCEEEECCCH
T ss_pred CCCCCCEEEECCCCCCCHHHHHHCCCCCEEEEECCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 56898415667888998467631378847997240445665202203686324774049999999987699999994279
Q ss_pred HHHHHHHH--HCCEEEEEEECCCCCCC
Q ss_conf 89987420--05899998773862784
Q gi|254780957|r 108 EIYAQTIS--LAHTLYITHIEKEIEGD 132 (176)
Q Consensus 108 ~IY~~~l~--~~d~l~iT~I~~~~egD 132 (176)
++..+||. ++|+++++.-.....+|
T Consensus 330 ~L~~sfL~~~LvDEl~i~iAPkilG~~ 356 (402)
T 2g6v_A 330 TLAGALLQAGLVDELIVYIAPKLLGSD 356 (402)
T ss_dssp HHHHHHHHHTCCCEEEEEECSCCCSSS
T ss_pred HHHHHHHHCCCCCEEEEEECCHHHCCC
T ss_conf 999999876981399989877644899
No 31
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=97.70 E-value=0.0009 Score=41.21 Aligned_cols=127 Identities=17% Similarity=0.322 Sum_probs=83.7
Q ss_pred CCCEEEEEEECCCCEEEEC-CCCCC-CCHHHH---HHHHHHHCCCEEEEEECCCCC----CC-C---CCCCCEEEEEEEC
Q ss_conf 7719999997179768562-67687-788999---999997089879997111134----34-5---6689638999214
Q gi|254780957|r 3 RPEIILIAAITRNNVIGSC-GGMPW-KISSDL---KRFKSLTTGNPVVMGYRTFQS----IG-R---LLPGRTNIIITRD 69 (176)
Q Consensus 3 ~~~i~~I~A~~~n~~IG~~-~~lPW-~~~~Dl---~~Fk~~T~~~~vimGrkT~~s----l~-~---pLp~R~niVlTr~ 69 (176)
+|-|.+=+|++.||-|+.. |+=-| .-++.. +..|.. ..+|+.|.+|... |. | .-+.-.-||++++
T Consensus 157 rP~V~lK~A~SlDGkia~~~g~s~wIT~~~sr~~vh~lRa~--~DAIlvG~~Tv~~DnP~Lt~R~~~~~~~P~riV~d~~ 234 (373)
T 2b3z_A 157 LPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQQYRKT--HQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTV 234 (373)
T ss_dssp SCEEEEEEEEETTSBSSCTTSCCTTSSCHHHHHHHTTHHHH--SSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEEEECTT
T ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH--CCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCC
T ss_conf 97699999856876533346874015777788999875552--5358982288445387022457775679818984355
Q ss_pred CCCCC-------CCCCC--------------------EEEE------CCHHHHHHHHCCCCCCEEEEECHHHHHHHHHH-
Q ss_conf 77434-------56898--------------------5999------01889887632379845999710889987420-
Q gi|254780957|r 70 NTRRA-------SVNPE--------------------AVLA------SSILDSLDLASKTGSKKIFIIGGGEIYAQTIS- 115 (176)
Q Consensus 70 ~~~~~-------~~~~~--------------------~~~~------~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l~- 115 (176)
..... ...+. +.++ .++.++++.+.+.+...++|=||+.+..+||.
T Consensus 235 l~~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~vi~~~~~~l~l~~il~~L~~~Gi~~lLVEGG~~L~~sfL~~ 314 (373)
T 2b3z_A 235 LSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKE 314 (373)
T ss_dssp CCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHTTCCEEEEEECHHHHHHHHHH
T ss_pred CCCCCHHHEECCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHC
T ss_conf 54241233000478870355136654677898886187144310013457999999877598889990579999999977
Q ss_pred -HCCEEEEEEECCCCCC
Q ss_conf -0589999877386278
Q gi|254780957|r 116 -LAHTLYITHIEKEIEG 131 (176)
Q Consensus 116 -~~d~l~iT~I~~~~eg 131 (176)
++|+++++.-..-..+
T Consensus 315 ~LvDEl~l~iAPkilGg 331 (373)
T 2b3z_A 315 GCFQEIIFYFAPKLIGG 331 (373)
T ss_dssp TCCSEEEEEEESBCCCC
T ss_pred CCHHEEEEEECCCEECC
T ss_conf 76108876887831078
No 32
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=54.12 E-value=10 Score=17.60 Aligned_cols=72 Identities=17% Similarity=0.256 Sum_probs=38.4
Q ss_pred EEEEEECCCCCCCCCCC--CCEEEEEEECCCCC---------CCCC-CCEE--------EECCHHHHHHHHCCCCCCEEE
Q ss_conf 79997111134345668--96389992147743---------4568-9859--------990188988763237984599
Q gi|254780957|r 43 PVVMGYRTFQSIGRLLP--GRTNIIITRDNTRR---------ASVN-PEAV--------LASSILDSLDLASKTGSKKIF 102 (176)
Q Consensus 43 ~vimGrkT~~sl~~pLp--~R~niVlTr~~~~~---------~~~~-~~~~--------~~~s~~~al~~~~~~~~~~i~ 102 (176)
-|+.|+.....+|.-+. +++.+|+|-...++ .... -... ...+++++.+.+.+...+-|.
