RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780957|ref|YP_003065370.1| dihydrofolate reductase
protein [Candidatus Liberibacter asiaticus str. psy62]
(176 letters)
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann
fold, adenine nucleotide binding domain, antibiotic
resistance; HET: MTX NAP; 1.50A {Escherichia coli K12}
PDB: 1ddr_A* 1dds_A* 1ra9_A* 1dre_A* 1drh_A* 1dyi_A*
1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A*
1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* 1rf7_A*
... (A:)
Length = 159
Score = 149 bits (378), Expect = 2e-37
Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 7/164 (4%)
Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65
I LIAA+ + VIG MPW + +DL FK T PV+MG T++SIGR LPGR NII
Sbjct: 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNII 61
Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125
++ + S+ +++ +I +IGGG +Y Q + A LY+THI
Sbjct: 62 LSSQPG----TDDRVTWVKSVDEAIAACG--DVPEIMVIGGGRVYEQFLPKAQKLYLTHI 115
Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+ E+EGD FP + + W+ E A + + F I +R
Sbjct: 116 DAEVEGDTHFPDYEPDDWESVFSEFH-DADAQNSHSYCFEILER 158
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A
{Geobacillus stearothermophilus} (A:)
Length = 164
Score = 149 bits (377), Expect = 2e-37
Identities = 57/164 (34%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65
I I A+ N VIG +PW + +DL FK +T G+ +VMG +TF++IGR LPGR N++
Sbjct: 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTMGHAIVMGRKTFEAIGRPLPGRDNVV 61
Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125
+T + S PE L L+ + + + ++FIIGG E++ T+ + LY+T I
Sbjct: 62 VTGN----RSFRPEGCLVLHSLEEVKQWIASRADEVFIIGGAELFRATMPIVDRLYVTKI 117
Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
GD F+P I + W+ E + Y F+IY+R
Sbjct: 118 FASFPGDTFYPPISDDEWEIVSYTPGG-KDEKNPYEHAFIIYER 160
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate,
oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda}
PDB: 3ia5_A (A:)
Length = 162
Score = 146 bits (370), Expect = 2e-36
Identities = 60/164 (36%), Positives = 93/164 (56%), Gaps = 6/164 (3%)
Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65
+ +IAA+ N VIG MPW + ++L+ FK T G P+VMG TF+SIGR LPGR NI+
Sbjct: 3 VSMIAALANNRVIGLDNKMPWHLPAELQLFKRATLGKPIVMGRNTFESIGRPLPGRLNIV 62
Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125
++R + +++ D++ A +++ IIGG IY Q ++ A LY+THI
Sbjct: 63 LSRQTD---YQPEGVTVVATLEDAVVAAG--DVEELMIIGGATIYNQCLAAADRLYLTHI 117
Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
E EGD +FP + W++ E E A + + + RF + +R
Sbjct: 118 ELTTEGDTWFPDYEQYNWQEIEHESYA-ADDKNPHNYRFSLLER 160
>2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim,
oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A
{Staphylococcus aureus} PDB: 2w9g_A* 3fyw_X* 3fyv_X*
3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3fqc_A* 3fqz_A* 3f0u_X*
3fqf_A* 3fqo_A* 3fqv_A* 2w9s_A* 2w9t_A (A:)
Length = 159
Score = 146 bits (369), Expect = 2e-36
Identities = 51/164 (31%), Positives = 77/164 (46%), Gaps = 9/164 (5%)
Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65
+ ++ A VIG +PW + +DLK K L+TG+ +VMG +TF+SIG+ LP R N++
Sbjct: 3 LSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVV 62
Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125
+T D + + SI D L +FI GG ++ + I +YIT I
