HHsearch alignment for GI: 254780958 and conserved domain: cd03407
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.11 E-value=0.025 Score=34.75 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=52.7
Q ss_pred EEEECCHHHHHHHHCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEECC
Q ss_conf 4221588785320129899998887-77677775301000001554678877799998886-312346179875343015
Q gi|254780958|r 146 LYVVTDPRLYLFNLENPGETLKQVS-ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT-MDYYKSGILINTISIEDA 223 (355)
Q Consensus 146 ~yrI~Dp~~~~~~v~~~~~~l~~~~-esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~-l~~y~~GI~V~~V~i~~v 223 (355)
T Consensus 75 ~y~v~~~~~~i~~~--~~s~lR~vIG~~~Ld~vl~~R--~~I----~~~v~~~l~~~~~~~GI~V~--~V~I~di~pP~~ 144 (262)
T cd03407 75 FYKLGNPEEQIQSY--VFDVLRARIPKLTLDELFEQK--DEI----AKAVEEELREAMSRYGFEIV--ATLITDIDPDAE 144 (262)
T ss_pred HHHHCCHHHHHHHH--HHHHHHHHHCCCCHHHHHHCH--HHH----HHHHHHHHHHHHHHHCCEEE--EEEEEECCCCHH
T ss_conf 98605899999999--999999896667378887461--879----99999999999986087369--999852599999
Q ss_pred CHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 625--789999999----98878899999999999999877688999999997778999999
Q gi|254780958|r 224 SPP--REVADAFDE----VQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRI 279 (355)
Q Consensus 224 ~~P--~~v~~A~~~----v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~ 279 (355)
T Consensus 145 V~~Am~~~~~Aer~r~a~i~~Ae~~~~~~i~~Aeg~ae~~~l~aeg~a~~~~~~A~g~~~~~ 206 (262)
T cd03407 145 VKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESI 206 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999989999977988689999999999999999999878789999