Query gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 355
No_of_seqs 241 out of 2352
Neff 7.0
Searched_HMMs 39220
Date Mon May 30 03:30:00 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780958.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10930 FtsH protease regulat 100.0 0 0 765.9 32.5 338 1-348 1-366 (419)
2 TIGR01933 hflK HflK protein; I 100.0 0 0 581.1 16.8 269 69-338 1-285 (285)
3 cd03404 Band_7_HflK Band_7_Hfl 100.0 0 0 446.1 25.3 262 55-317 1-266 (266)
4 PRK11029 FtsH protease regulat 100.0 0 0 407.5 23.5 273 53-338 4-329 (334)
5 cd03407 Band_7_4 A subgroup of 100.0 0 0 381.5 23.0 241 74-328 1-249 (262)
6 cd03405 Band_7_HflC Band_7_Hfl 100.0 0 0 378.9 22.7 238 69-317 1-242 (242)
7 COG0330 HflC Membrane protease 100.0 0 0 326.3 24.2 276 53-340 5-288 (291)
8 cd03403 Band_7_stomatin_like B 100.0 3.7E-41 1.4E-45 293.2 18.8 210 72-325 1-212 (215)
9 TIGR01932 hflC HflC protein; I 100.0 2.9E-39 7.4E-44 280.5 14.9 270 53-336 5-345 (345)
10 cd03402 Band_7_2 A subgroup of 100.0 3.5E-35 8.9E-40 253.4 19.1 163 68-242 1-169 (219)
11 cd03401 Band_7_prohibitin Band 100.0 8.5E-36 2.2E-40 257.5 12.8 188 68-288 1-194 (196)
12 KOG2620 consensus 100.0 2.2E-34 5.7E-39 248.1 13.4 248 70-330 10-276 (301)
13 KOG2621 consensus 100.0 1.6E-30 4E-35 222.5 18.3 210 64-319 50-263 (288)
14 smart00244 PHB prohibitin homo 100.0 9.9E-32 2.5E-36 230.4 9.4 158 67-236 1-159 (160)
15 pfam01145 Band_7 SPFH domain / 100.0 4.4E-29 1.1E-33 212.8 11.9 163 70-244 1-166 (177)
16 KOG3090 consensus 99.9 1.4E-26 3.6E-31 196.1 12.6 245 51-328 20-273 (290)
17 KOG3083 consensus 99.9 8.1E-22 2.1E-26 164.5 6.9 237 62-337 20-262 (271)
18 cd03406 Band_7_3 A subgroup of 99.8 8.1E-19 2.1E-23 144.5 16.4 190 65-266 1-205 (280)
19 KOG2962 consensus 99.7 1.9E-16 4.9E-21 128.7 16.5 269 54-327 8-299 (322)
20 cd02106 Band_7 The band 7 doma 99.6 2.4E-15 6E-20 121.4 10.7 107 127-236 12-120 (121)
21 COG2268 Uncharacterized protei 99.6 1.8E-13 4.7E-18 108.9 15.3 158 56-226 19-197 (548)
22 cd03400 Band_7_1 A subgroup of 99.5 3.4E-14 8.6E-19 113.8 8.8 105 130-236 15-123 (124)
23 KOG2668 consensus 99.4 1.5E-10 3.7E-15 89.5 18.6 246 68-328 1-384 (428)
24 cd03399 Band_7_flotillin Band_ 99.3 1.4E-11 3.6E-16 96.3 9.6 100 131-233 16-124 (128)
25 cd03408 Band_7_5 A subgroup of 99.1 2.6E-10 6.7E-15 87.9 7.4 161 68-235 15-205 (207)
26 pfam12221 HflK_N Bacterial mem 98.5 1.2E-07 3.1E-12 70.2 4.9 45 1-48 1-45 (46)
27 PRK10930 FtsH protease regulat 98.4 1E-05 2.6E-10 57.4 12.4 243 2-279 15-319 (419)
