HHsearch alignment for GI: 254780958 and conserved domain: cd03400
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.54 E-value=3.4e-14 Score=113.76 Aligned_cols=105 Identities=18% Similarity=0.331 Sum_probs=89.9
Q ss_pred EEEECCCEEEEEEEEEEEEEC-CHHHHHHH---HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 366068418876344342215-88785320---12989999888777677775301000001554678877799998886
Q gi|254780958|r 130 LILTGDQNIVGLHFSVLYVVT-DPRLYLFN---LENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT 205 (355)
Q Consensus 130 ~mLT~D~n~V~v~~~V~yrI~-Dp~~~~~~---v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~ 205 (355)
T Consensus 15 ~vlskdgl~v~~dvtV~Y~v~~~~~~~l~~~~G~~y~~~iI~p~vrs~~R~v~~~y~a~elys~kR~~i~~~I~~~l~~~ 94 (124)
T cd03400 15 DVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIKKELIEE 94 (124)
T ss_pred EEECCCCCEEEEEEEEEEEECHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87878997899999999999888899999984977777352178999999997337899998857999999999999998
Q ss_pred HCCCCCEEEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 3123461798753430156257899999999
Q gi|254780958|r 206 MDYYKSGILINTISIEDASPPREVADAFDEV 236 (355)
Q Consensus 206 l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v 236 (355)
T Consensus 95 l~~~--gi~ve~VlIr~I~lP~~~~~AIE~K 123 (124)
T cd03400 95 FVGD--GLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHC--CEEEEEEEEEEEECCHHHHHHHHHC
T ss_conf 8638--9599999999752898999999841