HHsearch alignment for GI: 254780958 and conserved domain: TIGR01932
>TIGR01932 hflC HflC protein; InterPro: IPR010200 HflK and HflC are paralogs encoded by tandem genes in proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. ; GO: 0005515 protein binding, 0008233 peptidase activity, 0016021 integral to membrane.
Probab=96.75 E-value=0.0048 Score=39.53 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=61.4
Q ss_pred EEEEEEEEECCCHHHHHHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 798753430156257899999--9998878-------8999999999999998776889999999977789999999972
Q gi|254780958|r 213 ILINTISIEDASPPREVADAF--DEVQRAE-------QDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEA 283 (355)
Q Consensus 213 I~V~~V~i~~v~~P~~v~~A~--~~v~~A~-------qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A 283 (355)
T Consensus 224 V~ikkI~~~~-e~~esi~nRm~~ER~~iA~~~RS~G~~~aee~~~~~~~Ev~~iLseA~~~A~~ikgEgDA~AAK~ysdA 302 (345)
T TIGR01932 224 VRIKKINLSD-ELSESIYNRMRSEREQIARKHRSQGEEKAEELRGKADYEVLKILSEAKRTARIIKGEGDAEAAKIYSDA 302 (345)
T ss_pred EEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9850313788-899999998999999999984436668899998525277887889988735343125769999999987
Q ss_pred HHHHHHHHHHH---HHHHHC
Q ss_conf 32299999999---999869
Q gi|254780958|r 284 QGEADRFLSIY---GQYVNA 300 (355)
Q Consensus 284 ~gea~rf~~i~---~~Y~~a 300 (355)
T Consensus 303 y~K~PEFy~F~rSL~aYe~~ 322 (345)
T TIGR01932 303 YGKDPEFYSFIRSLEAYEKS 322 (345)
T ss_pred HCCCCCHHHHHHHHHHHHHH
T ss_conf 47895388999999999986