Sbjct: 63 LTSD---TSFNVEGVDVIHSIEDIYQLP-----GHVFIFGGQTLFEEMIDKVDDMYITVI 114
Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
E + GD FFP W+ E + P F+ R
Sbjct: 115 EGKFRGDTFFPPYTFEDWEVASSVEGK-LDEKNTIPHTFLHLIR 157
>3e0b_A Dihydrofolate reductase; oxidoreductase; HET: NAP N22; 2.25A
{Bacillus anthracis} PDB: 3dat_A* 2qk8_A* 3fl8_A*
3fl9_A* 2kgk_A* (A:)
Length = 166
Score = 145 bits (366), Expect = 4e-36
Identities = 55/169 (32%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPG 60
+ + A+ N VIG +PW++ S+L+ K T G+P++MG + +++IGR LPG
Sbjct: 3 HHM-RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPG 61
Query: 61 RTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTL 120
R NII+TR+ +A S+ + +L ++IFI GG +IY + L
Sbjct: 62 RRNIIVTRN---EGYHVEGCEVAHSVEEVFELCK--NEEEIFIFGGAQIYDLFLPYVDKL 116
Query: 121 YITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
YIT I EGD FFP +D WK+ E + E + Y + +Y++
Sbjct: 117 YITKIHHAFEGDTFFPEMDMTNWKEVFVEKGLT-DEKNPYTYYYHVYEK 164
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX;
1.70A {Lactobacillus casei} (A:)
Length = 162
Score = 133 bits (335), Expect = 2e-32
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 6/165 (3%)
Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI-GRLLPGRTNI 64
+ A RN +IG G +PW + DL F++ T G +V+G RT++S R LP RTN+
Sbjct: 1 TAFLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNV 60
Query: 65 IITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITH 124
++T AV+ + A + +++ I GG +I+ TL +T
Sbjct: 61 VLTHQED---YQAQGAVVVHDVAAVFAYAKQHLDQELVIAGGAQIFTAFKDDVDTLLVTR 117
Query: 125 IEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+ EGD ++ + + K T + ++ +
Sbjct: 118 LAGSFEGDTKMIPLNWDDFTKVSSR--TVEDTNPALTHTYEVWQK 160
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4
alpha helices, oxidoreductase; HET: NDP MTX; 1.95A
{Streptococcus pneumoniae} (A:)
Length = 190
Score = 130 bits (329), Expect = 8e-32
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 8/171 (4%)
Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG-RLLP 59
MT+ +I+ I A VIG +PW + ++L+ FK T + ++MG TF +G RLLP
Sbjct: 21 MTK-KIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTLNHAILMGRVTFDGMGRRLLP 79
Query: 60 GRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHT 119
R +I+TR+ + LD S K ++I+GG +I+
Sbjct: 80 KRETLILTRNPE---EKIDGVATFHDVQSVLDWYSAQE-KNLYIVGGKQIFQAFEPYLDE 135
Query: 120 LYITHIEKEIEGDVFFPS-IDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+ +THI +EGD +FP+ D ++++ + T E + Y R
Sbjct: 136 VIVTHIHARVEGDTYFPAEFDLSLFETVSSKFYTK-DEKNPYDFTIQYRKR 185
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic
enzyme; 2.55A {Haloferax volcanii} (A:)
Length = 162
Score = 128 bits (323), Expect = 4e-31
Identities = 46/166 (27%), Positives = 88/166 (53%), Gaps = 11/166 (6%)
Query: 5 EIILIAAITRNNVIGSCGGMPWK-ISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTN 63
E++ +AA+ N VIG G +PW I +D K+++S +PVV+G TF+S+ LPG
Sbjct: 2 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIADDPVVLGRTTFESMRDDLPGSAQ 61
Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYIT 123
I+++R + R+ A A+S+ +++D+A+ ++ ++IGG IYA + ++
Sbjct: 62 IVMSR--SERSFSVDTAHRAASVEEAVDIAASLDAETAYVIGGAAIYALFQPHLDRMVLS 119
Query: 124 HIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+ E EGD ++P D+ W+ + + + + + R
Sbjct: 120 RVPGEYEGDTYYPEWDAAEWELDAET------DHEGF--TLQEWVR 157
