RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus str. psy62] (176 letters) >3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* Length = 521 Score = 182 bits (463), Expect = 4e-47 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 1 MTRPEI-ILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------NPVVMGYRTFQ 52 M+ + I++AA ++ IG G +PW IS DLK F +T N ++MG +T+ Sbjct: 1 MSEKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWD 60 Query: 53 SIG-RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLD-LASKTGSKKIFIIGGGEIY 110 SIG R L R ++I+ + + +P V+ ++ DS++ L + + IF+ GG IY Sbjct: 61 SIGRRPLKNRIIVVISS-SLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIY 119 Query: 111 AQTIS--LAHTLYITHIEKE-IEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIY 167 + +Y+T + E IE D +FP I + + + F+I+ Sbjct: 120 RDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCT----KNISYDFMIF 175 Query: 168 DR 169 ++ Sbjct: 176 EK 177 >3dl5_A Dihydrofolate reductase, DHFR; enzyme active site mutant, enzyme-ligand complex, , oxidoreductase; HET: UMP CB3 DHF NDP; 2.74A {Cryptosporidium hominis} PDB: 3dl6_A* 1qzf_A* 1sej_A* 2oip_A* Length = 521 Score = 171 bits (434), Expect = 9e-44 Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 18/182 (9%) Query: 1 MTRPEI-ILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------NPVVMGYRTFQ 52 M+ + I++AA ++ IG G +PW IS DLK F +T N ++MG +T+ Sbjct: 1 MSEKNVSIVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWD 60 Query: 53 SIG-RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLD-LASKTGSKKIFIIGGGEIY 110 SIG R L R ++I+ + + +P V+ ++ DS++ L + + IF+ GG IY Sbjct: 61 SIGRRPLKNRIIVVISS-SLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIY 119 Query: 111 AQTIS--LAHTLYITHIEKE-IEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIY 167 + +Y+T + E IE D +FP I + + + F+I+ Sbjct: 120 RDALKDNFVDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCT----KNISYDFMIF 175 Query: 168 DR 169 ++ Sbjct: 176 EK 177 >3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* Length = 515 Score = 166 bits (422), Expect = 2e-42 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 31/193 (16%) Query: 4 PEIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNP-------------VVMGYR 49 ++ + A+ N VIG +PW I+ D + ++ TT P V+ G + Sbjct: 13 GDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRK 72 Query: 50 TFQSIGRL---LPGRTNIIITRDNTRRASVNPEAVLASSILDSL-DLASKTGSKKIFIIG 105 T++SI + L R N+I++R P ++ + ++ DL + KIFI+G Sbjct: 73 TYESIPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLRANVPHNKIFILG 128 Query: 106 GGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTR 163 G +Y + + L +Y+T + KE GD +FP I D Sbjct: 129 GSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIPDTFEITAISP----TFSTDFVSYD 184 Query: 164 FVIYDRFLSKNCS 176 FVIY+R K+C Sbjct: 185 FVIYER---KDCK 194 >3jwk_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5WB; 2.08A {Bacillus anthracis} PDB: 3jw5_A* 3jwf_A* 3jwc_A* 3jvx_A* 3jwm_A* 3jw3_A* 3e0b_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A* Length = 168 Score = 165 bits (419), Expect = 5e-42 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 6/165 (3%) Query: 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNI 64 + + A+ N VIG +PW++ S+L+ K T G+P++MG + +++IGR LPGR NI Sbjct: 8 RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNI 67 Query: 65 IITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITH 124 I+TR+ +A S+ + +L ++IFI GG +I+ + LYIT Sbjct: 68 IVTRNEGYHV---EGCEVAHSVEEVFELCKN--EEEIFIFGGAQIFDLFLPYVDKLYITK 122 Query: 125 IEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 I EGD FFP +D WK+ E E + Y + +Y++ Sbjct: 123 IHHAFEGDTFFPEMDMTNWKEVFVEKGL-TDEKNPYTYYYHVYEK 166 >3e0b_A Dihydrofolate reductase; oxidoreductase; HET: NAP N22; 2.25A {Bacillus anthracis} PDB: 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A* Length = 166 Score = 163 bits (413), Expect = 2e-41 Identities = 55/165 (33%), Positives = 87/165 (52%), Gaps = 6/165 (3%) Query: 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNI 64 + + A+ N VIG +PW++ S+L+ K T G+P++MG + +++IGR LPGR NI Sbjct: 6 RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMGHPLIMGRKNYEAIGRPLPGRRNI 65 Query: 65 IITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITH 124 I+TR+ +A S+ + +L ++IFI GG +IY + LYIT Sbjct: 66 IVTRNEG---YHVEGCEVAHSVEEVFELCKN--EEEIFIFGGAQIYDLFLPYVDKLYITK 120 Query: 125 IEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 I EGD FFP +D WK+ E E + Y + +Y++ Sbjct: 121 IHHAFEGDTFFPEMDMTNWKEVFVEKGL-TDEKNPYTYYYHVYEK 164 >3jsu_A Dihydrofolate reductase-thymidylate synthase; rossmann fold, oxidoreductase, transferase; HET: KA5 NDP UMP; 2.70A {Plasmodium falciparum} Length = 608 Score = 162 bits (411), Expect = 4e-41 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 45/196 (22%) Query: 15 NNVIGSCGGMPWK-ISSDLKRFKSLTT--------------------------------- 40 +G+ G +PWK IS D+K F+++TT Sbjct: 37 FRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSK 96 Query: 41 --GNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASK 95 N VVMG ++SI + L R N+I++R ++ + + + + + D + L K Sbjct: 97 KLQNVVVMGRTNWESIPKKFKPLSNRINVILSR-TLKKEDFDEDVYIINKVEDLIVLLGK 155 Query: 96 TGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITS 153 K FI+GG +Y + + L +Y T I E DVFFP I+ N ++ + Sbjct: 156 LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSDVY- 214 Query: 154 AGEGDDYPTRFVIYDR 169 ++ F+IY + Sbjct: 215 --TSNNTTLDFIIYKK 228 >3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A Length = 162 Score = 160 bits (407), Expect = 1e-40 Identities = 63/164 (38%), Positives = 95/164 (57%), Gaps = 6/164 (3%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 + +IAA+ N VIG MPW + ++L+ FK T G P+VMG TF+SIGR LPGR NI+ Sbjct: 3 VSMIAALANNRVIGLDNKMPWHLPAELQLFKRATLGKPIVMGRNTFESIGRPLPGRLNIV 62 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 ++R PE V + L+ +A+ +++ IIGG IY Q ++ A LY+THI Sbjct: 63 LSRQ----TDYQPEGVTVVATLEDAVVAAG-DVEELMIIGGATIYNQCLAAADRLYLTHI 117 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 E EGD +FP + W++ E E +A + + + RF + +R Sbjct: 118 ELTTEGDTWFPDYEQYNWQEIEHESY-AADDKNPHNYRFSLLER 160 >3kjr_A Dihydrofolate reductase/thymidylate synthase; microfluidics, slipchip,structural genomics, PSI-2, protein structure initiative; HET: NAP NHE; 1.95A {Babesia bovis T2BO} PDB: 3i3r_A* 3k2h_A* Length = 511 Score = 157 bits (399), Expect = 1e-39 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 31/193 (16%) Query: 4 PEIILIAAITRNNVIGSCGGMPWK-ISSDLKRFKSLTTGNP-------------VVMGYR 49 ++ + A+ N VIG +PW I+ D + ++ TT P V+ G + Sbjct: 9 GDLTIFVAVALNKVIGHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRK 68 Query: 50 TFQSIGRL---LPGRTNIIITRDNTRRASVNPEAVLASSILDSL-DLASKTGSKKIFIIG 105 T++SI + L R N+I++R P ++ + ++ DL + KIFI+G Sbjct: 69 TYESIPKASLPLKNRINVILSRT----VKEVPGCLVYEDLSTAIRDLRANVPHNKIFILG 124 Query: 106 GGEIYAQTISL--AHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTR 163 G +Y + + +Y+T + KE GD +FP I D Sbjct: 125 GSFLYKEVLDNGLCDKIYLTRLNKEYPGDTYFPDIPDTFEITAISP----TFSTDFVSYD 180 Query: 164 FVIYDRFLSKNCS 176 FVIY+R K+C Sbjct: 181 FVIYER---KDCK 190 >3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae} Length = 190 Score = 157 bits (398), Expect = 1e-39 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 8/171 (4%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQS-IGRLLP 59 MT+ +I+ I A VIG +PW + ++L+ FK T + ++MG TF RLLP Sbjct: 21 MTK-KIVAIWAQDEEGVIGKDNRLPWYLPAELQHFKETTLNHAILMGRVTFDGMGRRLLP 79 Query: 60 GRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHT 119 R +I+TR+ + V + S+ K ++I+GG +I+ Sbjct: 80 KRETLILTRNP----EEKIDGVATFHDVQSVLDWYSAQEKNLYIVGGKQIFQAFEPYLDE 135 Query: 120 LYITHIEKEIEGDVFFPS-IDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + +THI +EGD +FP+ D ++++ + T E + Y R Sbjct: 136 VIVTHIHARVEGDTYFPAEFDLSLFETVSSKFYT-KDEKNPYDFTIQYRKR 185 >3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* Length = 521 Score = 152 bits (386), Expect = 3e-38 Identities = 40/186 (21%), Positives = 71/186 (38%), Gaps = 38/186 (20%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------------NPVVMG 47 + L+ A+ + IG +PW + D+K F+ LTT N VVMG Sbjct: 18 LALRAFSLVVAVDEHGGIGDGRSIPWNVPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMG 