HHsearch alignment for GI: 254780958 and conserved domain: cd03405
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=0 Score=378.85 Aligned_cols=238 Identities=21% Similarity=0.259 Sum_probs=219.5
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEE
Q ss_conf 21453889999987533113555898366457532368722048999826722114766503660684188763443422
Q gi|254780958|r 69 IYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYV 148 (355)
Q Consensus 69 ~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yr 148 (355)
T Consensus 1 ~y~V~~ge~gVv~rfGk~~~~~~~pGlhf~~P~i~~v~~v~~r~~~~~~~---------~~~~lT~D~~~v~vd~~V~yr 71 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSD---------PQRVLTKDKKRLIVDAYAKWR 71 (242)
T ss_pred CEEECCCEEEEEEECCCCCCCCCCCCCEEECCCCEEEEEEEEEEEEECCC---------CEEEEECCCCEEEEEEEEEEE
T ss_conf 98989977999986696768657998179837560999992289985178---------625796598389998999999
Q ss_pred ECCHHHHHHHHCCHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC
Q ss_conf 15887853201298999----98887776777753010000015546788777999988863123461798753430156
Q gi|254780958|r 149 VTDPRLYLFNLENPGET----LKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDAS 224 (355)
Q Consensus 149 I~Dp~~~~~~v~~~~~~----l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~ 224 (355)
T Consensus 72 I~d~~~~~~~v~~~~~~~~~~i~~~~~salR~vig~~~~~~vl~~~R~~i~~~i~~~l~~~l~~~--GI~V~~V~I~~i~ 149 (242)
T cd03405 72 ITDPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKEL--GIEVVDVRIKRID 149 (242)
T ss_pred ECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHC--CCEEEEEEEEECC
T ss_conf 87899999985684667999999999999999963674888742269999999999999988765--9569999986469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 25789999999988788999999999999998776889999999977789999999972322999999999998699999
Q gi|254780958|r 225 PPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLL 304 (355)
Q Consensus 225 ~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt 304 (355)
T Consensus 150 ~P~~v~~Ai~~~~~aere~~a~~~~ae~~~ea~~~~a~a~~~~~~~~AeA~~~a~~~~A~geAea~~~~~~a~~~~pe~~ 229 (242)
T cd03405 150 LPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFY 229 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 99899999999999999999999998999998998988999999987788999999986789999999999986596899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999983
Q gi|254780958|r 305 RKRIYLETMEGIL 317 (355)
Q Consensus 305 ~~rlylet~~~vl 317 (355)
T Consensus 230 ~~~~~lea~k~~~ 242 (242)
T cd03405 230 AFYRSLEAYRNSF 242 (242)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999529