HHsearch alignment for GI: 254780958 and conserved domain: PRK11029
>PRK11029 FtsH protease regulator HflC; Provisional.
Probab=100.00 E-value=0 Score=407.50 Aligned_cols=273 Identities=20% Similarity=0.313 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC------CCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 9999999999999974214538899999875331135------5589836645753236872204899982672211476
Q gi|254780958|r 53 VYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKND------VFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGS 126 (355)
Q Consensus 53 i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~------v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~ 126 (355)
T Consensus 4 ~ilviii~vlv~l~~s~yiV~e~e~aVVlrFGk~vr~~~~~~~v~ePGLhfkiPfI~~V~~~d~Ri~~~d~~~------- 76 (334)
T PRK11029 4 SVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQTMDNQA------- 76 (334)
T ss_pred HHHHHHHHHHHHHHHEEEEECCCEEEEEEECCCEECCCCCCCCCCCCCEEEECCCCCEEEECCCEEEEEECCC-------
T ss_conf 5999999999999856899757708999966955236677764358980587375418898122799760797-------
Q ss_pred CCEEEEECCCEEEEEEEEEEEEECCHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 65036606841887634434221588785320-----1298999988877767777530100000155467887779999
Q gi|254780958|r 127 NSGLILTGDQNIVGLHFSVLYVVTDPRLYLFN-----LENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNL 201 (355)
Q Consensus 127 ~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~-----v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~ 201 (355)
T Consensus 77 --~~vlT~D~k~i~VD~~v~wrI~Dp~~fy~~~~~~~~~~a~~~l~~~~~s~lR~~ig~~~l~eiis~~R~~l~~~v~~~ 154 (334)
T PRK11029 77 --DRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDA 154 (334)
T ss_pred --CEEEECCCCEEEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf --268851784899855899997378998988544317789999999989999999732769888301088999999999
Q ss_pred HHHH---------------------------------------HCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8886---------------------------------------3123461798753430156257899999999887889
Q gi|254780958|r 202 IQKT---------------------------------------MDYYKSGILINTISIEDASPPREVADAFDEVQRAEQD 242 (355)
Q Consensus 202 lq~~---------------------------------------l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe 242 (355)
T Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~s~~~~--GIeVvdV~ikrid~P~~v~~av~~rM~aER~ 232 (334)
T PRK11029 155 LNSGSAGTEDEVATPAADDAIAEAAERVTAETKGKVPVINPNSMAAL--GIEVVDVRIKQINLPTEVSEAIYNRMRAERE 232 (334)
T ss_pred HHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCEEEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 74301332001011110023445566677775432211011101125--8389999987448988999999999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999--99999999987768899999999777899999999723229999999999986999999999999999983799
Q gi|254780958|r 243 EDRF--VEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYLETMEGILKKA 320 (355)
Q Consensus 243 ~er~--i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~~ 320 (355)
T Consensus 233 ~~A~~~raeG~~~a~~Ir--a~ad~e~~~i~AeA~r~a~~irgegdAea~~iya~Ay~kdpefy~f~rsLeay~~~l~~~ 310 (334)
T PRK11029 233 AVARRHRSQGQEEAEKLR--ATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSFSGN 310 (334)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999987899999989--888888899988899899999837889999999999733989999999999999995699
Q ss_pred CEE-EEECCCCEEEEECHH
Q ss_conf 599-996799847540347
Q gi|254780958|r 321 KKV-IIDKKQSVMPYLPLN 338 (355)
Q Consensus 321 ~k~-ii~~~~~~~~yLpl~ 338 (355)
T Consensus 311 ~~~lVl~~ds~f~~y~~~~ 329 (334)
T PRK11029 311 QDVMVLSPDSDFFRYMKTP 329 (334)
T ss_pred CCEEEECCCCHHHHHHCCC
T ss_conf 9589989881799850598