HHsearch alignment for GI: 254780958 and conserved domain: TIGR01932
>TIGR01932 hflC HflC protein; InterPro: IPR010200 HflK and HflC are paralogs encoded by tandem genes in proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. ; GO: 0005515 protein binding, 0008233 peptidase activity, 0016021 integral to membrane.
Probab=100.00 E-value=2.9e-39 Score=280.53 Aligned_cols=270 Identities=22% Similarity=0.352 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC------CCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 9999999999999974214538899999875331135------5589836645753236872204899982672211476
Q gi|254780958|r 53 VYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKND------VFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGS 126 (355)
Q Consensus 53 i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~------v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~ 126 (355)
T Consensus 5 ~i~~iv~~~~~~l~~~~f~ikEGe~gI~~RFGki~~d~N~~~lvY~pGLh~K~Pfie~Vk~~~a~Iqt~Dg~~dr----- 79 (345)
T TIGR01932 5 VIVVIVLLTIVVLFQPFFIIKEGERGIILRFGKILKDDNDKVLVYEPGLHFKIPFIESVKIFDAKIQTMDGRPDR----- 79 (345)
T ss_pred EEHHHHHHHHHHHHCCEEEEECCCEEEEEECCEEEEECCCCCEEECCCCCEECCCCCCCCCCCCEEEEECCCCCC-----
T ss_conf 322889999999861201631484767654160687348853254687624357304421033000200678361-----
Q ss_pred CCEEEEE--CCCEEEEEEEEEEEEECCHHHHHHHHC--C---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-------
Q ss_conf 6503660--684188763443422158878532012--9---8999988877767777530100000155467-------
Q gi|254780958|r 127 NSGLILT--GDQNIVGLHFSVLYVVTDPRLYLFNLE--N---PGETLKQVSESAMREVVGRRFAVDIFRSQRQ------- 192 (355)
Q Consensus 127 ~~~~mLT--~D~n~V~v~~~V~yrI~Dp~~~~~~v~--~---~~~~l~~~~esalR~vvg~~~~d~ilt~~R~------- 192 (355)
T Consensus 80 ----~~TGGkEKk~~~~DTy~~WrI~D~~~yYl~~Ggg~~~~Ae~li~~~~~~~lR~~I~~~~~~~Iv~~~~~~~vlPE~ 155 (345)
T TIGR01932 80 ----IVTGGKEKKDIIVDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIEDRLRSEIGKLELKEIVRSSRDINVLPES 155 (345)
T ss_pred ----CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCEEEECCCCEEECCCC
T ss_conf ----2257764422788265420156555762105886589999999873074442153306860022076540313577
Q ss_pred ----HH-HHHHHHHH----------------------------------------HHHHCCCCCEEEEEEEEEECCCHHH
Q ss_conf ----88-77799998----------------------------------------8863123461798753430156257
Q gi|254780958|r 193 ----QI-ALEVRNLI----------------------------------------QKTMDYYKSGILINTISIEDASPPR 227 (355)
Q Consensus 193 ----~i-~~~v~~~l----------------------------------------q~~l~~y~~GI~V~~V~i~~v~~P~ 227 (355)
T Consensus 156 ~~S~~l~~~~~~~a~~~~~~~~tedevt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--d~Gi~vVDV~ikkI~~~~ 233 (345)
T TIGR01932 156 NDSEQLDTLSIKLALNAEGKINTEDEVTYKAVIFKIAIKIEKGREILEKEILQIANNQLK--DLGIEVVDVRIKKINLSD 233 (345)
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HCCEEEEEEEEECCCCCH
T ss_conf 777501046787521455566751010027899999874332146787654303700053--289189999850313788
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCHHHH
Q ss_conf 899999999887889--9999999999999877688999999997778999999997232299999999-9998699999
Q gi|254780958|r 228 EVADAFDEVQRAEQD--EDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIY-GQYVNAPTLL 304 (355)
Q Consensus 228 ~v~~A~~~v~~A~qe--~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~-~~Y~~ap~vt 304 (355)
T Consensus 234 e~~esi~nRm~~ER~~iA~~~RS~G~~~aee~~~~~~~Ev~~iL--seA~~~A~~ikgEgDA~A-AK~ysdAy~K~PEFy 310 (345)
T TIGR01932 234 ELSESIYNRMRSEREQIARKHRSQGEEKAEELRGKADYEVLKIL--SEAKRTARIIKGEGDAEA-AKIYSDAYGKDPEFY 310 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHH
T ss_conf 89999999899999999998443666889999852527788788--998873534312576999-999998747895388
Q ss_pred HHHHHHHHHHHHHCC--CCEEEEE-CCCCEEEEEC
Q ss_conf 999999999998379--9599996-7998475403
Q gi|254780958|r 305 RKRIYLETMEGILKK--AKKVIID-KKQSVMPYLP 336 (355)
Q Consensus 305 ~~rlylet~~~vl~~--~~k~ii~-~~~~~~~yLp 336 (355)
T Consensus 311 ~F~rSL~aYe~~f~~k~~d~~v~se~d~~FF~Ym~ 345 (345)
T TIGR01932 311 SFIRSLEAYEKSFKDKNQDLKVLSETDSDFFRYMY 345 (345)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHCCC
T ss_conf 99999999998626677606886088715652059