77 Query: 48 YRTFQSIG---RLLPGRTNIIITRDNTRRASVNPE-------------AVLASSILDSLD 91 +T+ SI R LPGR N++++ T + ++ + + +L Sbjct: 78 RKTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALR 137 Query: 92 LASK----TGSKKIFIIGGGEIYAQTIS-----LAHTLYITHIEKEIEGDVFFPSIDSNI 142 L + + ++ IGGG +YA+ + L +Y T I F + + Sbjct: 138 LLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYRTTIRASESSCSVFFRVPESG 197 Query: 143 WKKQEK 148 + Sbjct: 198 TEAAAG 203 >1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus} Length = 164 Score = 147 bits (372), Expect = 1e-36 Identities = 53/164 (32%), Positives = 84/164 (51%), Gaps = 5/164 (3%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 I I A+ N VIG +PW + +DL FK +T G+ +VMG +TF++IGR LPGR N++ Sbjct: 2 ISHIVAMDENRVIGKDNRLPWHLPADLAYFKRVTMGHAIVMGRKTFEAIGRPLPGRDNVV 61 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 +T + + R + + + ++FIIGG E++ T+ + LY+T I Sbjct: 62 VTGNRSFRPEGCLVLHSLEEVKQ----WIASRADEVFIIGGAELFRATMPIVDRLYVTKI 117 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 GD F+P I + W+ E + Y F+IY+R Sbjct: 118 FASFPGDTFYPPISDDEWEIVSYTPG-GKDEKNPYEHAFIIYER 160 >2h2q_A Bifunctional dihydrofolate reductase-thymidylate synthase; bifunctional enzyme in complex with NADP and DUMP, oxidoreductase, transferase; HET: NAP DU; 2.40A {Trypanosoma cruzi} PDB: 3cl9_A* 3clb_A* 3hbb_A* Length = 521 Score = 146 bits (370), Expect = 2e-36 Identities = 39/186 (20%), Positives = 70/186 (37%), Gaps = 38/186 (20%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------------NPVVMG 47 + L+ A+ IG +PW + D+K F+ +TT N VVMG Sbjct: 18 LALRAFSLVVAVDERGGIGDGRSIPWNVPEDMKFFRDVTTKLRGKNVKPSPAKRNAVVMG 77 Query: 48 YRTFQSIG---RLLPGRTNIIITRDNTRRASV-------------NPEAVLASSILDSLD 91 +T+ SI R LPGR N++++ T + + + + + +L Sbjct: 78 RKTWDSIPPKFRPLPGRLNVVLSSTLTTQHLLDGLPDEEKRNLHADSIVAVNGGLEQALQ 137 Query: 92 LASK----TGSKKIFIIGGGEIYAQ-----TISLAHTLYITHIEKEIEGDVFFPSIDSNI 142 L + + ++ IGGG +YA+ + L +Y T I F + + Sbjct: 138 LLASPNYTPSIETVYCIGGGSVYAEALRPPCVHLLQAIYRTTIRASESSCSVFFRVPESG 197 Query: 143 WKKQEK 148 + Sbjct: 198 TEAAAG 203 >3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide binding domain, antibiotic resistance; HET: MTX NAP; 1.50A {Escherichia coli K12} PDB: 1ddr_A* 1dds_A* 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* 1rf7_A* ... Length = 159 Score = 146 bits (368), Expect = 4e-36 Identities = 60/164 (36%), Positives = 85/164 (51%), Gaps = 7/164 (4%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 I LIAA+ + VIG MPW + +DL FK T PV+MG T++SIGR LPGR NII Sbjct: 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNII 61 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 ++ V + +I A+ +I +IGGG +Y Q + A LY+THI Sbjct: 62 LSSQPGTDDRVTWVKSVDEAI------AACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHI 115 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + E+EGD FP + + W+ E A + + F I +R Sbjct: 116 DAEVEGDTHFPDYEPDDWESVFSEFHD-ADAQNSHSYCFEILER 158 >2w9h_A DHFR, dihydrofolate reductase; NADP, trimethoprim, oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3fyw_X* 3fyv_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3fqc_A* 3fqz_A* 3f0u_X* 3fqf_A* 3fqo_A* 3fqv_A* 2w9s_A* 2w9t_A Length = 159 Score = 142 bits (360), Expect = 3e-35 Identities = 48/164 (29%), Positives = 76/164 (46%), Gaps = 9/164 (5%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 + ++ A VIG +PW + +DLK K L+TG+ +VMG +TF+SIG+ LP R N++ Sbjct: 3 LSILVAHDLQRVIGFENQLPWHLPNDLKHVKKLSTGHTLVMGRKTFESIGKPLPNRRNVV 62 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 +T D + S++ + +FI GG ++ + I +YIT I Sbjct: 63 LTSDTSFNVEGVDVI-------HSIEDIYQL-PGHVFIFGGQTLFEEMIDKVDDMYITVI 114 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 E + GD FFP W+ E + P F+ R Sbjct: 115 EGKFRGDTFFPPYTFEDWEVASSV-EGKLDEKNTIPHTFLHLIR 157 >3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* Length = 227 Score = 142 bits (359), Expect = 4e-35 Identities = 48/166 (28%), Positives = 89/166 (53%), Gaps = 19/166 (11%) Query: 1 MTR-PEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQ 52 M++ P + ++AA+ IG G +PW+++ ++K F+ +TT N V+MG +T++ Sbjct: 1 