>2w3w_A Dihydrofolate reductase; nonclassical antifolates,
one-carbon metabolism, lipophilic antifolates, NADP,
oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium
avium} PDB: 2w3v_A* (A:)
Length = 167
Score = 125 bits (316), Expect = 2e-30
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 15/175 (8%)
Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRL--- 57
MTR E+ L+ A + + VIG G +PW + DL RFK +T G+ V+MG RT++S+
Sbjct: 1 MTRAEVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTMGHTVIMGRRTWESLPAKVRP 60
Query: 58 LPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLA 117
LPGR N++++R V A +A S+ +L A ++IGG +IY + A
Sbjct: 61 LPGRRNVVVSRR---PDFVAEGARVAGSLEAALAYA--GSDPAPWVIGGAQIYLLALPHA 115
Query: 118 HTLYITHIEKEI---EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+T IE ++ + D P++D + E RF Y R
Sbjct: 116 TRCEVTEIEIDLRRDDDDALAPALDDSWV----GETGEWLASRSGLRYRFHSYRR 166
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH,
oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage
T4} (A:)
Length = 193
Score = 125 bits (315), Expect = 3e-30
Identities = 36/188 (19%), Positives = 64/188 (34%), Gaps = 29/188 (15%)
Query: 5 EIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTN 63
G G+PW ++ DL+ FK+ T G ++MG +TFQS+ LLPGR++
Sbjct: 9 SPTKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTEGTIMIMGAKTFQSLPTLLPGRSH 68
Query: 64 IIITR--DNTRRASVNPEAVLASSI----------------LDSLDLASKTGSKKIFIIG 105
I++ + A + ++ + K+ +IG
Sbjct: 69 IVVCDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSVIG 128
Query: 106 GGEIYAQTISLAHTLYITHIEKEI------EGDVFFPSIDSNIWKKQEKEIITSAGEGDD 159
G + + A + ++ I K + D F S + E E
Sbjct: 129 GPALLYAALPYADEVVVSRIVKRHRVNSTVQLDASFLDDISK-REMVETHWYKI-DEVTT 186
Query: 160 YPTRFVIY 167
+Y
Sbjct: 187 L--TESVY 192
>3cse_A Dihydrofolate reductase; protein-ligand complex,
oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata}
PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* (A:)
Length = 227
Score = 120 bits (301), Expect = 1e-28
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 1 MTR-PEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLT-------TGNPVVMGYRTFQ 52
M++ P + ++AA+ IG G +PW+++ ++K F+ +T N V+MG +T++
Sbjct: 1 MSKVPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWE 60
Query: 53 SI---GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSL------DLASKTGSKKIFI 103
SI R LP R N++++R + + S+ L + LA++ ++I+I
Sbjct: 61 SIPQKFRPLPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYI 120
Query: 104 IGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTR 163
IGGGEIY Q++ LA IT I + P +D+ + K++ ++
Sbjct: 121 IGGGEIYRQSMDLADHWLITKI--MPLPETTIPQMDTFLQKQELEQRFYDN-SDKLVDFL 177
Query: 164 FVIYDR 169
Sbjct: 178 PSSIQL 183
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} (A:)
Length = 280
Score = 117 bits (293), Expect = 1e-27
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 11/174 (6%)
Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI---GRL 57
+T + +D+ K N VVMG ++SI +
Sbjct: 61 VTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSK--KLQNVVVMGRTNWESIPKKFKP 118
Query: 58 LPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTIS-- 115
L R N+I++R ++ + + + + + D + L K K FI+GG +Y + +
Sbjct: 119 LSNRINVILSR-TLKKEDFDEDVYIINKVEDLIVLLGKLNYYKCFILGGSVVYQEFLEKK 177
