RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus str. psy62] (176 letters) >d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Escherichia coli [TaxId: 562]} Length = 159 Score = 145 bits (366), Expect = 3e-36 Identities = 60/164 (36%), Positives = 84/164 (51%), Gaps = 7/164 (4%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 I LIAA+ + VIG MPW + +DL FK T PV+MG T++SIGR LPGR NII Sbjct: 2 ISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLDKPVIMGRHTWESIGRPLPGRKNII 61 Query: 66 ITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 ++ + V +D A +I +IGGG +Y Q + A LY+THI Sbjct: 62 LSSQ-----PGTDDRVTWVKSVDEAIAACGD-VPEIMVIGGGRVYEQFLPKAQKLYLTHI 115 Query: 126 EKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + E+EGD FP + + W+ E A + + F I +R Sbjct: 116 DAEVEGDTHFPDYEPDDWESVFSEFH-DADAQNSHSYCFEILER 158 >d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Haloferax volcanii [TaxId: 2246]} Length = 157 Score = 136 bits (343), Expect = 1e-33 Identities = 45/166 (27%), Positives = 85/166 (51%), Gaps = 11/166 (6%) Query: 5 EIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTN 63 E++ +AA+ N VIG G +PW I +D K+++S +PVV+G TF+S+ LPG Sbjct: 1 ELVSVAALAENRVIGRDGELPWPSIPADKKQYRSRIADDPVVLGRTTFESMRDDLPGSAQ 60 Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYIT 123 I+++R A A+S+ +++D+A+ ++ ++IGG IYA + ++ Sbjct: 61 IVMSRSERS--FSVDTAHRAASVEEAVDIAASLDAETAYVIGGAAIYALFQPHLDRMVLS 118 Query: 124 HIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 + E EGD ++P D+ W+ + + + + + R Sbjct: 119 RVPGEYEGDTYYPEWDAAEWELDAET------DHEGF--TLQEWVR 156 >d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Lactobacillus casei [TaxId: 1582]} Length = 162 Score = 131 bits (331), Expect = 3e-32 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 6/163 (3%) Query: 8 LIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSI-GRLLPGRTNIII 66 + A RN +IG G +PW + DL F++ T G +V+G RT++S R LP RTN+++ Sbjct: 3 FLWAQNRNGLIGKDGHLPWHLPDDLHYFRAQTVGKIMVVGRRTYESFPKRPLPERTNVVL 62 Query: 67 TRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYITHIE 126 T + AV+ + A + +++ I GG +I+ TL +T + Sbjct: 63 THQEDYQ---AQGAVVVHDVAAVFAYAKQHLDQELVIAGGAQIFTAFKDDVDTLLVTRLA 119 Query: 127 KEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 EGD ++ + + K + + ++ + Sbjct: 120 GSFEGDTKMIPLNWDDFTKVSSRTV--EDTNPALTHTYEVWQK 160 >d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Bacteriophage T4 [TaxId: 10665]} Length = 193 Score = 126 bits (317), Expect = 1e-30 Identities = 36/186 (19%), Positives = 66/186 (35%), Gaps = 29/186 (15%) Query: 7 ILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPGRTNII 65 G G+PW ++ DL+ FK+ T G ++MG +TFQS+ LLPGR++I+ Sbjct: 11 TKTVDGFNELAFGLGDGLPWGRVKKDLQNFKARTEGTIMIMGAKTFQSLPTLLPGRSHIV 70 Query: 66 ITRDNTRRA------------------SVNPEAVLASSILDSLDLASKTGSKKIFIIGGG 107 + + + S ++ + K+ +IGG Sbjct: 71 VCDLARDYPVTKDGDLAHFYITWEQYITYISGGEIQVSSPNAPFETMLDQNSKVSVIGGP 130 Query: 108 EIYAQTISLAHTLYITHIEKE------IEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYP 161 + + A + ++ I K ++ D F D + + E E Sbjct: 131 ALLYAALPYADEVVVSRIVKRHRVNSTVQLDASFL-DDISKREMVETHWYK-IDEVTTL- 187 Query: 162 TRFVIY 167 +Y Sbjct: 188 -TESVY 192 >d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type {Human (Homo sapiens) [TaxId: 9606]} Length = 186 Score = 126 bits (316), Expect = 1e-30 Identities = 43/183 (23%), Positives = 83/183 (45%), Gaps = 17/183 (9%) Query: 4 PEIILIAAITRNNVIGSCGGMPW-KISSDLKRFKSLTTG-------NPVVMGYRTFQSI- 54 + I A+++N IG G +PW + ++ + F+ +TT N V+MG +T+ SI Sbjct: 2 GSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIP 61 Query: 55 --GRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSL--DLASKTGSKKIFIIGGGEIY 110 R L GR N++++R+ + L ++I+GG +Y Sbjct: 62 EKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVY 121 Query: 111 AQTISLAHT--LYITHIEKEIEGDVFFPSIDSNIWK--KQEKEIITSAGEGDDYPTRFVI 166 + ++ L++T I ++ E D FFP ID +K + +++ E +F + Sbjct: 122 KEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEV 181 Query: 167 YDR 169 Y++ Sbjct: 182 YEK 184 >d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, DFR domain {Cryptosporidium hominis [TaxId: 237895]} Length = 178 Score = 123 bits (310), Expect = 6e-30 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 15/174 (8%) Query: 7 ILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-------NPVVMGYRTFQSI-GRLL 