MSKVPVVGIVAALLPEMGIGFQGNLPWRLAKEMKYFREVTTLTNDNSKQNVVIMGRKTWE 60 Query: 53 SIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDS------LDLASKTGSKKIFI 103 SI R LP R N++++R + + S+ L + LA++ ++I+I Sbjct: 61 SIPQKFRPLPKRINVVVSRSFDGELRKVEDGIYHSNSLRNCLTALQSSLANENKIERIYI 120 Query: 104 IGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKE 149 IGGGEIY Q++ LA IT I + P +D+ + K++ ++ Sbjct: 121 IGGGEIYRQSMDLADHWLITKIMP--LPETTIPQMDTFLQKQELEQ 164 >2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A* Length = 167 Score = 140 bits (353), Expect = 2e-34 Identities = 52/177 (29%), Positives = 84/177 (47%), Gaps = 19/177 (10%) Query: 1 MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG---RL 57 MTR E+ L+ A + + VIG G +PW + DL RFK +T G+ V+MG RT++S+ R Sbjct: 1 MTRAEVGLVWAQSTSGVIGRGGDIPWSVPEDLTRFKEVTMGHTVIMGRRTWESLPAKVRP 60 Query: 58 LPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASK--TGSKKIFIIGGGEIYAQTIS 115 LPGR N++++R A + SL+ A ++IGG +IY + Sbjct: 61 LPGRRNVVVSRRPDFVAEGAR-------VAGSLEAALAYAGSDPAPWVIGGAQIYLLALP 113 Query: 116 LAHTLYITHIEKEI---EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 A +T IE ++ + D P++D + + + + RF Y R Sbjct: 114 HATRCEVTEIEIDLRRDDDDALAPALDDSWVGETGEWLA----SRSGLRYRFHSYRR 166 >1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3fs6_A* 1mvs_A* ... Length = 186 Score = 139 bits (352), Expect = 2e-34 Identities = 43/183 (23%), Positives = 86/183 (46%), Gaps = 17/183 (9%) Query: 4 PEIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTG-------NPVVMGYRTFQSI- 54 + I A+++N IG G +PW + ++ + F+ +TT N V+MG +T+ SI Sbjct: 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIP 61 Query: 55 --GRLLPGRTNIIITR--DNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110 R L GR N++++R + + L ++ + ++I+GG +Y Sbjct: 62 EKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVY 121 Query: 111 AQTISLA--HTLYITHIEKEIEGDVFFPSIDSNIWK--KQEKEIITSAGEGDDYPTRFVI 166 + ++ L++T I ++ E D FFP ID +K + +++ E +F + Sbjct: 122 KEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEV 181 Query: 167 YDR 169 Y++ Sbjct: 182 YEK 184 >3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* Length = 162 Score = 132 bits (333), Expect = 4e-32 Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 6/163 (3%) Query: 8 LIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI-GRLLPGRTNIII 66 + A RN +IG G +PW + DL F++ T G +V+G RT++S R LP RTN+++ Sbjct: 3 FLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVL 62 Query: 67 TRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIE 126 T +A AV+ + A + +++ I GG +I+ TL +T + Sbjct: 63 THQEDYQA---QGAVVVHDVAAVFAYAKQHLDQELVIAGGAQIFTAFKDDVDTLLVTRLA 119 Query: 127 KEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 EGD ++ + + K + + ++ + Sbjct: 120 GSFEGDTKMIPLNWDDFTKVSSRTV--EDTNPALTHTYEVWQK 160 >1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A Length = 162 Score = 132 bits (332), Expect = 6e-32 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 11/166 (6%) Query: 5 EIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTN 63 E++ +AA+ N VIG G +PW I +D K+++S +PVV+G TF+S+ LPG Sbjct: 2 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIADDPVVLGRTTFESMRDDLPGSAQ 61 Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYIT 123 I+++R A A+S+ +++D+A+ ++ ++IGG IYA + ++ Sbjct: 62 IVMSRSERS--FSVDTAHRAASVEEAVDIAASLDAETAYVIGGAAIYALFQPHLDRMVLS 119 Query: 124 HIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + E EGD ++P D+ W+ + D + R Sbjct: 120 RVPGEYEGDTYYPEWDAAEWELDAET--------DHEGFTLQEWVR 157 >1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A* Length = 280 Score = 130 bits (327), Expect = 2e-31 Identities = 49/201 (24%), Positives = 84/201 (41%), Gaps = 45/201 (22%) Query: 15 NNVIGSCGGMPWK-ISSDLKRFKSLTT--------------------------------- 40 +G+ G +PWK IS D+K F+++TT Sbjct: 37 FRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSK 96 Query: 41 --GNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASK 95 N VVMG ++SI + L R N+I++R ++ + + + + + D + L K Sbjct: 97 KLQNVVVMGRTNWESIPKKFKPLSNRINVILSR-TLKKEDFDEDVYIINKVEDLIVLLGK 155 Query: 96 TGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITS 153 K FI+GG +Y + + L +Y T I E DVFFP I+ N ++ + Sbjct: 156 LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSDVY- 214 Query: 154 AGEGDDYPTRFVIYDRFLSKN 174 ++ F+IY + +K Sbjct: 215 --TSNNTTLDFIIYKKTNNKM 233 >1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1 Length = 193 Score = 129 bits (326), Expect = 2e-31 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 29/186 (15%) Query: 7 ILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 G G+PW ++ DL+ FK+ T G ++MG +TFQS+ LLPGR++I+ Sbjct: 11 TKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTEGTIMIMGAKTFQSLPTLLPGRSHIV 70 Query: 66 ITRDNTRRA------------------SVNPEAVLASSILDSLDLASKTGSKKIFIIGGG 107 + + + S ++ + K+ +IGG Sbjct: 71 VCDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSVIGGP 130 Query: 108 EIYAQTISLAHTLYITHIEKE------IEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYP 161 + + A + ++ I K ++ D F D + + E E Sbjct: 131 ALLYAALPYADEVVVSRIVKRHRVNSTVQLDASFL-DDISKREMVETHWYK-IDEVTTL- 187 Query: 162 TRFVIY 167 +Y Sbjct: 188 -TESVY 192 >1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold, nicotinamide adenine dinucleotide; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A* Length = 159 Score = 129 bits (325), Expect = 3e-31 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG---RLLPGRT 62 + LI A + VIG G +PW++ D F+ +T G+ +VMG RT+ S+ R LPGR Sbjct: 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRR 61 Query: 63 NIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYI 122 N++++R AS ++ SL+ A + + ++IGGG++YA + A + Sbjct: 62 NVVLSRQADFMASGAE-------VVGSLEEALTS--PETWVIGGGQVYALALPYATRCEV 112 Query: 123 THIE---KEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 T ++ GD P +D W+ + E S R Y R Sbjct: 113 TEVDIGLPREAGDALAPVLDET-WRGETGEWRFSR---SGLRYRLYSYHR 158 >2fzi_A Dihydrofolate reductase; trimethoprim derivatives, ring stacking interactions, oxidoreductase; HET: NAP DH3; 1.60A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 4cd2_A* 1vj3_A* Length = 206 Score = 123 bits (310), Expect = 2e-29 Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 34/201 (16%) Query: 3 RPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNP----------VVMGYRTFQ 52 + + LI A+T + IG +PWK+ ++ FK +T+ P V+MG +T++ Sbjct: 4 QKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWE 63 Query: 53 SI---GRLLPGRTNIIITRDNTRRA-----SVNPEAVLASSILDSLDLASKTGSKKIFII 104 SI R L GR N++ITR+ + S + + S +IF+I Sbjct: 64 SIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVI 123 Query: 105 GGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPS-IDSNIWKKQEKE------------ 149 GG ++Y + + T I K+I DVFFP W K+ Sbjct: 124 GGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGT 183 Query: 150 -IITSAGEGDDYPTRFVIYDR 169 + D + F ++ R Sbjct: 184 KVPHGKINEDGFDYEFEMWTR 204 >1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* Length = 192 Score = 122 bits (306), Expect = 5e-29 Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 30/195 (15%) Query: 1 MTRPEI-ILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQ 52 M +P + I++AA+ IG G MPW++ +++ FK +TT N V+MG +T++ Sbjct: 1 MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWE 60 Query: 53 SIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEI 109 SI R LP R NII++R + ++ + ASSI SL+L S +++FIIGG EI Sbjct: 61 SIPQKFRPLPDRLNIILSR-SYENEIIDDNIIHASSIESSLNLVSDV--ERVFIIGGAEI 117 Query: 110 YAQTIS--LAHTLYITHIE----KEIEGDVFFPSIDSNIWKKQEKE---------IITSA 154 Y + I+ L L IT IE + IE D F W KQ K ++ Sbjct: 118 YNELINNSLVSHLLITEIEHPSPESIEMDTFLK-FPLESWTKQPKSELQKFVGDTVLEDD 176 Query: 155 GEGDDYPTRFVIYDR 169 + D+ + ++ R Sbjct: 177 IKEGDFTYNYTLWTR 191 >2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A* Length = 238 Score = 115 bits (288), Expect = 7e-27 Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 55/206 (26%) Query: 15 NNVIGSCGGMPWKI-SSDLKRFKSLTT--------------------------------- 40 +G+ G +PWK S D+K F S+TT Sbjct: 36 FRGLGNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGG 95 Query: 41 ------------GNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAVLASS 85 N VVMG +++SI + LP R N+++++ + V + + S Sbjct: 96 