HHsearch alignment for GI: 254780958 and conserved domain: cd03400

>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.54  E-value=3.4e-14  Score=113.76  Aligned_cols=105  Identities=18%  Similarity=0.331  Sum_probs=89.9

Q ss_pred             EEEECCCEEEEEEEEEEEEEC-CHHHHHHH---HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             366068418876344342215-88785320---12989999888777677775301000001554678877799998886
Q gi|254780958|r  130 LILTGDQNIVGLHFSVLYVVT-DPRLYLFN---LENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT  205 (355)
Q Consensus       130 ~mLT~D~n~V~v~~~V~yrI~-Dp~~~~~~---v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~  205 (355)
T Consensus        15 ~vlskdgl~v~~dvtV~Y~v~~~~~~~l~~~~G~~y~~~iI~p~vrs~~R~v~~~y~a~elys~kR~~i~~~I~~~l~~~   94 (124)
T cd03400          15 DVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIKKELIEE   94 (124)
T ss_pred             EEECCCCCEEEEEEEEEEEECHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87878997899999999999888899999984977777352178999999997337899998857999999999999998


Q ss_pred             HCCCCCEEEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf             3123461798753430156257899999999
Q gi|254780958|r  206 MDYYKSGILINTISIEDASPPREVADAFDEV  236 (355)
Q Consensus       206 l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v  236 (355)
T Consensus        95 l~~~--gi~ve~VlIr~I~lP~~~~~AIE~K  123 (124)
T cd03400          95 FVGD--GLILEEVLLRNIKLPDQIADAIEAK  123 (124)
T ss_pred             HHHC--CEEEEEEEEEEEECCHHHHHHHHHC
T ss_conf             8638--9599999999752898999999841