28 COG4260 Membrane protease subu 98.3 5.5E-06 1.4E-10 59.1 8.2 134 99-237 90-234 (345)
29 cd03405 Band_7_HflC Band_7_Hfl 97.9 0.00051 1.3E-08 46.0 12.5 147 146-300 79-241 (242)
30 cd03404 Band_7_HflK Band_7_Hfl 97.6 0.0073 1.9E-07 38.3 16.0 144 156-315 95-248 (266)
31 PRK11029 FtsH protease regulat 97.6 0.00087 2.2E-08 44.5 9.3 45 244-288 225-269 (334)
32 COG1580 FliL Flagellar basal b 97.3 0.016 4.2E-07 36.0 12.8 79 138-224 78-157 (159)
33 PRK01558 V-type ATP synthase s 97.2 0.0017 4.2E-08 42.6 6.9 47 236-282 17-63 (198)
34 cd03407 Band_7_4 A subgroup of 97.1 0.025 6.4E-07 34.7 12.6 124 146-279 75-206 (262)
35 PRK01005 V-type ATP synthase s 97.1 0.024 6.1E-07 34.9 12.0 80 236-316 22-122 (208)
36 PRK01005 V-type ATP synthase s 97.0 0.004 1E-07 40.1 7.5 50 246-295 21-70 (208)
37 PRK01558 V-type ATP synthase s 96.9 0.01 2.7E-07 37.3 8.6 46 247-292 17-62 (198)
38 TIGR01932 hflC HflC protein; I 96.8 0.0048 1.2E-07 39.5 6.2 87 213-300 224-322 (345)
39 PRK02292 V-type ATP synthase s 96.3 0.095 2.4E-06 30.9 11.0 52 237-288 12-71 (187)
40 PRK05696 fliL flagellar basal 96.2 0.077 2E-06 31.5 9.4 78 139-223 87-165 (168)
41 PRK06231 F0F1 ATP synthase sub 96.0 0.11 2.8E-06 30.5 9.7 20 254-273 131-150 (201)
42 pfam05103 DivIVA DivIVA protei 95.5 0.21 5.3E-06 28.6 11.8 44 236-279 69-112 (131)
43 PRK13428 F0F1 ATP synthase sub 95.4 0.2 5.1E-06 28.8 9.0 29 242-270 57-85 (445)
44 PRK13428 F0F1 ATP synthase sub 94.7 0.34 8.7E-06 27.2 13.0 29 253-281 57-85 (445)
45 COG0330 HflC Membrane protease 94.7 0.34 8.8E-06 27.2 9.4 123 156-289 94-224 (291)
46 KOG2668 consensus 94.7 0.35 9E-06 27.1 9.1 66 231-296 290-360 (428)
47 PRK03963 V-type ATP synthase s 94.5 0.39 9.9E-06 26.8 11.0 31 237-267 13-43 (198)
48 KOG2620 consensus 94.3 0.42 1.1E-05 26.6 8.6 49 238-286 179-227 (301)
49 COG2811 NtpF Archaeal/vacuolar 94.3 0.43 1.1E-05 26.5 9.4 43 232-274 8-50 (108)
50 TIGR01933 hflK HflK protein; I 94.1 0.13 3.4E-06 29.9 5.4 125 146-277 98-244 (285)
51 pfam12127 YdfA_immunity SigmaW 94.0 0.48 1.2E-05 26.2 14.7 101 177-288 181-282 (321)
52 CHL00019 atpF ATP synthase CF0 94.0 0.49 1.2E-05 26.2 12.6 27 176-202 42-68 (184)
53 pfam05103 DivIVA DivIVA protei 93.9 0.51 1.3E-05 26.1 10.7 53 243-295 65-117 (131)
54 PRK01194 V-type ATP synthase s 93.9 0.51 1.3E-05 26.0 10.7 37 238-274 13-49 (185)
55 TIGR02926 AhaH ATP synthase ar 92.5 0.82 2.1E-05 24.7 7.5 61 235-296 3-69 (85)
56 pfam03748 FliL Flagellar basal 92.0 0.95 2.4E-05 24.2 9.6 75 138-223 67-142 (145)
