HHsearch alignment for GI: 254780958 and conserved domain: cd03399

>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.32  E-value=1.4e-11  Score=96.30  Aligned_cols=100  Identities=20%  Similarity=0.310  Sum_probs=85.2

Q ss_pred             EEECCCEEEEEEEEEEEEECCHHHHHHHH---------CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             66068418876344342215887853201---------298999988877767777530100000155467887779999
Q gi|254780958|r  131 ILTGDQNIVGLHFSVLYVVTDPRLYLFNL---------ENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNL  201 (355)
Q Consensus       131 mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v---------~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~  201 (355)
T Consensus        16 viT~D~v~v~v~av~~vkV~~~~~~i~~aaq~fl~~~~~~i~~~~~~~~~g~LR~ivg~mtleei~~-~R~~f~~~V~~~   94 (128)
T cd03399          16 VITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYE-DRDKFAEQVQEV   94 (128)
T ss_pred             EEECCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHH
T ss_conf             4835996899999999996897999999999883589999999999999999999985588999997-499999999999


Q ss_pred             HHHHHCCCCCEEEEEEEEEECCCHHHHHHHHH
Q ss_conf             88863123461798753430156257899999
Q gi|254780958|r  202 IQKTMDYYKSGILINTISIEDASPPREVADAF  233 (355)
Q Consensus       202 lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~  233 (355)
T Consensus        95 i~~~l~~~--GL~l~sv~I~di~d~~~y~~~l  124 (128)
T cd03399          95 VAPDLNKM--GLELDSFTIKDITDTDGYLNNL  124 (128)
T ss_pred             HHHHHHHC--CCEEEEEEEEEECCCCCHHHHC
T ss_conf             99999956--8799999989857975489877