T Consensus 12 kvi~G~g~l~~l~~~~~~~g~r~lvv~d~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~t~~~v~~~~~~~~~~~~D~Iv 91 (370)
T 1jq5_A 12 KYVQGKNVITKIANYLEGIGNKTVVIADEIVWKIAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVI 91 (370)
T ss_dssp EEEEETTGGGGHHHHHTTTCSEEEEEECHHHHHHTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 49987599999999999779959999897688999999999998779969999959999999999999997604887899
Q ss_pred EECHHHHHHHHH
Q ss_conf 971088998742
Q gi|254780957|r 103 IIGGGEIYAQTI 114 (176)
Q Consensus 103 IIGG~~IY~~~l 114 (176)
-+||+++...+-
T Consensus 92 avGGGs~~D~aK 103 (370)
T 1jq5_A 92 GVGGGKTLDTAK 103 (370)
T ss_dssp EEESHHHHHHHH
T ss_pred ECCCCCCCCHHH
T ss_conf 737863020121
No 33
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=47.69 E-value=10 Score=17.62 Aligned_cols=72 Identities=22% Similarity=0.204 Sum_probs=37.5
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEEEC---CHHHHHHHHCC-CCCCEEEEECHH----------HHHHHHHHHCCEEE
Q ss_conf 56689638999214774345689859990---18898876323-798459997108----------89987420058999
Q gi|254780957|r 56 RLLPGRTNIIITRDNTRRASVNPEAVLAS---SILDSLDLASK-TGSKKIFIIGGG----------EIYAQTISLAHTLY 121 (176)
Q Consensus 56 ~pLp~R~niVlTr~~~~~~~~~~~~~~~~---s~~~al~~~~~-~~~~~i~IIGG~----------~IY~~~l~~~d~l~ 121 (176)
+++|+|.-+|...+...-.- ....++ +++.+++.+.+ .+.+.+++++|. ..+..++.++|.++
T Consensus 307 ~gv~~R~e~v~~~~~~~i~v---idDYAHnP~ai~a~l~~l~~~~~~~~ii~vf~~~~~~r~~~~~~~~~~a~~~aD~vi 383 (469)
T 1j6u_A 307 RGVHRRFSIAFHDPETNIYV---IDDYAHTPDEIRNLLQTAKEVFENEKIVVIFQPHRYSRLEREDGNFAKALQLADEVV 383 (469)
T ss_dssp CCCTTSSEEEEEETTTTEEE---EEECCCSHHHHHHHHHHHHHHCSSSEEEEEECCBC--------CHHHHHHTTSSEEE
T ss_pred CCCCCCEEEEEECCCCCCEE---EEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 78788447998628888346---640468989999999999976589828999979888646777899999997099999
Q ss_pred EEEECCCCC
Q ss_conf 987738627
Q gi|254780957|r 122 ITHIEKEIE 130 (176)
Q Consensus 122 iT~I~~~~e 130 (176)
+|.++...|
T Consensus 384 lt~~~~~~E 392 (469)
T 1j6u_A 384 VTEVYDAFE 392 (469)
T ss_dssp ECCCBC---
T ss_pred ECCCCCCCC
T ss_conf 999889988
No 34
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthase; TM0166, structural genomics, JCSG, PSI, protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=45.14 E-value=13 Score=16.88 Aligned_cols=70 Identities=11% Similarity=0.042 Sum_probs=37.4
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCC-CCCC-EEEEECHH------HHHHHHHHHCCEEEEEEECC
Q ss_conf 5668963899921477434568985999018898876323-7984-59997108------89987420058999987738
Q gi|254780957|r 56 RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASK-TGSK-KIFIIGGG------EIYAQTISLAHTLYITHIEK 127 (176)
Q Consensus 56 ~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~-~~~~-~i~IIGG~------~IY~~~l~~~d~l~iT~I~~ 127 (176)
..+|||..++-..++..-.+ .+.-..+++.+++.+++ .+.+ -++|+|.. ++.+.+.+.+|++++|.++.
T Consensus 302 ~~~pGR~e~i~~~~~~viiD---~AHNp~ai~~ll~~l~~~~~~~~i~~V~G~~~dKD~~~~l~~l~~~~d~viit~~~~ 378 (442)
T 1o5z_A 302 AKNLGRFEILEKNGKMYILD---GAHNPHGAESLVRSLKLYFNGEPLSLVIGILDDKNREDILRKYTGIFERVIVTRVPS 378 (442)
T ss_dssp CCCTTSSEEEEETTEEEEEC---CCCSHHHHHHHHHHHHHHCTTCCEEEEECCCTTSCHHHHHGGGTTTCSEEEECCCSS
T ss_pred CCCCCCCCCCCCCCCEEEEE---CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCC
T ss_conf 66899774423667569997---787989999999999887456874899985079899999999885579999989999
Q ss_pred C
Q ss_conf 6
Q gi|254780957|r 128 E 128 (176)
Q Consensus 128 ~ 128 (176)
.
T Consensus 379 ~ 379 (442)
T 1o5z_A 379 P 379 (442)
T ss_dssp T
T ss_pred C
T ss_conf 6
No 35
>1ltk_A Phosphoglycerate kinase; PGK, glycolysis, glycerol, open conformation, ADP complex, selenomethionine, transferase; HET: AMP; 3.00A {Plasmodium falciparum} SCOP: c.86.1.1
Probab=38.59 E-value=20 Score=15.87 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=22.2
Q ss_pred CCCCEEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 79845999710889------987420058999987
Q gi|254780957|r 96 TGSKKIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 96 ~~~~~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
....-++|+||+.+ .+.+++.+|.+.++=
T Consensus 212 ~~~P~vaIlGGaKvsdKi~~i~~l~~k~D~iiigG 246 (425)
T 1ltk_A 212 PQRPLLAILGGAKVSDKIQLIKNLLDKVDRMIIGG 246 (425)
T ss_dssp CCSSEEEEEECSCSGGGHHHHHHHHTTCSEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHCCEEEECC
T ss_conf 78884699837741207999998886247289642
No 36
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3
Probab=37.60 E-value=15 Score=16.57 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=19.6
Q ss_pred HHHHHHHHCCCCCC-EEEEECHHHHHH-HHHHHCCEE
Q ss_conf 88988763237984-599971088998-742005899
Q gi|254780957|r 86 ILDSLDLASKTGSK-KIFIIGGGEIYA-QTISLAHTL 120 (176)
Q Consensus 86 ~~~al~~~~~~~~~-~i~IIGG~~IY~-~~l~~~d~l 120 (176)
+.+.++.+...+.+ -.|||||+.=.. ..+..+|..