57 TIGR03321 alt_F1F0_F0_B altern 92.0 0.96 2.4E-05 24.2 9.7 28 247-274 81-108 (246)
58 PRK13460 F0F1 ATP synthase sub 91.2 1.1 2.9E-05 23.7 9.2 22 253-274 98-119 (173)
59 PRK13455 F0F1 ATP synthase sub 90.4 1.3 3.4E-05 23.2 12.9 34 241-274 82-115 (184)
60 PRK12785 fliL flagellar basal 90.0 1.4 3.7E-05 23.0 10.1 74 141-223 90-164 (167)
61 COG1390 NtpE Archaeal/vacuolar 89.8 1.5 3.8E-05 22.9 11.6 52 238-289 14-73 (194)
62 PRK13665 hypothetical protein; 89.8 1.5 3.8E-05 22.9 11.9 71 177-255 182-253 (327)
63 CHL00118 atpG ATP synthase CF0 89.2 1.6 4.2E-05 22.7 13.2 46 243-288 79-128 (156)
64 pfam06635 NolV Nodulation prot 89.2 1.7 4.2E-05 22.6 12.0 82 228-319 28-109 (207)
65 PRK07021 fliL flagellar basal 88.2 1.9 5E-05 22.2 12.5 80 137-223 76-156 (159)
66 PRK09173 F0F1 ATP synthase sub 86.6 2.4 6.1E-05 21.6 12.9 39 239-277 55-93 (159)
67 pfam06188 HrpE HrpE protein. T 85.5 2.7 6.8E-05 21.2 10.4 33 254-286 32-64 (191)
68 CHL00167 consensus 85.3 2.7 7E-05 21.2 11.9 26 176-201 44-69 (182)
69 PRK08455 fliL flagellar basal 85.2 2.8 7E-05 21.2 8.2 75 138-223 102-177 (180)
70 PRK13454 F0F1 ATP synthase sub 84.1 3.1 7.9E-05 20.8 12.3 50 238-287 83-136 (181)
71 PRK09098 type III secretion sy 83.6 3.2 8.3E-05 20.7 12.2 29 239-267 48-76 (229)
72 PRK13453 F0F1 ATP synthase sub 83.5 3.3 8.3E-05 20.7 12.8 37 238-274 81-121 (173)
73 PRK07352 F0F1 ATP synthase sub 83.1 3.4 8.6E-05 20.6 12.8 19 182-200 43-61 (174)
74 pfam11978 MVP_shoulder Shoulde 81.0 4 0.0001 20.1 6.2 91 133-225 13-116 (118)
75 PRK08404 V-type ATP synthase s 81.0 4 0.0001 20.1 8.6 65 231-296 6-76 (106)
76 PRK00106 hypothetical protein; 80.1 4.3 0.00011 19.9 12.5 10 334-343 230-239 (535)
77 PRK13461 F0F1 ATP synthase sub 78.6 4.8 0.00012 19.6 12.9 25 250-274 84-108 (159)
78 TIGR01144 ATP_synt_b ATP synth 77.4 5.2 0.00013 19.3 9.0 16 271-286 84-99 (147)
79 PRK07353 F0F1 ATP synthase sub 76.2 5.6 0.00014 19.1 13.3 45 242-286 61-109 (140)
80 PRK06654 fliL flagellar basal 75.1 6 0.00015 18.9 9.1 74 138-224 99-173 (177)
81 PRK08475 F0F1 ATP synthase sub 73.3 6.6 0.00017 18.7 13.1 23 178-200 44-66 (170)
82 COG0711 AtpF F0F1-type ATP syn 71.2 7.3 0.00019 18.3 9.6 41 245-285 65-109 (161)
83 PRK05697 flagellar basal body- 70.8 7.5 0.00019 18.3 6.3 77 141-223 54-132 (135)
84 PRK09174 F0F1 ATP synthase sub 70.2 7.7 0.0002 18.2 9.7 50 237-286 104-157 (204)
85 COG1080 PtsA Phosphoenolpyruva 69.4 8 0.0002 18.1 4.8 34 321-354 328-365 (574)