Query: 116 LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
L +Y T I E DVFFP I+ N ++ + + F+IY +
Sbjct: 178 LIKKIYFTRINSTYECDVFFPEINENEYQIISVSDVYT-SNNTTL--DFIIYKK 228
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor
design, folateanalogs, rossmann fold, nicotinamide
adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium
tuberculosis} (A:)
Length = 159
Score = 115 bits (290), Expect = 2e-27
Identities = 45/170 (26%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI---GRLLPGRT 62
+ LI A + VIG G +PW++ D F+ +T G+ +VMG RT+ S+ R LPGR
Sbjct: 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRR 61
Query: 63 NIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYI 122
N++++R + A + S+ + S + ++IGGG++YA + A +
Sbjct: 62 NVVLSRQ---ADFMASGAEVVGSLEE------ALTSPETWVIGGGQVYALALPYATRCEV 112
Query: 123 THIEKEI---EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
T ++ + GD P +D E R Y R
Sbjct: 113 TEVDIGLPREAGDALAPVLDETWR----GETGEWRFSRSGLRYRLYSYHR 158
>2h2q_A Bifunctional dihydrofolate reductase-thymidylate synthase;
bifunctional enzyme in complex with NADP and DUMP,
oxidoreductase, transferase; HET: NAP DU; 2.40A
{Trypanosoma cruzi} PDB: 3cl9_A* 3clb_A* 3hbb_A*
(A:16-234)
Length = 219
Score = 108 bits (270), Expect = 4e-25
Identities = 40/215 (18%), Positives = 70/215 (32%), Gaps = 46/215 (21%)
Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------------NPVVMG 47
+ L+ A+ IG +PW + D+K F+ +TT N VVMG
Sbjct: 3 LALRAFSLVVAVDERGGIGDGRSIPWNVPEDMKFFRDVTTKLRGKNVKPSPAKRNAVVMG 62
Query: 48 YRTFQSI---GRLLPGRTNIIITRD------------NTRRASVNPEAVLASSILDS--- 89
+T+ SI R LPGR N++++ +R V + L+
Sbjct: 63 RKTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALQ 122
Query: 90 --LDLASKTGSKKIFIIGGGEIYAQTISL-----AHTLYITHIEKEIEGDVFFPSIDSNI 142
+ ++ IGGG +YA+ + +Y T I F + +
Sbjct: 123 LLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYRTTIRASESSCSVFFRVPESG 182
Query: 143 WKKQEKEIITS--------AGEGDDYPTRFVIYDR 169
+ + G++ F
Sbjct: 183 TEAAAGIEWQRETISEELTSANGNETKYYFEKLIP 217
>3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics,
slipchip,structural genomics, PSI-2, protein structure
initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO}
PDB: 3i3r_A* 3k2h_A* (A:1-227,A:472-511)
Length = 267
Score = 107 bits (268), Expect = 8e-25
Identities = 50/193 (25%), Positives = 76/193 (39%), Gaps = 31/193 (16%)
Query: 1 MTRPE-----IILIAAITRNNVIGSCGGMPWK-ISSDLKRFKSLTTGNP----------- 43
M+ + + A+ N VIG +PW I+ D + ++ TT P
Sbjct: 1 MSNSYEGCGDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQ 60
Query: 44 --VVMGYRTFQSI---GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGS 98
V+ G +T++SI L R N+I++R V V DL +
Sbjct: 61 NVVIFGRKTYESIPKASLPLKNRINVILSRT---VKEVPGCLVYEDLSTAIRDLRANVPH 117
Query: 99 KKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGE 156
KIFI+GG +Y + + L +Y+T + KE GD +FP I
Sbjct: 118 NKIFILGGSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIPDTFEITAISPTF----S 173
Query: 157 GDDYPTRFVIYDR 169
D FVIY+R
Sbjct: 174 TDFVSYDFVIYER 186
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic
drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo
sapiens} (A:)
Length = 186
Score = 104 bits (260), Expect = 7e-24
Identities = 41/183 (22%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 4 PEIILIAAITRNNVIGSCGGMPWK-ISSDLKRFKSLTTGNP-------VVMGYRTFQSI- 54