T Consensus 88 fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~~~~a~~~ 124 (167)
T 1to0_A 88 LADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRADEK 124 (167)
T ss_dssp HHHHHHHHHTTTCCEEEEEECCSSCCCHHHHHHCSEE
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCE
T ss_conf 9999999986599628999668888898899626857
No 37
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=35.87 E-value=22 Score=15.61 Aligned_cols=73 Identities=11% Similarity=0.286 Sum_probs=43.2
Q ss_pred CEEEEEECCCCCCCCCCC--CCEEEEEEECCCCCC------------CCCCCEEEE---------CCHHHHHHHHCCCCC
Q ss_conf 879997111134345668--963899921477434------------568985999---------018898876323798
Q gi|254780957|r 42 NPVVMGYRTFQSIGRLLP--GRTNIIITRDNTRRA------------SVNPEAVLA---------SSILDSLDLASKTGS 98 (176)
Q Consensus 42 ~~vimGrkT~~sl~~pLp--~R~niVlTr~~~~~~------------~~~~~~~~~---------~s~~~al~~~~~~~~ 98 (176)
.-|+.|+...+.++.-+. +++.+|+|-+..... ...-.+.++ .+++++++.+.+.+.
T Consensus 20 ~~i~~G~g~l~~l~~~l~~~g~r~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~vf~~v~~~p~~~~v~~~~~~~~~~~~ 99 (371)
T 1o2d_A 20 TDVFFGEKILEKRGNIIDLLGKRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSF 99 (371)
T ss_dssp CEEEESTTHHHHHGGGGGGTCSEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCC
T ss_pred CEEEECCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 88998369999999999975995899976868887359999999998769859996886689799999999999985499
Q ss_pred CEEEEECHHHHHHHHH
Q ss_conf 4599971088998742
Q gi|254780957|r 99 KKIFIIGGGEIYAQTI 114 (176)
Q Consensus 99 ~~i~IIGG~~IY~~~l 114 (176)
+-|.=+||+++...+-
T Consensus 100 D~IvavGGGs~iD~aK 115 (371)
T 1o2d_A 100 DFVVGLGGGSPMDFAK 115 (371)
T ss_dssp SEEEEEESHHHHHHHH
T ss_pred CEEEEECCCCCCHHHH
T ss_conf 8899828976120899
No 38
>1vpe_A Phosphoglycerate kinase; transferase, hyperthermostability, crystal, AMP-PNP, 3-PGA; HET: ANP 3PG; 2.00A {Thermotoga maritima} SCOP: c.86.1.1
Probab=34.78 E-value=23 Score=15.50 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=21.3
Q ss_pred CCCCEEEEECHHHHH------HHHHHHCCEEEEE
Q ss_conf 798459997108899------8742005899998
Q gi|254780957|r 96 TGSKKIFIIGGGEIY------AQTISLAHTLYIT 123 (176)
Q Consensus 96 ~~~~~i~IIGG~~IY------~~~l~~~d~l~iT 123 (176)
....-+.|+||+.+- +.+++.+|.+++.
T Consensus 184 ~~~P~~aIlGGaKisdKi~ll~~l~~k~D~iiig 217 (398)
T 1vpe_A 184 PEKPYVVVLGGAKVSDKIGVITNLMEKADRILIG 217 (398)
T ss_dssp CCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEEC
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHCEEEEC
T ss_conf 8997699995353304999999999860420226
No 39
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3
Probab=34.78 E-value=15 Score=16.65 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=20.3
Q ss_pred HHHHHHHHCCCCCCEEEEECHHHHHHH-HHHHCCEE
Q ss_conf 889887632379845999710889987-42005899
Q gi|254780957|r 86 ILDSLDLASKTGSKKIFIIGGGEIYAQ-TISLAHTL 120 (176)
Q Consensus 86 ~~~al~~~~~~~~~~i~IIGG~~IY~~-~l~~~d~l 120 (176)
+.+.+..+...+.+-+|||||+.=..+ .+..+|..
T Consensus 84 fA~~l~~~~~~g~~i~fiIGGa~G~~~~~~~~a~~~ 119 (155)
T 1ns5_A 84 LAAELERWKLDGRDVSLLIGGPEGLSPACKAAAEQS 119 (155)
T ss_dssp HHHHHHHHHHHCSCEEEEECBTTBCCHHHHHHCSEE
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCE
T ss_conf 999999999659987999967875588999851958
No 40
>1v6s_A Phosphoglycerate kinase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 1.50A {Thermus thermophilus} SCOP: c.86.1.1 PDB: 2ie8_A
Probab=34.46 E-value=23 Score=15.47 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=21.8
Q ss_pred CCCC-EEEEECHHHH------HHHHHHHCCEEEEE
Q ss_conf 7984-5999710889------98742005899998
Q gi|254780957|r 96 TGSK-KIFIIGGGEI------YAQTISLAHTLYIT 123 (176)
Q Consensus 96 ~~~~-~i~IIGG~~I------Y~~~l~~~d~l~iT 123 (176)
.+.+ -+.|+||+.| .+.+++.+|.++++
T Consensus 181 ~p~rP~~aIlGGaKisdKi~~i~~L~~k~D~Iiig 215 (390)
T 1v6s_A 181 DPERPYAVVLGGAKVSDKIGVIESLLPRIDRLLIG 215 (390)
T ss_dssp SCCSSEEEEECCSCGGGTHHHHHHHGGGCSEEEEC
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEC
T ss_conf 88997599984774777999999999865999978
No 41
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=33.88 E-value=24 Score=15.42 Aligned_cols=67 Identities=12% Similarity=0.148 Sum_probs=33.2
Q ss_pred CCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECH--------HHHHHH----HHH-HCCEEEE
Q ss_conf 566896389992147743456898599901889887632379845999710--------889987----420-0589999