86 PRK08476 F0F1 ATP synthase sub 69.2 8.1 0.00021 18.1 13.0 24 240-263 61-84 (141)
87 pfam00430 ATP-synt_B ATP synth 68.6 8.3 0.00021 18.0 13.2 45 242-286 55-103 (132)
88 TIGR01107 Na_K_ATPase_bet Na+/ 68.0 8.5 0.00022 17.9 4.1 53 84-172 71-123 (317)
89 TIGR01147 V_ATP_synt_G V-type 67.7 8.7 0.00022 17.9 7.2 44 233-279 9-52 (114)
90 PRK05759 F0F1 ATP synthase sub 63.8 10 0.00026 17.4 10.2 31 245-275 78-108 (156)
91 TIGR01849 PHB_depoly_PhaZ poly 63.3 10 0.00026 17.4 3.6 51 275-326 280-335 (414)
92 pfam03179 V-ATPase_G Vacuolar 60.9 11 0.00029 17.0 10.0 39 233-271 6-44 (105)
93 PRK06328 type III secretion sy 57.3 13 0.00034 16.6 11.7 26 236-261 35-60 (223)
94 COG4864 Uncharacterized protei 56.2 14 0.00035 16.5 9.9 105 173-288 177-282 (328)
95 PRK07718 fliL flagellar basal 55.2 14 0.00036 16.4 9.7 78 135-223 61-139 (142)
96 PRK06007 fliF flagellar MS-rin 54.7 15 0.00037 16.4 3.2 28 29-56 4-31 (540)
97 COG3599 DivIVA Cell division i 54.5 15 0.00037 16.4 10.8 36 237-272 84-119 (212)
98 KOG1772 consensus 53.7 15 0.00038 16.3 6.0 39 233-271 8-46 (108)
99 TIGR01369 CPSaseII_lrg carbamo 52.9 15 0.00038 16.3 3.0 12 213-224 674-685 (1089)
100 TIGR02499 HrpE_YscL_not type I 51.4 16 0.00042 16.0 12.8 33 237-269 13-45 (183)
101 pfam11696 DUF3292 Protein of u 49.7 10 0.00026 17.4 1.7 11 30-40 52-62 (641)
102 TIGR01006 polys_exp_MPA1 polys 49.4 15 0.00038 16.3 2.6 41 28-77 12-52 (235)
103 TIGR00263 trpB tryptophan synt 49.3 9.7 0.00025 17.5 1.6 46 298-346 141-206 (412)
104 KOG4040 consensus 48.3 18 0.00046 15.7 4.3 63 6-71 85-149 (186)
105 TIGR01608 citD citrate lyase a 46.7 19 0.00049 15.6 5.0 49 187-244 34-82 (95)
106 PRK06937 type III secretion sy 46.5 19 0.00049 15.5 12.6 18 236-253 36-53 (204)
107 TIGR00034 aroFGH phospho-2-deh 46.0 19 0.00049 15.5 2.7 14 73-86 213-226 (348)
108 pfam05568 ASFV_J13L African sw 43.3 19 0.00049 15.6 2.3 19 51-69 37-55 (189)
109 pfam06850 PHB_depo_C PHB de-po 43.2 22 0.00055 15.2 4.6 33 287-320 81-113 (203)
110 TIGR01016 sucCoAbeta succinyl- 38.5 22 0.00057 15.1 2.0 85 129-220 200-318 (389)
111 pfam00287 Na_K-ATPase Sodium / 35.4 29 0.00073 14.4 3.8 26 69-101 63-88 (289)
112 PRK00409 recombination and DNA 34.4 30 0.00076 14.3 11.5 27 264-290 561-587 (780)
113 pfam05279 Asp-B-Hydro_N Aspart 33.7 30 0.00077 14.2 3.1 39 46-86 5-48 (232)
114 COG4499 Predicted membrane pro 30.9 34 0.00086 13.9 3.5 39 50-88 223-261 (434)
115 TIGR02739 TraF type-F conjugat 30.1 35 0.00088 13.8 4.6 56 168-226 148-204 (270)