58 I++AA ++ IG G +PW IS DLK F +T N ++MG +T+ SI R L Sbjct: 6 IVVAASVLSSGIGINGQLPWSISEDLKFFSKITNNKCDSNKKNALIMGRKTWDSIGRRPL 65 Query: 59 PGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTIS--L 116 R ++I+ + + V + +L + + IF+ GG IY + Sbjct: 66 KNRIIVVISSSLPQDEADPNVVVFRNLEDSIENLMNDDSIENIFVCGGESIYRDALKDNF 125 Query: 117 AHTLYITHIEKE-IEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 +Y+T + E IE D +FP I + + + F+I+++ Sbjct: 126 VDRIYLTRVALEDIEFDTYFPEIPETFLPVYMSQTFCT----KNISYDFMIFEK 175 >d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Mycobacterium tuberculosis [TaxId: 1773]} Length = 159 Score = 123 bits (310), Expect = 8e-30 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 19/170 (11%) Query: 6 IILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIG---RLLPGRT 62 + LI A + VIG G +PW++ D F+ +T G+ +VMG RT+ S+ R LPGR Sbjct: 2 VGLIWAQATSGVIGRGGDIPWRLPEDQAHFREITMGHTIVMGRRTWDSLPAKVRPLPGRR 61 Query: 63 NIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTLYI 122 N++++R AS ++ SL+ A + + ++IGGG++YA + A + Sbjct: 62 NVVLSRQADFMASGAE-------VVGSLEEALTS--PETWVIGGGQVYALALPYATRCEV 112 Query: 123 THIE---KEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDR 169 T ++ GD P +D W+ + E S R Y R Sbjct: 113 TEVDIGLPREAGDALAPVLDET-WRGETGEWRFSR---SGLRYRLYSYHR 158 >d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type {Yeast (Candida albicans) [TaxId: 5476]} Length = 192 Score = 123 bits (309), Expect = 1e-29 Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 30/195 (15%) Query: 1 MTRPEI-ILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTT-------GNPVVMGYRTFQ 52 M +P + I++AA+ IG G MPW++ +++ FK +TT N V+MG +T++ Sbjct: 1 MLKPNVAIIVAALKPALGIGYKGKMPWRLRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWE 60 Query: 53 SIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEI 109 SI R LP R NII++R + ++ + ASSI SL+L + +++FIIGG EI Sbjct: 61 SIPQKFRPLPDRLNIILSR-SYENEIIDDNIIHASSIESSLNLV--SDVERVFIIGGAEI 117 Query: 110 YAQTIS--LAHTLYITHIE----KEIEGDVFFPSIDSNIWKKQEKE---------IITSA 154 Y + I+ L L IT IE + IE D F W KQ K ++ Sbjct: 118 YNELINNSLVSHLLITEIEHPSPESIEMDTFLK-FPLESWTKQPKSELQKFVGDTVLEDD 176 Query: 155 GEGDDYPTRFVIYDR 169 + D+ + ++ R Sbjct: 177 IKEGDFTYNYTLWTR 191 >d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic type {Fungus (Pneumocystis carinii) [TaxId: 4754]} Length = 206 Score = 122 bits (307), Expect = 1e-29 Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 34/201 (16%) Query: 3 RPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNP----------VVMGYRTFQ 52 + + LI A+T + IG +PWK+ ++ FK +T+ P V+MG +T++ Sbjct: 4 QKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWE 63 Query: 53 SI---GRLLPGRTNIIITRDNTRRASVNPEAV-----LASSILDSLDLASKTGSKKIFII 104 SI R L GR N++ITR+ + + + + S +IF+I Sbjct: 64 SIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVI 123 Query: 105 GGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPS-IDSNIWKKQEKE------------ 149 GG ++Y + + T I K+I DVFFP W K+ Sbjct: 124 GGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGT 183 Query: 150 -IITSAGEGDDYPTRFVIYDR 169 + D + F ++ R Sbjct: 184 KVPHGKINEDGFDYEFEMWTR 204 >d1j3ka_ c.71.1.1 (A:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, DFR domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 231 Score = 113 bits (282), Expect = 1e-26 Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 45/196 (22%) Query: 15 NNVIGSCGGMPWK-ISSDLKRFKSLTT--------------------------------- 40 +G+ G +PWK IS D+K F+++TT Sbjct: 37 FRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSK 96 Query: 41 --GNPVVMGYRTFQSIG---RLLPGRTNIIITRDNTRRASVNPEAVLASSILDSLDLASK 95 N VVMG ++SI + L R N+I++R ++ + + + + + D + L K Sbjct: 97 KLQNVVVMGRTNWESIPKKFKPLSNRINVILSR-TLKKEDFDEDVYIINKVEDLIVLLGK 155 Query: 96 TGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITS 153 K FI+GG +Y + + L +Y T I E DVFFP I+ N ++ + Sbjct: 156 LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISVSDVY- 214 Query: 154 AGEGDDYPTRFVIYDR 169 ++ F+IY + Sbjct: 215 --TSNNTTLDFIIYKK 228 >d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Thermotoga maritima [TaxId: 2336]} Length = 164 Score = 87.2 bits (215), Expect = 7e-19 Identities = 38/166 (22%), Positives = 68/166 (40%), Gaps = 8/166 (4%) Query: 5 EIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTG-NPVVMGYRTFQSIGRLLPGRTN 