Q gi|254780957|r 56 RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGG--------GEIYAQ----TIS-LAHTLYI 122 (176)
Q Consensus 56 ~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG--------~~IY~~----~l~-~~d~l~i 122 (176)
++.|+|...+...+...-..+. -..-..|+..+++.+.+.+.+.++|+|| .+.+.+ +.. -+|.+++
T Consensus 311 ~~v~~R~~~~~~~~~~~~idD~-y~~np~s~~a~l~~l~~~~~~ki~i~g~~~elG~~~~~~~~~i~~~~~~~~~d~vi~ 389 (452)
T 1gg4_A 311 KAVPGRLFPIQLAENQLLLDDS-YNANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLS 389 (452)
T ss_dssp CCCTTSSEEEEEETTEEEEECC-SCCCHHHHHHHHHHHHHSSSEEEEEECCCCCCTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHEEEEECCCCEEEEEC-CCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 5998311589842895799824-768979999999999866898399999768788647999999999998579999999
Q ss_pred E
Q ss_conf 8
Q gi|254780957|r 123 T 123 (176)
Q Consensus 123 T 123 (176)
+
T Consensus 390 ~ 390 (452)
T 1gg4_A 390 V 390 (452)
T ss_dssp E
T ss_pred E
T ss_conf 7
No 42
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=33.34 E-value=24 Score=15.36 Aligned_cols=83 Identities=12% Similarity=0.274 Sum_probs=49.0
Q ss_pred HHHHHHHHCCC-------EEEEEECCCCCCCCCCCC-CEEEEEEECCCCC---------CC-CCCCEEEE---------C
Q ss_conf 99999970898-------799971111343456689-6389992147743---------45-68985999---------0
Q gi|254780957|r 32 LKRFKSLTTGN-------PVVMGYRTFQSIGRLLPG-RTNIIITRDNTRR---------AS-VNPEAVLA---------S 84 (176)
Q Consensus 32 l~~Fk~~T~~~-------~vimGrkT~~sl~~pLp~-R~niVlTr~~~~~---------~~-~~~~~~~~---------~ 84 (176)
-..+|..+|++ -|+.|+...+.+|.-+++ ++.+|++...... .. ..-++.++ .
T Consensus 14 ~~~~~~~~M~~f~f~~P~~I~fG~gal~~l~~~~~~~~r~llV~~~~~~~~~g~~~~v~~~L~g~~v~~f~~v~~~P~~~ 93 (408)
T 1oj7_A 14 TSLYKKAGLNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKTGVLDQVLDALKGMDVLEFGGIEPNPAYE 93 (408)
T ss_dssp -----CBCCCCEEEEEEEEEEESTTGGGGHHHHSCTTCEEEEEECSSHHHHHSHHHHHHHHTTTSEEEEECCCCSSCBHH
T ss_pred HHHHHHCCCCCCEECCCCEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHCCHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 44475378788673189858988499999999986799689998952787753999999982799179980823798999
Q ss_pred CHHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 188988763237984599971088998742
Q gi|254780957|r 85 SILDSLDLASKTGSKKIFIIGGGEIYAQTI 114 (176)
Q Consensus 85 s~~~al~~~~~~~~~~i~IIGG~~IY~~~l 114 (176)
+++++++.+.+.+.+-|.=+||+++...+-
T Consensus 94 ~v~~~~~~~r~~~~D~IIavGGGS~iD~AK 123 (408)
T 1oj7_A 94 TLMNAVKLVREQKVTFLLAVGGGSVLDGTK 123 (408)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHH
T ss_conf 999999999755998899808963433345
No 43
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=33.23 E-value=15 Score=16.52 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=20.9
Q ss_pred HHHHHHHHCCCCCCEEEEECHHHHH-HHHHHHCCEE
Q ss_conf 8898876323798459997108899-8742005899
Q gi|254780957|r 86 ILDSLDLASKTGSKKIFIIGGGEIY-AQTISLAHTL 120 (176)
Q Consensus 86 ~~~al~~~~~~~~~~i~IIGG~~IY-~~~l~~~d~l 120 (176)
+.+.++.+.....+-+|||||+.=. ++.+..+|..
T Consensus 83 fA~~L~~~~~~g~~i~FvIGGa~Gl~~~~~~~a~~~ 118 (163)
T 1o6d_A 83 FADFLKDLEMKGKDITILIGGPYGLNEEIFAKAHRV 118 (163)
T ss_dssp HHHHHHHHHHHTCCEEEEECCTTCCCGGGGGGCSEE
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHCCE
T ss_conf 999999998368856999967888799999861868
No 44
>3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=32.74 E-value=25 Score=15.31 Aligned_cols=72 Identities=11% Similarity=0.195 Sum_probs=41.1
Q ss_pred EEEEEECCCCCCC---CCCCCCEEEEEEECCCCC------CCC-CCCEEE---------ECCHHHHHHHHCCCCCCEEEE
Q ss_conf 7999711113434---566896389992147743------456-898599---------901889887632379845999
Q gi|254780957|r 43 PVVMGYRTFQSIG---RLLPGRTNIIITRDNTRR------ASV-NPEAVL---------ASSILDSLDLASKTGSKKIFI 103 (176)
Q Consensus 43 ~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~------~~~-~~~~~~---------~~s~~~al~~~~~~~~~~i~I 103 (176)
-|+.|+...+.++ +.|-.++.+|+|...... ... ...+.+ ..+++++.+.+.+...+-|.=
T Consensus 14 ~i~fG~g~l~~l~~~~~~~g~~r~livt~~~~~~~~~~v~~~l~~~~~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 93 (353)
T 3hl0_A 14 RIVFSAGSSADVAEEIRRLGLSRALVLSTPQQKGDAEALASRLGRLAAGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVS 93 (353)
T ss_dssp CEEECTTGGGGHHHHHHHTTCCCEEEECCGGGHHHHHHHHHHHGGGEEEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 28989699999999999749986999978312137999999860688089962516999899999999999639988999
Q ss_pred ECHHHHHHHHH
Q ss_conf 71088998742
