BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780957|ref|YP_003065370.1| dihydrofolate reductase
protein [Candidatus Liberibacter asiaticus str. psy62]
         (176 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780957|ref|YP_003065370.1| dihydrofolate reductase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 176

 Score =  360 bits (923), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPG 60
           MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPG
Sbjct: 1   MTRPEIILIAAITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRLLPG 60

Query: 61  RTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTL 120
           RTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTL
Sbjct: 61  RTNIIITRDNTRRASVNPEAVLASSILDSLDLASKTGSKKIFIIGGGEIYAQTISLAHTL 120

Query: 121 YITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFLSKNCS 176
           YITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFLSKNCS
Sbjct: 121 YITHIEKEIEGDVFFPSIDSNIWKKQEKEIITSAGEGDDYPTRFVIYDRFLSKNCS 176


>gi|254780549|ref|YP_003064962.1| signal peptide protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 271

 Score = 33.1 bits (74), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 11/75 (14%)

Query: 11  AITRNNVIGSCGGMPWKISSDLKRFKSLTTGNPVVMGYRTFQSIGRL---LPGRTNII-- 65
           AI RN VI +     W I SD KRFK L       +  + F  +G++   + G T ++  
Sbjct: 180 AIVRNRVIAN-----WNIPSDFKRFKKLRVKMHFQLNQKGF-VLGKINVDVVGGTELVRR 233

Query: 66  ITRDNTRRASVNPEA 80
           + R+N R+A +  +A
Sbjct: 234 MLRENARKAVIKSQA 248


>gi|254781065|ref|YP_003065478.1| L-lysine 2,3-aminomutase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 352

 Score = 25.4 bits (54), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 10/44 (22%), Positives = 25/44 (56%)

Query: 38  LTTGNPVVMGYRTFQSIGRLLPGRTNIIITRDNTRRASVNPEAV 81
            T G+P+++ ++  Q + + L    ++ I R ++R   V+P+ +
Sbjct: 149 FTGGDPLILSHKRLQKVLKTLRYIKHVQILRFHSRVPIVDPQRI 192


>gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate hydrolase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 160

 Score = 24.6 bits (52), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 54  IGRLLPGRTNIIITRDNTRRASVNPEAVLASSILDSL--DLASKTGSKKIFIIGGGEIYA 111
           +GR      N  ++     +  +NP+       LD+   +L  +TG K I ++G G+ Y 
Sbjct: 19  VGRRCFHDNNKHLSLWQMPQGGINPQ----EDPLDAAYRELYEETGIKSISLLGQGDSYI 74

Query: 112 QTISLAHTL----YITHIEK 127
           Q    AH +    Y+  ++K
Sbjct: 75  QYDFPAHCIQENGYVGQMQK 94


>gi|254780200|ref|YP_003064613.1| ferrochelatase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 343

 Score = 23.1 bits (48), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 98  SKKIFIIGGGEIYAQTISL-AHTLYITHIEK 127
           +K+IF+ GGGE + Q   L +  L I  +EK
Sbjct: 303 AKEIFVNGGGEKFTQVPCLNSSNLSIDLLEK 333


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 22.7 bits (47), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 52  QSIGRLLPGRTNIIITR 68
           Q++ RL+ GRT I+I  
Sbjct: 530 QALSRLMQGRTTIVIAH 546


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,279
Number of Sequences: 1233
Number of extensions: 4739
Number of successful extensions: 15
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 176
length of database: 328,796
effective HSP length: 68
effective length of query: 108
effective length of database: 244,952
effective search space: 26454816
effective search space used: 26454816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)