63 ++I + A+ + I S W D K F+ +TT VVMG TF+ IGR LP R N Sbjct: 2 KVIFVLAMDVSGKIAS-SVESWSSFEDRKNFRKITTEIGNVVMGRITFEEIGRPLPERLN 60 Query: 64 IIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISL--AHTLY 121 +++TR + + S D + G +++ +IGG ++ + + L+ Sbjct: 61 VVLTRRPKTSNNPSLVFF-NGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELF 119 Query: 122 ITHIEKEI-EGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVI 166 +T +G FF + K + E ++ + Sbjct: 120 VTVEPYVFGKGIPFFDEFEGYFPLKLLEM--RRLNERGTLFLKYSV 163 >d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG, MPG) {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Score = 28.0 bits (62), Expect = 0.45 Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 1/24 (4%) Query: 151 ITSAGEGDDYPTRFVIYD-RFLSK 173 + AGE P RF + ++S Sbjct: 183 VGHAGEWARKPLRFYVRGSPWVSV 206 >d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Length = 186 Score = 27.1 bits (59), Expect = 0.90 Identities = 11/44 (25%), Positives = 15/44 (34%) Query: 98 SKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSN 141 S +IF G G S A L I G++ P + Sbjct: 37 SHQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEILTPPLAEG 80 >d2o34a1 d.96.2.2 (A:1-248) Hypothetical protein DVU1097 {Desulfovibrio vulgaris [TaxId: 881]} Length = 248 Score = 26.4 bits (58), Expect = 1.6 Identities = 10/39 (25%), Positives = 18/39 (46%) Query: 72 RRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIY 110 R V P A +A +I + S ++ + GG++Y Sbjct: 94 RLVGVGPFAAVAGTIAQMVAERFVDVSPELIVENGGDLY 132 >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Score = 26.3 bits (57), Expect = 1.6 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 86 ILDSLDLASKTGSKKIFIIGGGEIYAQTIS--LAHTLYITHIEKEIEGDV 133 ++ SL LA + K+I +IGGGE+ + + +T + ++ + Sbjct: 1 MVKSLQLAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSI 50 >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146 Score = 25.8 bits (56), Expect = 2.1 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 98 SKKIFIIGGGEIYAQTISLAHTLYITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSA 154 ++KI IIG G + A ++AH L I + + D F + K + + + Sbjct: 1 ARKIGIIGLGNVGA---AVAHGL----IAQGVADDYVFIDANEAKVKADQIDFQDAM 50 >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 Score = 25.1 bits (53), Expect = 3.2 Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 4/34 (11%) Query: 99 KKIFIIGGG----EIYAQTISLAHTLYITHIEKE 128 +K+ ++GGG ++ +T IE Sbjct: 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPN 36 >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148 Score = 24.3 bits (52), Expect = 6.8 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%) Query: 95 KTGSKKIFIIGGGEIYAQTISLAHTLYITHIEKEI 129 G ++ +IG G + A S L I EI Sbjct: 3 NNGGARVVVIGAGFVGA---SYVFALMNQGIADEI 34 >d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]} Length = 366 Score = 24.0 bits (51), Expect = 7.7 Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 108 EIYAQTISLAHTL--YITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAG 155 EIY Q ++ +TL I+H + ++ + K E I + G Sbjct: 13 EIYEQPNAIKNTLTGRISHGQVDLSE---LGPNADELLSKVEHIQILACG 59 >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} Length = 171 Score = 23.8 bits (50), Expect = 7.8 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Query: 99 KKIFIIGGGEIYAQTISLAHTLYITHIEKEIEG 131 + + I+G G + S A +L + + +I G Sbjct: 2 QNVLIVGVGFMGG---SFAKSLRRSGFKGKIYG 31 >d1qpga_ c.86.1.1 (A:) Phosphoglycerate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 415 Score = 23.9 bits (51), Expect = 8.2 Identities = 8/34 (23%), Positives = 14/34 (41%) Query: 92 LASKTGSKKIFIIGGGEIYAQTISLAHTLYITHI 125 + + + IIGGG+ T I+H+ Sbjct: 356 VVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHV 389 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.137 0.396 Gapped Lambda K H 0.267 0.0509 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 659,430 Number of extensions: 29027 Number of successful extensions: 154 Number of sequences better than 10.0: 1 Number of HSP's gapped: 115 Number of HSP's successfully gapped: 35 Length of query: 176 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 97 Effective length of database: 1,322,926 Effective search space: 128323822 Effective search space used: 128323822 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 50 (23.6 bits)