+ I A+++N IG G +PW + ++ + F+ +TT + V+MG +T+ SI
Sbjct: 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIP 61
Query: 55 --GRLLPGRTNIIIT--RDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110
R L GR N++++ + + L ++ + ++I+GG +Y
Sbjct: 62 EKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVY 121
Query: 111 AQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITS--AGEGDDYPTRFVI 166
+ ++ L++T I ++ E D FFP ID +K + E +F +
Sbjct: 122 KEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEV 181
Query: 167 YDR 169
Y++
Sbjct: 182 YEK 184
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium
vivax, pyrimethamine, malaria, drug resistance,
oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax}
PDB: 2blb_A* 2blc_A* 2bla_A* (A:)
Length = 238
Score = 101 bits (251), Expect = 8e-23
Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 16/180 (8%)
Query: 1 MTRPEIILIAAITRNNVIGSCGG-----MPWKISSDLKRFKSLTTGNPVVMGYRTFQSI- 54
R + + + N VVMG +++SI
Sbjct: 63 YVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNADKLQNVVVMGRSSWESIP 122
Query: 55 --GRLLPGRTNIIITRDNTRRASVNPEAVL-ASSILDSLDLASKTGSKKIFIIGGGEIYA 111
+ LP R N+++++ T E V SI D L L K K FIIGG ++Y
Sbjct: 123 KQYKPLPNRINVVLSK--TLTKEDVKEKVFIIDSIDDLLLLLKKLKYYKCFIIGGAQVYR 180
Query: 112 QTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+ +S L +Y T I DVFFP D + ++ + F++Y +
Sbjct: 181 ECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEFRVTSVSEV---YNSKGTTLDFLVYSK 237
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal
target; HET: NDP GW3; 1.60A {Candida albicans} (A:)
Length = 192
Score = 100 bits (249), Expect = 1e-22
Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 29/194 (14%)
Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQS 53
+ I++AA+ IG G MPW++ +++ FK +TT N V+MG +T++S
Sbjct: 2 LKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWES 61
Query: 54 I---GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110
I R LP R NII++R + + ++ +S ++S L + +++FIIGG EIY
Sbjct: 62 IPQKFRPLPDRLNIILSRS--YENEIIDDNIIHASSIESS-LNLVSDVERVFIIGGAEIY 118
Query: 111 AQTIS--LAHTLYITHIE----KEIEGDVFFPSIDSNIWKKQEKEIITS---------AG 155
+ I+ L L IT IE + IE D F + W KQ K +
Sbjct: 119 NELINNSLVSHLLITEIEHPSPESIEMDTFLKFPLES-WTKQPKSELQKFVGDTVLEDDI 177
Query: 156 EGDDYPTRFVIYDR 169
+ D+ + ++ R
Sbjct: 178 KEGDFTYNYTLWTR 191
>3dl5_A Dihydrofolate reductase, DHFR; enzyme active site mutant,
enzyme-ligand complex, , oxidoreductase; HET: UMP CB3
DHF NDP; 2.74A {Cryptosporidium hominis} PDB: 3dl6_A*
1qzf_A* 1sej_A* 2oip_A* (A:1-236,A:482-521)
Length = 276
Score = 98.3 bits (244), Expect = 5e-22
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 16/181 (8%)
Query: 1 MTRPEIILIAAIT-RNNVIGSCGGMPWKISSDLKRFKSLTTG-------NPVVMGYRTFQ 52
M+ + ++ A + ++ IG G +PW IS DLK F +T N ++MG +T+
Sbjct: 1 MSEKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWD 60
Query: 53 SI-GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYA 111
SI R L R ++I+ + + V + +L + + IF+ GG IY
Sbjct: 61 SIGRRPLKNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYR 120
Query: 112 QTIS--LAHTLYITHIEKEI-EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYD 168
+ +Y+T + E E D +FP I + + F+I++
Sbjct: 121 DALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTF----CTKNISYDFMIFE 176
Query: 169 R 169
+
Sbjct: 177 K 177