Q gi|254780957|r 104 IGGGEIYAQTI 114 (176)
Q Consensus 104 IGG~~IY~~~l 114 (176)
+||+++...+-
T Consensus 94 vGGGs~iD~aK 104 (353)
T 3hl0_A 94 LGGGSTTGLGK 104 (353)
T ss_dssp EESHHHHHHHH
T ss_pred ECCCCCCCHHH
T ss_conf 58863001334
No 45
>2wzb_A Phosphoglycerate kinase 1; hereditary hemolytic anemia, transferase, phosphoprotein, glycolysis, nucleotide-binding; HET: ADP 3PG; 1.47A {Homo sapiens} PDB: 2wzc_A* 3c3b_A* 2zgv_A* 3c3a_A* 3c39_A* 3c3c_A* 2wzd_A* 1vjd_A* 1vjc_A* 1kf0_A* 1hdi_A* 2p9t_A* 2p9q_A* 2paa_A*
Probab=31.86 E-value=26 Score=15.22 Aligned_cols=27 Identities=15% Similarity=0.308 Sum_probs=21.0
Q ss_pred CCEEEEECHHHHH------HHHHHHCCEEEEEE
Q ss_conf 8459997108899------87420058999987
Q gi|254780957|r 98 SKKIFIIGGGEIY------AQTISLAHTLYITH 124 (176)
Q Consensus 98 ~~~i~IIGG~~IY------~~~l~~~d~l~iT~ 124 (176)
..-++|+||+.+- +.+++.+|.++++=
T Consensus 205 rP~vaIlGGaKisdKi~vi~~Ll~k~d~iiigG 237 (416)
T 2wzb_A 205 RPFLAILGGAKVADKIQLINNMLDKVNEMIIGG 237 (416)
T ss_dssp SSEEEEECSSCHHHHGGGHHHHTTTCSEEEECG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCEEECC
T ss_conf 884799843762228999999986328389660
No 46
>1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1
Probab=31.68 E-value=26 Score=15.20 Aligned_cols=26 Identities=15% Similarity=0.342 Sum_probs=19.0
Q ss_pred CEEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 45999710889------987420058999987
Q gi|254780957|r 99 KKIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 99 ~~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
--+.|+||+.| .+.+++.+|.++++=
T Consensus 134 P~vaIlGGaKvsdKI~vi~~Ll~kvD~IiigG 165 (416)
T 1fw8_A 134 PFLAILGGAKVADKIQLIDNLLDKVDSIIIGG 165 (416)
T ss_dssp SEEEEEECSCSTTTHHHHHHHHTTCSEEEEEG
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHCEEEECC
T ss_conf 81899304413157999999997621355261
No 47
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134}
Probab=30.54 E-value=27 Score=15.09 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=23.6
Q ss_pred CCHHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 0188988763237984599971088998742
Q gi|254780957|r 84 SSILDSLDLASKTGSKKIFIIGGGEIYAQTI 114 (176)
Q Consensus 84 ~s~~~al~~~~~~~~~~i~IIGG~~IY~~~l 114 (176)
.+++++.+.+.+.+.+-|.=+||+++...+-
T Consensus 76 ~~v~~~~~~~~~~~~D~IiavGGGs~iD~aK 106 (358)
T 3jzd_A 76 ESARDATARAREAGADCAVAVGGGSTTGLGK 106 (358)
T ss_dssp HHHHHHHHHHHHHTCSEEEEEESHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 9999999999974999899968845456541
No 48
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2
Probab=28.60 E-value=29 Score=14.89 Aligned_cols=72 Identities=19% Similarity=0.290 Sum_probs=40.5
Q ss_pred EEEEEECCCCCCCC---CCCCCEEEEEEECCCCC------------CCCCCCEEEE---------CCHHHHHHHHCCCCC
Q ss_conf 79997111134345---66896389992147743------------4568985999---------018898876323798
Q gi|254780957|r 43 PVVMGYRTFQSIGR---LLPGRTNIIITRDNTRR------------ASVNPEAVLA---------SSILDSLDLASKTGS 98 (176)
Q Consensus 43 ~vimGrkT~~sl~~---pLp~R~niVlTr~~~~~------------~~~~~~~~~~---------~s~~~al~~~~~~~~ 98 (176)
-|+.|+...+.+|. .+.-++.+|+|-..... ....-.+.++ .+++++.+.+.+.+.
T Consensus 23 ~i~fG~g~l~~l~~~l~~~g~kkvliVt~~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~pt~~~v~~~~~~~~~~~~ 102 (407)
T 1vlj_A 23 KIVFGRGTIPKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKV 102 (407)
T ss_dssp EEEESTTCGGGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTC
T ss_pred EEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 59986299999999999659985899988757887529999999998659939998570799999999999999974599
Q ss_pred CEEEEECHHHHHHHHH
Q ss_conf 4599971088998742
Q gi|254780957|r 99 KKIFIIGGGEIYAQTI 114 (176)
Q Consensus 99 ~~i~IIGG~~IY~~~l 114 (176)
+-|.=+||+++...+-
T Consensus 103 D~IIavGGGS~iD~AK 118 (407)
T 1vlj_A 103 EAVLGVGGGSVVDSAK 118 (407)
T ss_dssp SEEEEEESHHHHHHHH
T ss_pred CEEEECCCCCHHHHHH
T ss_conf 7899549963415688
No 49
>1vh0_A Hypothetical UPF0247 protein SAV0024/SA0023; structural genomics, unknown function; 2.31A {Staphylococcus aureus} SCOP: c.116.1.3
Probab=28.26 E-value=26 Score=15.17 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=17.8
Q ss_pred HHHHHHHHCCCCC-CEEEEECHHHHHHH-HHHHCCEE
Q ss_conf 8898876323798-45999710889987-42005899
Q gi|254780957|r 86 ILDSLDLASKTGS-KKIFIIGGGEIYAQ-TISLAHTL 120 (176)
Q Consensus 86 ~~~al~~~~~~~~-~~i~IIGG~~IY~~-~l~~~d~l 120 (176)
+.+.+......+. +-+|||||+.=... ....+|..
