HHsearch alignment for GI: 254780958 and conserved domain: cd03402
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=3.5e-35 Score=253.40 Aligned_cols=163 Identities=20% Similarity=0.236 Sum_probs=144.9
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEE
Q ss_conf 42145388999998753311355589836645753236872204899982672211476650366068418876344342
Q gi|254780958|r 68 SIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLY 147 (355)
Q Consensus 68 g~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~y 147 (355)
T Consensus 1 G~~iV~p~ea~Vv~~FGky~gti~~pGL~~~~Pf~~~-~~vd~R~~~~d~~~q~---------v~t~D~~~i~IdavV~w 70 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLK---------VNDANGNPIEIAAVIVW 70 (219)
T ss_pred CCEEECCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEE-EEEEEEEEEECCCCEE---------EECCCCCEEEEEEEEEE
T ss_conf 9389782655688733770575468982899626878-9973058975168657---------58489998999899999
Q ss_pred EECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 2158878532012989999888777677775301000001------5546788777999988863123461798753430
Q gi|254780958|r 148 VVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIF------RSQRQQIALEVRNLIQKTMDYYKSGILINTISIE 221 (355)
Q Consensus 148 rI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~il------t~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~ 221 (355)
T Consensus 71 rV~Dp~kA~~~V~n~~~~v~~~aetaLR~v~g~~~~D~~~~~~~~L~~~rd~I~~~l~~~l~e~~~~~--GI~V~~vrIk 148 (219)
T cd03402 71 RVVDTAKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVA--GVEVVEARIT 148 (219)
T ss_pred EECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC--CCEEEEEEEC
T ss_conf 98488999874265999999999999999862367410101345551489999999999987776630--9799999972
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 156257899999999887889
Q gi|254780958|r 222 DASPPREVADAFDEVQRAEQD 242 (355)
Q Consensus 222 ~v~~P~~v~~A~~~v~~A~qe 242 (355)
T Consensus 149 ~i~~p~eIa~AM~~r~qAea~ 169 (219)
T cd03402 149 HLAYAPEIAQAMLQRQQASAI 169 (219)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 535989999999999999999