>2fzi_A Dihydrofolate reductase; trimethoprim derivatives, ring
stacking interactions, oxidoreductase; HET: NAP DH3;
1.60A {Pneumocystis carinii} (A:)
Length = 206
Score = 95.7 bits (237), Expect = 3e-21
Identities = 49/204 (24%), Positives = 79/204 (38%), Gaps = 35/204 (17%)
Query: 1 MT-RPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKS----------LTTGNPVVMGYR 49
M + + LI A+T + IG +PWK+ ++ FK + N V+MG +
Sbjct: 1 MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRK 60
Query: 50 TFQSI---GRLLPGRTNIIITRDNTRRASVN-----PEAVLASSILDSLDLASKTGSKKI 101
T++SI R L GR N++ITR+ + + + S +I
Sbjct: 61 TWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRI 120
Query: 102 FIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSI-DSNIWKKQEKEIITS----- 153
F+IGG ++Y + + T I K+I DVFFP W K+ S
Sbjct: 121 FVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESW 180
Query: 154 --------AGEGDDYPTRFVIYDR 169
D + F ++ R
Sbjct: 181 VGTKVPHGKINEDGFDYEFEMWTR 204
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle,
oxidoreductase; 2.10A {Thermotoga maritima} (A:)
Length = 168
Score = 90.6 bits (224), Expect = 1e-19
Identities = 39/169 (23%), Positives = 70/169 (41%), Gaps = 8/169 (4%)
Query: 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-NPVVMGYRTFQSIGRLLPGRTN 63
++I + A+ + I S W D K F+ +TT VVMG TF+ IGR LP R N
Sbjct: 2 KVIFVLAMDVSGKIASSVE-SWSSFEDRKNFRKITTEIGNVVMGRITFEEIGRPLPERLN 60
Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTIS--LAHTLY 121
+++TR + ++ S D + G +++ +IGG ++ + + L L+
Sbjct: 61 VVLTR-RPKTSNNPSLVFFNGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELF 119
Query: 122 ITHIEKEI-EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169
+T +G FF + K + E ++ +
Sbjct: 120 VTVEPYVFGKGIPFFDEFEGYFPLKLLEM--RRLNERGTLFLKYSVEKS 166
>1hw4_A TS, thymidylate synthase; methyltransferase; HET: CME; 2.06A
{Homo sapiens} (A:1-315)
Length = 315
Score = 33.5 bits (76), Expect = 0.015
Identities = 4/48 (8%), Positives = 12/48 (25%), Gaps = 6/48 (12%)
Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFLSK 173
D P+ ++ ++ + + R R +
Sbjct: 3 HHHHHHDTDIPTTENLTFQGACRLVANCRD------VRCRRLLRNVMP 44
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino)uracil...; TM1828,
structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga
maritima} (A:155-360)
Length = 206
Score = 31.8 bits (71), Expect = 0.058
Identities = 23/203 (11%), Positives = 56/203 (27%), Gaps = 36/203 (17%)
Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRF--KSLTTGNPVVMGYRTFQSIGRLL 58
RP + L A T + I G I+ L+ + + V++G T L
Sbjct: 3 KKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEXRNIYSAVLVGAGTVLKDNPQL 62
Query: 59 PGR-------------------------------TNIIITRDNTRRASVNPEAVLASSIL 87
R + + +A+ S+
Sbjct: 63 TCRLKEGRNPVRVILDRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVE 122
Query: 88 DSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDV-FFPSIDSNIWKKQ 146
L + + + GG +++++ + A ++ + K + F S++
Sbjct: 123 SILRNLYERDIDSVLVEGGSKVFSEFLDHADVVFGFYSTKIFGKGLDVFSGYLSDVSVPP 182
Query: 147 EKEIITSAGEGDDYPTRFVIYDR 169
+ +++ +
Sbjct: 183 KFKVVNVEFSDSE--FLVEXRPC 203
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus} (A:159-268)
Length = 110
Score = 28.0 bits (62), Expect = 0.80
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 87 LDSLDLASKTGSKKIFIIGGG----EIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNI 142