DNTHGGDNADKLQNVVVMGRSSWESIPKQYKPLPNRINVVLSK-TLTKEDVKEKVFIIDS 154 Query: 86 ILDSLDLASKTGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIW 143 I D K K FIIGG ++Y + +S L +Y T I DVFFP D + + Sbjct: 155 IDDXXXXXKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYPCDVFFPEFDESEF 214 Query: 144 KKQEKEIITSAGEGDDYPTRFVIYDR 169 + + +G F++Y + Sbjct: 215 RVTSVSEVY-NSKGTTL--DFLVYSK 237 >1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A* Length = 168 Score = 90.3 bits (223), Expect = 2e-19 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 8/166 (4%) Query: 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-NPVVMGYRTFQSIGRLLPGRTN 63 ++I + A+ + I S W D K F+ +TT VVMG TF+ IGR LP R N Sbjct: 2 KVIFVLAMDVSGKIAS-SVESWSSFEDRKNFRKITTEIGNVVMGRITFEEIGRPLPERLN 60 Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISL--AHTLY 121 +++TR + + S D + G +++ +IGG ++ + + L+ Sbjct: 61 VVLTRRPKTSNNPSLV-FFNGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELF 119 Query: 122 ITHIEKEI-EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVI 166 +T +G FF + K + E ++ + Sbjct: 120 VTVEPYVFGKGIPFFDEFEGYFPLKLLEM--RRLNERGTLFLKYSV 163 >3jtw_A Dihydrofolate reductase; YP_805003.1, structural genomics, joint center for structural genomics, JCSG; 1.90A {Pediococcus pentosaceus atcc 25745} Length = 178 Score = 37.1 bits (85), Expect = 0.002 Identities = 29/157 (18%), Positives = 58/157 (36%), Gaps = 16/157 (10%) Query: 1 MTRPEIILIAAITRNNVI-GSCGGMPWKIS------SDLKRFKSLTTGNPVVMGYRTFQS 53 M R ++IL A++ +N I G + W SD K + + V+MG T++ Sbjct: 2 MAR-KVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQ 60 Query: 54 IGRLLPGR-----TNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGE 108 + + L + + S ++ + K K ++I+GG + Sbjct: 61 VTQKLSPEKYVYADRQTYIVTSHLGEDTDKIKYWKQSPVELVKRIQKEKGKDVWIVGGAK 120 Query: 109 IYAQTIS--LAHTLYITHIEKEI-EGDVFFPSIDSNI 142 I + L T +T + + G F ++ + Sbjct: 121 IIDPLVQANLIDTYILTTVPIFLGSGIRLFDRLEEQV 157 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 32.9 bits (74), Expect = 0.042 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Query: 1 MTRPEIILIAAITRNNVIGSCG-GMPWKISSDLKRFKSLTTGNP----VVMGYRTFQSIG 55 M+RP A TRN + + G G+ + +DL +L G P V M IG Sbjct: 1166 MSRP-----ATTTRNGFMEAQGAGIQIIMQADL----ALKMGVPIYGIVAMAATATDKIG 1216 Query: 56 RLLPGRTNIIITRDNTRRASV 76 R +P I+T +SV Sbjct: 1217 RSVPAPGKGILTTAREHHSSV 1237 >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* Length = 433 Score = 30.4 bits (67), Expect = 0.22 Identities = 10/37 (27%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 81 VLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLA 117 V+ + D L A+ ++KI ++G GE+ + I++ Sbjct: 2 VVMIKLRDELGTATTDSAQKILLLGSGEL-GKEIAIE 37 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 29.5 bits (66), Expect = 0.37 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%) Query: 58 LPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGG----EIYAQT 113 L +I R + P ++S L A G+ ++ I GG + Y + Sbjct: 116 LVKTKELIKNYITARIMAKRPFDKKSNSAL--FR-AVGEGNAQLVAIFGGQGNTDDYFEE 172 Query: 114 ISLAHTLYITHIE 126 + + Y + Sbjct: 173 LRDLYQTYHVLVG 185 Score = 28.0 bits (62), Expect = 1.1 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 44/137 (32%) Query: 43 PV---VMG------YR-TFQSIGRLLPG--RTNI---------IITRDNTRRASVNPEAV 81 P+ ++G Y T + +G PG R+ + ++T A A+ Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLG-FTPGELRSYLKGATGHSQGLVT------AV----AI 283 Query: 82 LASSILDSLDLASKTGSKKIFIIG--GGEIYAQTISLAHTLYITHIEKEIEGDVFFP--- 136 + +S ++ + +F IG E Y T SL ++ +E +E + P Sbjct: 284 AETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT-SLPPSI----LEDSLENNEGVPSPM 338 Query: 137 -SIDSNIWKKQEKEIIT 152 SI SN+ ++Q ++ + Sbjct: 339 LSI-SNLTQEQVQDYVN 354 >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodanese, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 Score = 28.8 bits (63), Expect = 0.68 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 4/49 (8%) Query: 84 SSILDSLDLASKTGSKKIFIIGGG----EIYAQTISLAHTLYITHIEKE 128 L D + GS+KI ++GG + A+ L+ I +E+ Sbjct: 22 GRTLYDDDDKDRWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERG 70 >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Length = 144 Score = 28.4 bits (63), Expect = 1.0 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Query: 77 NPEAVLASSILDSLDLASKTGSKKIFIIGGGEI 109 N V SI D+ K G KI ++G G + Sbjct: 2 NAGKVSIPSI--VYDIVRKNGGNKILLVGNGML 32 >2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Bacillus subtilis} Length = 189 Score = 27.9 bits (61), Expect = 1.3 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 19/161 (11%) Query: 1 MTRPEIILIAAITRNNVI-GSCGGMPWKISSDLKRFKSLTTGNPVVM-GYRTFQSIGRLL 58 + + IIL A+T + I G G + W I F ++ G ++F G+ + Sbjct: 6 LKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLNQIDTILYGRKSFDLWGQYI 65 Query: 59 PGRTNIIITRDNTRRASVNPEAVLASS--------------ILDSLDLASKTGSKKIFII 104 P + ++ + + V + + IL+ ++ K K I++ Sbjct: 66 PKNEDPDTEKELWKLVHSKKKYVFSRTQNEIDNQAIFINDNILEEVNKLKKNPGKDIWLY 125 Query: 105 GGGEIYAQTIS--LAHTLYITHIEKEI-EGDVFFPSIDSNI 142 GG + I+ L ++ + EG F + I Sbjct: 126 GGASLITTFINLGLVDEFRLSIHPVVLGEGKPLFIDVKQRI 166 >1ewn_A 3-methyl-adenine DNA glycosylase; DNA repair, AAG, ANPG, MPG, hydrolase/DNA complex; HET: DNA EDA; 2.10A {Homo sapiens} SCOP: b.46.1.2 PDB: 1f4r_A* 1f6o_A* 1bnk_A* Length = 219 Score = 27.5 bits (61), Expect = 1.5 Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%) Query: 151 ITSAGEGDDYPTRFVIYD-RFLSK 173 + AGE P RF + ++S Sbjct: 185 VGHAGEWARKPLRFYVRGSPWVSV 208 >1xhc_A NADH oxidase /nitrite reductase; southeast collaboratory for structural genomics, secsg, hyperthermophIle; HET: FAD; 2.35A {Pyrococcus furiosus dsm 3638} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 Score = 27.4 bits (59), Expect = 1.8 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Query: 99 KKIFIIGGGEI-YAQTISLAHTLYITHIEKE 128 K+ I+G G + L+ T +T I+KE Sbjct: 9 SKVVIVGNGPGGFELAKQLSQTYEVTVIDKE 39 >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural genomics; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hrj_A* 3hri_A Length = 456 Score = 27.2 bits (59), Expect = 2.0 Identities = 7/49 (14%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 68 RDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISL 116 RD R A + + ++ + + A + G+ + ++ E + + Sbjct: 385 RDAGRSADIILDK---KKVVQAFNYADRVGAVRAVLVAPEEWERGEVQV 430 >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Length = 296 Score = 26.1 bits (57), Expect = 4.1 Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 92 LASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDV------FFPSIDSNIWKK 145 + KK+ IIGGG+ L H I E++G V + Sbjct: 85 MFLHPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDP 144 Query: 146 QEKEIITSAGE 156 + + +I + E Sbjct: 145 RAEIVIANGAE 155 >2wl2_A GYRA, DNA gyrase subunit A; isomerase, aminocoumarin antibiotic, drug target, protein-ligand complex; HET: DNA SM8; 2.62A {Escherichia coli} PDB: 1ab4_A 1x75_A* Length = 522 Score = 26.0 bits (57), Expect = 4.4 Identities = 16/75 (21%), Positives = 29/75 (38%) Query: 93 ASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIIT 152 A +TG K++I E+ + T+ + I ++ I + +K+ + I Sbjct: 231 AYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISA 290 Query: 153 SAGEGDDYPTRFVIY 167 E D R VI Sbjct: 291 LRDESDKDGMRIVIE 305 >2o34_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: MSE; 1.95A {Desulfovibrio vulgaris} SCOP: d.96.2.2 Length = 250 Score = 26.0 bits (57), Expect = 4.4 Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 72 RRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110 R V P A +A +I + S ++ + GG++Y Sbjct: 95 RLVGVGPFAAVAGTIAQMVAERFVDVSPELIVENGGDLY 133 >2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S- adenosylmethionine; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A* Length = 259 Score = 26.0 bits (56), Expect = 4.5 Identities = 12/96 (12%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 3 RPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTF---QSIGRLL- 58 E+ V+ + ++ S L+R P + + + I + Sbjct: 163 IGELERALVTHSTVVVMKLSTVRDELVSFLER-----YAKPFLYAEKVGMAGEFITMEVD 217 Query: 59 --PGRT----NIIITRDNTRRASVNPEAVLASSILD 88 R ++++ + R+++++P A ++ L+ Sbjct: 218 ALRSRAIPYFSLLVCSPHCRQSTLSPFASKLAAALE 253 >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* Length = 391 Score = 26.1 bits (56), Expect = 4.6 Identities = 3/15 (20%), Positives = 10/15 (66%) Query: 95 KTGSKKIFIIGGGEI 109 + + ++ ++G GE+ Sbjct: 8 RPAATRVMLLGSGEL 22 >1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Length = 186 Score = 26.2 bits (57), Expect = 4.7 Identities = 11/44 (25%), Positives = 15/44 (34%) Query: 98 SKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSN 141 S +IF G G S A L I G++ P + Sbjct: 37 SHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEG 80 >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* Length = 304 Score = 25.8 bits (56), Expect = 5.1 Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 9/86 (10%) Query: 92 LASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDV------FFPSIDSNIWKK 145 L S +K+ IIGGG+ + H + ++ EI+ DV F P + Sbjct: 90 LCSHPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSS 149 Query: 146 QEKEIITSAGEGDDYPTR---FVIYD 168 + + E +I D Sbjct: 150 KLTLHVGDGFEFMKQNQDAFDVIITD 175 >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Score = 26.0 bits (57), Expect = 5.3 Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 21/46 (45%) Query: 21 CGGMPWKISSDLKRFKSLTTGNPV------VMG---------YRTF 51 C P KI G+ V V+ +RTF Sbjct: 27 CKVYPPKIVERFSE------GDVVCALCGLVLSDKLVDTRSEWRTF 66 >2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 2hl1_A* Length = 143 Score = 25.9 bits (57), Expect = 5.6 Identities = 7/27 (25%), Positives = 15/27 (55%) Query: 77 NPEAVLASSILDSLDLASKTGSKKIFI 103 NPE V +I + +A + ++ +F+ Sbjct: 52 NPEEVSLKAIEEISKVAEQVKAENVFV 78 >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Length = 403 Score = 25.3 bits (54), Expect = 6.9 Identities = 5/12 (41%), Positives = 11/12 (91%) Query: 98 SKKIFIIGGGEI 109 S+K+ ++GGG++ Sbjct: 24 SRKVGVLGGGQL 35 >1fw8_A PGK P72, phosphoglycerate kinase; phosphotransferase, glycolysis, mutant, permutation, permuted sequence, protein folding; 2.30A {Saccharomyces cerevisiae} SCOP: c.86.1.1 Length = 416 Score = 25.4 bits (55), Expect = 7.3 Identities = 8/34 (23%), Positives = 14/34 (41%) Query: 92 LASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 + + + IIGGG+ T I+H+ Sbjct: 286 VVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHV 319 >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434 Score = 25.5 bits (54), Expect = 7.3 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 3/49 (6%) Query: 68 RDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISL 116 R+ +V + L AS G+ I G ++ +++ Sbjct: 356 RERGMNVTVEIME---RGLSAQLKYASAIGADFAVIFGERDLERGVVTI 401 >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Length = 354 Score = 25.3 bits (54), Expect = 7.7 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 98 SKKIFIIGGGEIYAQTISLAHTL-YITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGE 156 SKK+ I+G G ++A + + + V + +I K+ EII + E Sbjct: 8 SKKVCIVGSG---NWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHE 64 Query: 157 GDDY 160 Y Sbjct: 65 NVKY 68 >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Length = 420 Score = 25.3 bits (54), Expect = 8.2 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%) Query: 68 RDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISL 116 R N +A + I + A + G+K +IG E+ I + Sbjct: 353 RHNGIKADKDYLQ---RKIKGQMKQADRLGAKFTIVIGDQELENNKIDV 398 >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 Length = 274 Score = 25.0 bits (54), Expect = 9.3 Identities = 11/24 (45%), Positives = 17/24 (70%) Query: 86 ILDSLDLASKTGSKKIFIIGGGEI 109 ++ SL LA + K+I +IGGGE+ Sbjct: 1 MVKSLQLAHQLKDKRILLIGGGEV 24 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.137 0.396 Gapped Lambda K H 0.267 0.0516 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,527,033 Number of extensions: 67981 Number of successful extensions: 405 Number of sequences better than 10.0: 1 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 68 Length of query: 176 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 90 Effective length of database: 3,608,246 Effective search space: 324742140 Effective search space used: 324742140 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (24.7 bits)