T Consensus 90 fA~~i~~~~~~g~~~i~FiIGGa~G~~~~~~~~a~~~ 126 (161)
T 1vh0_A 90 LAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYA 126 (161)
T ss_dssp HHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHHCSEE
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHCCCE
T ss_conf 9999999997499748999468755487999853887
No 50
>1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe}
Probab=28.01 E-value=30 Score=14.83 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=40.7
Q ss_pred CEEEEEECCCCCCC---CCCCCCEEEEEEECCCCCC----------CCCCCEEEE--------CCHHHHHHHHCCCCCCE
Q ss_conf 87999711113434---5668963899921477434----------568985999--------01889887632379845
Q gi|254780957|r 42 NPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRA----------SVNPEAVLA--------SSILDSLDLASKTGSKK 100 (176)
Q Consensus 42 ~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~~----------~~~~~~~~~--------~s~~~al~~~~~~~~~~ 100 (176)
.-+|.|+...+.++ +.|..|+.+|+|-....+. ...-.+.+. .+++.+.+.. +...+-
T Consensus 70 ~~~i~G~Gal~~l~~~l~~lg~kr~LIVtd~~~~~~~~~~v~~~L~~~gi~v~~~~~~~~pt~~~v~~~~~~~-~~~~D~ 148 (450)
T 1ta9_A 70 QKYVQGRHAFTRSYMYVKKWATKSAVVLADQNVWNICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQC-PDDTQV 148 (450)
T ss_dssp SEEEEETTGGGGHHHHHTTTCSSEEEEEEEHHHHHHTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTS-CTTCCE
T ss_pred CCEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHH-HCCCCE
T ss_conf 6669715999999999997399969999892488999999999998769979999718998999999999975-228998
Q ss_pred EEEECHHHHHHHHH
Q ss_conf 99971088998742
Q gi|254780957|r 101 IFIIGGGEIYAQTI 114 (176)
Q Consensus 101 i~IIGG~~IY~~~l 114 (176)
|.-+||+++...+-
T Consensus 149 IIAVGGGSviD~AK 162 (450)
T 1ta9_A 149 IIGVGGGKTMDSAK 162 (450)
T ss_dssp EEEEESHHHHHHHH
T ss_pred EEEECCCHHHHHHH
T ss_conf 99967963868889
No 51
>1php_A 3-phosphoglycerate kinase; HET: ADP; 1.65A {Geobacillus stearothermophilus} SCOP: c.86.1.1
Probab=27.95 E-value=30 Score=14.82 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=21.0
Q ss_pred CCCC-EEEEECHHHHH------HHHHHHCCEEEEE
Q ss_conf 7984-59997108899------8742005899998
Q gi|254780957|r 96 TGSK-KIFIIGGGEIY------AQTISLAHTLYIT 123 (176)
Q Consensus 96 ~~~~-~i~IIGG~~IY------~~~l~~~d~l~iT 123 (176)
.+.+ -+.|+||+.|- +.+++.+|.+.+.
T Consensus 184 ~p~rP~~aIiGGaKisdKi~~l~~l~~k~D~iiig 218 (394)
T 1php_A 184 NPDRPFTAIIGGAKVKDKIGVIDNLLEKVDNLIIG 218 (394)
T ss_dssp SCCSSEEEEECSSCHHHHHHHHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEEC
T ss_conf 88997699971573654899999997532415764
No 52
>16pk_A PGK, 3-phosphoglycerate kinase; ternary complex, glycolysis, transferase, bisubstrate, analog; HET: BIS EPE; 1.60A {Trypanosoma brucei} SCOP: c.86.1.1 PDB: 13pk_A*
Probab=27.54 E-value=31 Score=14.78 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=21.2
Q ss_pred CCCC-EEEEECHHHH------HHHHHHHCCEEEEE
Q ss_conf 7984-5999710889------98742005899998
Q gi|254780957|r 96 TGSK-KIFIIGGGEI------YAQTISLAHTLYIT 123 (176)
Q Consensus 96 ~~~~-~i~IIGG~~I------Y~~~l~~~d~l~iT 123 (176)
.+.+ -+.|+||+.| .+.+++.+|.+.+.
T Consensus 202 ~p~rP~vaIlGGaKisdKi~vl~~l~~k~D~iiig 236 (415)
T 16pk_A 202 NPPRPLVAIVGGAKVSDKIQLLDNMLQRIDYLLIG 236 (415)
T ss_dssp CCCSSEEEEECSSCSGGGHHHHHHHGGGCSEEEEC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCEEEEC
T ss_conf 99998489960566344899999999745824545
No 53
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=27.52 E-value=23 Score=15.45 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=29.1
Q ss_pred EEEECCCCCCCCCCCCCEEEE-EEECCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEEECHHH
Q ss_conf 997111134345668963899-9214774345689859990188988763237984599971088
Q gi|254780957|r 45 VMGYRTFQSIGRLLPGRTNII-ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGE 108 (176)
Q Consensus 45 imGrkT~~sl~~pLp~R~niV-lTr~~~~~~~~~~~~~~~~s~~~al~~~~~~~~~~i~IIGG~~ 108 (176)
|.|.++|.|+. .+|+..-+| +...+ ....++++.+.+.+.+.+|+-+|+.