+ + + + + IIG G EI + + +I + + I + +
Sbjct: 3 IFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTL 62
Query: 143 WKKQEKEIITSAG----EGDDYPTRFVIYD 168
+ I ++ + VIY
Sbjct: 63 LSILKLNIKFNSPVTEVKKIKDDEYEVIYS 92
>1ewn_A 3-methyl-adenine DNA glycosylase; DNA repair, AAG, ANPG,
MPG, hydrolase/DNA complex; HET: DNA EDA; 2.10A {Homo
sapiens} (A:)
Length = 219
Score = 27.9 bits (62), Expect = 0.85
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%)
Query: 151 ITSAGEGDDYPTRFVIYD-RFLSK 173
+ AGE P RF + ++S
Sbjct: 185 VGHAGEWARKPLRFYVRGSPWVSV 208
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.75A {Pyrococcus horikoshii OT3} (A:)
Length = 298
Score = 27.5 bits (61), Expect = 1.1
Identities = 22/107 (20%), Positives = 36/107 (33%), Gaps = 22/107 (20%)
Query: 77 NPEA--VLASSILDSLDLASKTGSKKIFIIG-GGEIYAQTIS---LAHTLYITHI----- 125
N A ++A +I+ LD K SK +G GG YA + L L HI
Sbjct: 186 NDRAGEIIAETIIYVLDNYEKGRSKFKVALGIGGGHYAPKQTKRALEGDLAFGHILPKYA 245
Query: 126 --------EKEIE---GDVFFPSIDSNIWKKQEKEIITSAGEGDDYP 161
K + V +D + + +++ S +
Sbjct: 246 QPVSRDVXIKALNRFGEKVEAIYVDWKGSRGETRQLAKSLAQELGLE 292
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase;
HET: TYB; 2.0A {Thermus thermophilus} (A:1-234)
Length = 234
Score = 26.3 bits (57), Expect = 2.7
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 43 PVVMGYRTFQSIGRLLPG----RTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGS 98
P Y + + G R N+++ R+ R +P+ +L LD G
Sbjct: 176 PFAQAYDSVAIRADVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLD-----GR 230
Query: 99 KK 100
+K
Sbjct: 231 EK 232
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} (A:122-242)
Length = 121
Score = 25.7 bits (56), Expect = 3.6
Identities = 9/66 (13%), Positives = 16/66 (24%), Gaps = 4/66 (6%)
Query: 91 DLASKTGSKKIFIIGGG----EIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQ 146
+ +IG G E + + I G + ++
Sbjct: 21 QKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEM 80
Query: 147 EKEIIT 152
E IT
Sbjct: 81 EANNIT 86
>6ldh_A M4 APO-lactate dehydrogenase;
oxidoreductase(CHOH(D)-NAD(A)); 2.00A {} (A:)
Length = 330
Score = 25.8 bits (55), Expect = 3.8
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 94 SKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEI 129
KI ++G G + + A ++ + + E+
Sbjct: 17 EPRSYNKITVVGVGAVGM---ACAISILMKDLADEV 49
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A
{Pseudomonas fluorescens} (A:1-242,A:371-406)
Length = 278
Score = 25.4 bits (54), Expect = 4.7
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 52 QSIGRLLPGRTNIIITRDN 70
R + IT D+
Sbjct: 223 SYFKRYHEQGAIVAITADH 241
>3etn_A Putative phosphosugar isomerase involved in capsule
formation; YP_209877.1, structural genomics; HET: MSE
CMK; 1.70A {Bacteroides fragilis nctc 9343} (A:)
Length = 220
Score = 25.2 bits (54), Expect = 5.7
Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 2/91 (2%)
Query: 63 NIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYI 122
++ +A ++ + K+ G G+ ++A T
Sbjct: 26 ELLQKEAQAVLNIPVTDAY--EKAVELIVEQIHRKKGKLVTSGXGKAGQIAXNIATTFCS 83
Query: 123 THIEKEIEGDVFFPSIDSNIWKKQEKEIITS 153
T I D I ++ + ++ S
Sbjct: 84 TGIPSVFLHPSEAQHGDLGILQENDLLLLIS 114
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide
formyl transferase; purine ribonucleotide biosynthesis,
PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB:
2czg_A* (A:1-108)
Length = 108
Score = 24.8 bits (54), Expect = 6.5
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 83 ASSILDSLDLASKTGSKKIFIIGGGEI 109
+ D L A+ ++KI ++G GE+
Sbjct: 4 MIKLRDELGTATTDSAQKILLLGSGEL 30
>2hl0_A Threonyl-tRNA synthetase; translation, editing,
aminoacyl-tRNA synthetase, enzyme mechanism,
enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus
abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 2hl1_A* (A:)
Length = 143
Score = 24.7 bits (54), Expect = 6.5
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 77 NPEAVLASSILDSLDLASKTGSKKIFI 103
NPE V +I + +A + ++ +F+
Sbjct: 52 NPEEVSLKAIEEISKVAEQVKAENVFV 78
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenase; HET: NAD; 2.20A {Weissella confusa} (A:)
Length = 309
Score = 24.6 bits (52), Expect = 7.6
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Query: 98 SKKIFIIGGGEIYAQTISLAHTLYITHIEKEI 129
++KI IIG G + A ++AH L + +
Sbjct: 1 ARKIGIIGLGNVGA---AVAHGLIAQGVADDY 29
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha,
deaminase domain and reductase domain, hydrolase,
oxidoreductase; 2.41A {Bacillus subtilis} (A:147-373)
Length = 227
Score = 24.5 bits (52), Expect = 7.7
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKR 34
P + L AA + + I + G I+S+ R
Sbjct: 9 TGLPYVTLKAAASLDGKIATSTGDSKWITSEAAR 42
>2gd9_A Hypothetical protein YYAP; 2636623, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI; 2.30A {Bacillus subtilis}
(A:)
Length = 189
Score = 24.3 bits (52), Expect = 8.4
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 1 MTRPEIILIAAITRNNVI-GSCGGMPWKISSDLKRFKSLTTGNP-VVMGYRTFQSIGRLL 58
+ + IIL A+T + I G G + W I F ++ G ++F G+ +
Sbjct: 6 LKQRRIILDLAVTLDGFIEGKNGEVDWCIXDPDXGFTDFLNQIDTILYGRKSFDLWGQYI 65
Query: 59 PGR 61
P
Sbjct: 66 PKN 68
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis,
NAD, oxidoreductase, phosphoprotein; 1.80A
{Staphylococcus aureus} PDB: 3d4p_A* (A:)
Length = 317
Score = 24.6 bits (52), Expect = 8.4
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 94 SKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEI 129
+K K+ +IG G + + S A +L I E+
Sbjct: 2 NKFKGNKVVLIGNGAVGS---SYAFSLVNQSIVDEL 34
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin-- NAD(+)
reductase; FAD binding protein, NADH binding protein,
aromatic hydrocarbons catabolism; HET: FAD; 1.80A
{Pseudomonas putida} (A:118-237)
Length = 120
Score = 24.3 bits (52), Expect = 9.8
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 78 PEAVLASSILDSLDL-ASKTGSKKIFIIGGGEI---YAQTIS-LAHTLYITHIEKEIEGD 132
P V + D L S T + ++ I+GGG I A T L ++ I E+
Sbjct: 5 PGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVR 64
Query: 133 VFFPSIDSNIWKKQEKEIIT 152
V I + + + +
Sbjct: 65 VLGRRIGAWLRGLLTELGVQ 84
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.137 0.396
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,310,833
Number of extensions: 54967
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 50
Length of query: 176
Length of database: 4,956,049
Length adjustment: 83
Effective length of query: 93
Effective length of database: 2,150,234
Effective search space: 199971762
Effective search space used: 199971762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)