HHsearch alignment for GI: 254780958 and conserved domain: cd03405

>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00  E-value=0  Score=378.85  Aligned_cols=238  Identities=21%  Similarity=0.259  Sum_probs=219.5

Q ss_pred             HHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEE
Q ss_conf             21453889999987533113555898366457532368722048999826722114766503660684188763443422
Q gi|254780958|r   69 IYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYV  148 (355)
Q Consensus        69 ~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yr  148 (355)
T Consensus         1 ~y~V~~ge~gVv~rfGk~~~~~~~pGlhf~~P~i~~v~~v~~r~~~~~~~---------~~~~lT~D~~~v~vd~~V~yr   71 (242)
T cd03405           1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSD---------PQRVLTKDKKRLIVDAYAKWR   71 (242)
T ss_pred             CEEECCCEEEEEEECCCCCCCCCCCCCEEECCCCEEEEEEEEEEEEECCC---------CEEEEECCCCEEEEEEEEEEE
T ss_conf             98989977999986696768657998179837560999992289985178---------625796598389998999999


Q ss_pred             ECCHHHHHHHHCCHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC
Q ss_conf             15887853201298999----98887776777753010000015546788777999988863123461798753430156
Q gi|254780958|r  149 VTDPRLYLFNLENPGET----LKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDAS  224 (355)
Q Consensus       149 I~Dp~~~~~~v~~~~~~----l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~  224 (355)
T Consensus        72 I~d~~~~~~~v~~~~~~~~~~i~~~~~salR~vig~~~~~~vl~~~R~~i~~~i~~~l~~~l~~~--GI~V~~V~I~~i~  149 (242)
T cd03405          72 ITDPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKEL--GIEVVDVRIKRID  149 (242)
T ss_pred             ECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHC--CCEEEEEEEEECC
T ss_conf             87899999985684667999999999999999963674888742269999999999999988765--9569999986469


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf             25789999999988788999999999999998776889999999977789999999972322999999999998699999
Q gi|254780958|r  225 PPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLL  304 (355)
Q Consensus       225 ~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt  304 (355)
T Consensus       150 ~P~~v~~Ai~~~~~aere~~a~~~~ae~~~ea~~~~a~a~~~~~~~~AeA~~~a~~~~A~geAea~~~~~~a~~~~pe~~  229 (242)
T cd03405         150 LPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFY  229 (242)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf             99899999999999999999999998999998998988999999987788999999986789999999999986596899


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999999999983
Q gi|254780958|r  305 RKRIYLETMEGIL  317 (355)
Q Consensus       305 ~~rlylet~~~vl  317 (355)
T Consensus       230 ~~~~~lea~k~~~  242 (242)
T cd03405         230 AFYRSLEAYRNSF  242 (242)
T ss_pred             HHHHHHHHHHHHC
T ss_conf             9999999999529