T Consensus 54 I~G~~~y~sl~-dip~~iDlvvi~~p~-------------~~~~~il~e~~~~g~k~v~~q~G~~ 104 (138)
T 1y81_A 54 IEGLKCYRSVR-ELPKDVDVIVFVVPP-------------KVGLQVAKEAVEAGFKKLWFQPGAE 104 (138)
T ss_dssp ETTEECBSSGG-GSCTTCCEEEECSCH-------------HHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred ECCEECCCCCC-CCCCCCEEEEEEECH-------------HHHHHHHHHHHHCCCCEEEEECCHH
T ss_conf 83525444201-278753079998178-------------8879999999756999789607644
No 54
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=27.09 E-value=31 Score=14.73 Aligned_cols=74 Identities=12% Similarity=0.210 Sum_probs=41.4
Q ss_pred CCEEEEEECCCCCCC---CCCCCCEEEEEEECCCCC-----------CCCCCCEEE---------ECCHHHHHHHHCCCC
Q ss_conf 987999711113434---566896389992147743-----------456898599---------901889887632379
Q gi|254780957|r 41 GNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRR-----------ASVNPEAVL---------ASSILDSLDLASKTG 97 (176)
Q Consensus 41 ~~~vimGrkT~~sl~---~pLp~R~niVlTr~~~~~-----------~~~~~~~~~---------~~s~~~al~~~~~~~ 97 (176)
+..+..|+..++.+| +.|..++.+|+|...-.+ ....-.+.+ ..+++++++.+++.+
T Consensus 9 ~~~~~fG~g~~~~l~~~~~~~G~k~vlvv~~~~~~~~g~~~~i~~~L~~~gi~~~vf~~v~~~pt~~~v~~~~~~~~~~~ 88 (386)
T 1rrm_A 9 NETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSG 88 (386)
T ss_dssp CSEEEESTTGGGGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHT
T ss_pred CCCCEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99846987699999999997699879999897756582799999999875983999878479979999999865550358
Q ss_pred CCEEEEECHHHHHHHHH
Q ss_conf 84599971088998742
Q gi|254780957|r 98 SKKIFIIGGGEIYAQTI 114 (176)
Q Consensus 98 ~~~i~IIGG~~IY~~~l 114 (176)
.+-|.=+||+++...+-
T Consensus 89 ~D~IiavGGGs~iD~aK 105 (386)
T 1rrm_A 89 ADYLIAIGGGSPQDTCK 105 (386)
T ss_dssp CSEEEEEESHHHHHHHH
T ss_pred CCEEEECCCCCCCHHHH
T ss_conf 88799768864104899
No 55
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=26.45 E-value=29 Score=14.95 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=27.8
Q ss_pred HHCCCCCCEEEEECH--HHHHHHHHHHCCEEEEEEECCCC--CCCEECCCCCH
Q ss_conf 632379845999710--88998742005899998773862--78476657895
Q gi|254780957|r 92 LASKTGSKKIFIIGG--GEIYAQTISLAHTLYITHIEKEI--EGDVFFPSIDS 140 (176)
Q Consensus 92 ~~~~~~~~~i~IIGG--~~IY~~~l~~~d~l~iT~I~~~~--egD~~fP~id~ 140 (176)
.+....-++|.|||| +.+-++++.+-.++.+-+|+... -|-.|||.++.
T Consensus 67 l~~hp~pk~VLiIGgG~G~~~re~lk~~~~v~~VEiD~~Vi~~a~~~fp~~~d 119 (262)
T 2cmg_A 67 GCTKKELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHE 119 (262)
T ss_dssp HTTSSCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHH
T ss_pred HHCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCCCCCC
T ss_conf 75399867799945996699999845897479998389999999986842235
No 56
>3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylase; structural genomics, APC62130.1, methyltransferase, PSI-2; 2.00A {Bacteroides fragilis nctc 9343} PDB: 3fq6_A
Probab=25.07 E-value=34 Score=14.51 Aligned_cols=84 Identities=14% Similarity=0.279 Sum_probs=47.8
Q ss_pred ECCCCCCCCHHHHHHHHHHHC-CCEEEEEE------CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCHHHHHHH
Q ss_conf 626768778899999999708-98799971------11134345668963899921477434568985999018898876
Q gi|254780957|r 20 SCGGMPWKISSDLKRFKSLTT-GNPVVMGY------RTFQSIGRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDL 92 (176)
Q Consensus 20 ~~~~lPW~~~~Dl~~Fk~~T~-~~~vimGr------kT~~sl~~pLp~R~niVlTr~~~~~~~~~~~~~~~~s~~~al~~ 92 (176)
..|=||=+ ++..+.+++... +.++|+=- +|.+.|-..|-..+.|++.|..+... ......++.+.++.
T Consensus 22 F~GFLPkk-~~r~~~l~~~~~~~~t~V~fEsp~Rl~~~L~~l~~~~~~~r~i~iarELTK~~----E~~~~g~~~ei~~~ 96 (115)
T 3ffy_A 22 FEGFLPQK-KGRMTKLKSLVDEHRTMVFYESPHRLLKTLTQFAEYFGPERQVSVSREISKIH----EETVRGTLSELIEH 96 (115)
T ss_dssp EEESCCSS-TTHHHHHHHTTTCCSEEEEEECTTTHHHHHHHHHHHHCTTCEEEEEEESSSSC----EEEEEEEHHHHHHH
T ss_pred EEEECCCC-CCHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCEEEEEEECCCCC----EEEECCCHHHHHHH
T ss_conf 98767874-22258999841378809999718999999999998568996899998178540----16780869999998
Q ss_pred HCCC--CCCEEEEECHHH
Q ss_conf 3237--984599971088
Q gi|254780957|r 93 ASKT--GSKKIFIIGGGE 108 (176)
Q Consensus 93 ~~~~--~~~~i~IIGG~~ 108 (176)
+.+. ..+=+.||+|..
