HHsearch alignment for GI: 254780958 and conserved domain: cd03402

>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00  E-value=3.5e-35  Score=253.40  Aligned_cols=163  Identities=20%  Similarity=0.236  Sum_probs=144.9

Q ss_pred             HHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEE
Q ss_conf             42145388999998753311355589836645753236872204899982672211476650366068418876344342
Q gi|254780958|r   68 SIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLY  147 (355)
Q Consensus        68 g~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~y  147 (355)
T Consensus         1 G~~iV~p~ea~Vv~~FGky~gti~~pGL~~~~Pf~~~-~~vd~R~~~~d~~~q~---------v~t~D~~~i~IdavV~w   70 (219)
T cd03402           1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLK---------VNDANGNPIEIAAVIVW   70 (219)
T ss_pred             CCEEECCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEE-EEEEEEEEEECCCCEE---------EECCCCCEEEEEEEEEE
T ss_conf             9389782655688733770575468982899626878-9973058975168657---------58489998999899999


Q ss_pred             EECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf             2158878532012989999888777677775301000001------5546788777999988863123461798753430
Q gi|254780958|r  148 VVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIF------RSQRQQIALEVRNLIQKTMDYYKSGILINTISIE  221 (355)
Q Consensus       148 rI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~il------t~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~  221 (355)
T Consensus        71 rV~Dp~kA~~~V~n~~~~v~~~aetaLR~v~g~~~~D~~~~~~~~L~~~rd~I~~~l~~~l~e~~~~~--GI~V~~vrIk  148 (219)
T cd03402          71 RVVDTAKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVA--GVEVVEARIT  148 (219)
T ss_pred             EECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC--CCEEEEEEEC
T ss_conf             98488999874265999999999999999862367410101345551489999999999987776630--9799999972


Q ss_pred             CCCHHHHHHHHHHHHHHHHHH
Q ss_conf             156257899999999887889
Q gi|254780958|r  222 DASPPREVADAFDEVQRAEQD  242 (355)
Q Consensus       222 ~v~~P~~v~~A~~~v~~A~qe  242 (355)
T Consensus       149 ~i~~p~eIa~AM~~r~qAea~  169 (219)
T cd03402         149 HLAYAPEIAQAMLQRQQASAI  169 (219)
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
T ss_conf             535989999999999999999