HHsearch alignment for GI: 254780958 and conserved domain: COG0330
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].
Probab=94.72 E-value=0.34 Score=27.18 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=58.5
Q ss_pred HHHHCCHHHHHHHH--HHHHHHHHHHCCCCCCCCCC-CHHHH-H--H-HHHHHHHHHHCCCCCEEEEEEEEEECCCHHH-
Q ss_conf 32012989999888--77767777530100000155-46788-7--7-7999988863123461798753430156257-
Q gi|254780958|r 156 LFNLENPGETLKQV--SESAMREVVGRRFAVDIFRS-QRQQI-A--L-EVRNLIQKTMDYYKSGILINTISIEDASPPR- 227 (355)
Q Consensus 156 ~~~v~~~~~~l~~~--~esalR~vvg~~~~d~ilt~-~R~~i-~--~-~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~- 227 (355)
T Consensus 94 ~~rv~d~~~~~~~v~~~~~~i~~~~-~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~---~~~~~Gi~V~~V~i~~i 169 (291)
T COG0330 94 QYRVTDPQKAVYNVENAEAALRQLV-QSALRSVIGRMTLDELLTERRAEINAKIREILDE---AADPWGIKVVDVEIKDI 169 (291)
T ss_pred EEEECCHHHHEEEECCHHHHHHHHH-HHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH---HHCCCCCEEEEEEEEEC
T ss_conf 9998773774367268899999999-9999999734318887506558899999999997---61258818999888755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999988788999999999999998776889999999977789999999972322999
Q gi|254780958|r 228 EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 (355)
Q Consensus 228 ~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r 289 (355)
T Consensus 170 ~~p~ev---~~a~~~~~~----Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a 224 (291)
T COG0330 170 DPPEEV---QAAMEKQMA----AERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA 224 (291)
T ss_pred CCCHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999---999999999----9999999999978788876544577899999999989877