T Consensus 97 ~~~~~~KGE~viVI~g~~ 114 (115)
T 3ffy_A 97 FTATDPRGEIVIVLAGID 114 (115)
T ss_dssp HHHSCCCSSEEEEECCC-
T ss_pred HHCCCCCEEEEEEEECCC
T ss_conf 644898606999996588
No 57
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=23.89 E-value=36 Score=14.37 Aligned_cols=73 Identities=19% Similarity=0.327 Sum_probs=44.6
Q ss_pred CEEEEEECCCCCCCC---CCCCCEEEEEEECC-CCCC-----------C-CCCCEEE---------ECCHHHHHHHHCCC
Q ss_conf 879997111134345---66896389992147-7434-----------5-6898599---------90188988763237
Q gi|254780957|r 42 NPVVMGYRTFQSIGR---LLPGRTNIIITRDN-TRRA-----------S-VNPEAVL---------ASSILDSLDLASKT 96 (176)
Q Consensus 42 ~~vimGrkT~~sl~~---pLp~R~niVlTr~~-~~~~-----------~-~~~~~~~---------~~s~~~al~~~~~~ 96 (176)
.-+++|+..++.+|. -|..++.+|+|-.. .... . ..-.+.+ ..+++++++.+.+.
T Consensus 12 ~~i~fG~g~l~~l~~~~~~~g~kkvlivt~~~~~~~~~~~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~v~~~~~~~~~~ 91 (387)
T 3bfj_A 12 NVNFFGPNAISVVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRRE 91 (387)
T ss_dssp SEEEESTTGGGGHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHT
T ss_pred CEEEECCCHHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHC
T ss_conf 86898809999999999973998699998976786115699999999997699599983736899999999999988733
Q ss_pred CCCEEEEECHHHHHHHHH
Q ss_conf 984599971088998742
Q gi|254780957|r 97 GSKKIFIIGGGEIYAQTI 114 (176)
Q Consensus 97 ~~~~i~IIGG~~IY~~~l 114 (176)
+.+-|.=+||+++...+-
T Consensus 92 ~~D~IiavGGGs~iD~aK 109 (387)
T 3bfj_A 92 QCDIIVTVGGGSPHDCGK 109 (387)
T ss_dssp TCCEEEEEESHHHHHHHH
T ss_pred CCCEEEECCCCCCCCHHH
T ss_conf 998899808864000888
No 58
>1qpg_A PGK, 3-phosphoglycerate kinase; phosphotransferase (carboxyl acceptor), acetylation, glycolysis; HET: MAP 3PG; 2.40A {Saccharomyces cerevisiae} SCOP: c.86.1.1 PDB: 3pgk_A*
Probab=23.18 E-value=37 Score=14.29 Aligned_cols=29 Identities=14% Similarity=0.350 Sum_probs=21.8
Q ss_pred CCCC-EEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 7984-5999710889------987420058999987
Q gi|254780957|r 96 TGSK-KIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 96 ~~~~-~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
.+.+ -++|+||+.+ .+.+++.||.+++.=
T Consensus 200 ~p~rP~~aIlGGaKisdKi~~l~~l~~k~D~iiigG 235 (415)
T 1qpg_A 200 NPTRPFLAILGGAKVADKIQLIDNLLDKVDSIIIGG 235 (415)
T ss_dssp SCCSSEEEEECSSCSGGGHHHHHHHTTTCSEEEECG
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHCCEEEECC
T ss_conf 889986999725735358999998875301156352
No 59
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=22.38 E-value=27 Score=15.10 Aligned_cols=25 Identities=4% Similarity=0.061 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 78899999999708987999711113
Q gi|254780957|r 27 KISSDLKRFKSLTTGNPVVMGYRTFQ 52 (176)
Q Consensus 27 ~~~~Dl~~Fk~~T~~~~vimGrkT~~ 52 (176)
++.|=++...+.-- ++.+.+=-|..
T Consensus 13 sl~Ea~~ll~~~~~-~a~~laGGTdl 37 (287)
T 1ffv_C 13 SVGEAVALLGQLGS-DAKLLAGGHSL 37 (287)
T ss_dssp SHHHHHHHHHHHGG-GEEEESSCTTH
T ss_pred CHHHHHHHHHHHCC-CCEEEEECCCH
T ss_conf 99999999885199-98899706508
No 60
>1zmr_A Phosphoglycerate kinase; transferase, glycolysis; 2.40A {Escherichia coli}
Probab=21.56 E-value=40 Score=14.10 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=22.0
Q ss_pred CCCC-EEEEECHHHH------HHHHHHHCCEEEEEE
Q ss_conf 7984-5999710889------987420058999987
Q gi|254780957|r 96 TGSK-KIFIIGGGEI------YAQTISLAHTLYITH 124 (176)
Q Consensus 96 ~~~~-~i~IIGG~~I------Y~~~l~~~d~l~iT~ 124 (176)
.+.+ -++|+||+.+ .+.+++.+|.+.++=
T Consensus 180 ~p~~P~~aIlGGaKisdKi~vl~~l~~k~D~iiigG 215 (387)
T 1zmr_A 180 EPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGG 215 (387)
T ss_dssp SCSSSEEEEEEESCTTTTHHHHHHHHTTCSEEEEEE
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHCEEEEECH
T ss_conf 889986999506728789999999985105999870
No 61
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=20.97 E-value=41 Score=14.03 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=26.8
Q ss_pred CHHHHHHHHCC-CCCCEEEEECHHHH----------HHHHHHHCCEEEEEEECCCCC
Q ss_conf 18898876323-79845999710889----------987420058999987738627
Q gi|254780957|r 85 SILDSLDLASK-TGSKKIFIIGGGEI----------YAQTISLAHTLYITHIEKEIE 130 (176)
Q Consensus 85 s~~~al~~~~~-~~~~~i~IIGG~~I----------Y~~~l~~~d~l~iT~I~~~~e 130 (176)
++..+++.+.. .+...+.+++|... +...+..+|.++++.|+...+
T Consensus 358 si~a~l~al~~~~~~~~ii~i~~~~~~~~~~~~~~e~~~~l~~aD~vil~~i~~a~e 414 (491)
T 2f00_A 358 EVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYDDFANVLTQVDTLLMLEVYPAGE 414 (491)
T ss_dssp HHHHHHHHHHTTCCSSEEEEEECCBCHHHHTTTHHHHHHHHTTSSEEEECCCBCSSS
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCC
T ss_conf 999999999965899769999767787247999999999998699999966668866
Done!