116 PHA00430 tail fiber protein 29.9 35 0.00089 13.8 6.4 23 233-255 165-187 (568)
117 TIGR02042 sir sulfite reductas 28.8 35 0.00089 13.8 1.8 30 195-224 384-416 (583)
118 TIGR00435 cysS cysteinyl-tRNA 27.8 28 0.00071 14.5 1.1 21 310-330 632-653 (660)
119 TIGR00970 leuA_yeast 2-isoprop 27.8 15 0.00038 16.3 -0.3 19 186-204 102-120 (615)
120 pfam05821 NDUF_B8 NADH-ubiquin 27.6 38 0.00098 13.6 4.6 38 6-46 80-117 (179)
121 TIGR00844 c_cpa1 sodium/hydrog 26.5 35 0.00088 13.9 1.4 28 61-89 413-445 (923)
122 pfam09680 Tiny_TM_bacill Prote 26.2 40 0.001 13.4 2.5 20 50-69 5-24 (26)
123 TIGR00769 AAA ADP/ATP carrier 24.4 20 0.00052 15.4 -0.1 44 297-342 384-427 (491)
124 PRK07764 DNA polymerase III su 24.0 43 0.0011 13.2 1.5 33 234-266 271-304 (775)
125 COG3944 Capsular polysaccharid 23.2 46 0.0012 13.0 2.4 27 210-236 112-140 (226)
126 PRK06855 aminotransferase; Val 22.8 47 0.0012 13.0 2.1 20 212-231 249-268 (433)
127 KOG2457 consensus 22.8 47 0.0012 13.0 3.0 24 62-85 171-198 (555)
128 TIGR01667 YCCS_YHJK integral m 22.2 43 0.0011 13.3 1.2 74 27-100 370-463 (724)
129 pfam10484 MRP-S23 Mitochondria 22.1 48 0.0012 12.9 3.2 34 286-319 36-69 (74)
130 pfam12072 DUF3552 Domain of un 21.6 49 0.0013 12.8 6.9 10 309-318 190-199 (201)
131 TIGR02876 spore_yqfD sporulati 21.5 50 0.0013 12.8 2.2 49 49-100 84-142 (406)
132 PRK09645 RNA polymerase sigma 21.4 50 0.0013 12.8 2.2 26 293-318 138-165 (171)
133 TIGR00814 stp serine transport 21.2 50 0.0013 12.8 3.1 23 74-97 67-90 (419)
134 pfam06637 PV-1 PV-1 protein (P 20.6 52 0.0013 12.7 7.0 28 49-76 32-59 (442)
135 pfam06373 CART Cocaine and amp 20.5 52 0.0013 12.7 1.9 26 295-320 33-58 (110)
136 PRK07193 fliF flagellar MS-rin 20.3 53 0.0013 12.6 2.5 17 30-46 6-22 (550)
137 KOG3927 consensus 20.1 53 0.0014 12.6 3.0 15 88-102 82-96 (300)
138 PRK11118 hypothetical protein; 20.1 39 0.00099 13.5 0.6 13 90-102 31-43 (100)
No 1
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=100.00 E-value=0 Score=765.89 Aligned_cols=338 Identities=32% Similarity=0.504 Sum_probs=308.5
Q ss_pred CCCCCCC------CCCCCCCCC-----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC-----------------CCCH
Q ss_conf 9988899------999778777-----77889999988998999999998721168877-----------------6437
Q gi|254780958|r 1 MSYDKNN------SDWRPTRLS-----GSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFK-----------------SYGS 52 (355)
Q Consensus 1 M~wn~~~------~p~~~~~~~-----~~~~~~~~~~p~dlde~~~~~~~~~~~~~~~~-----------------~~~~ 52 (355)
|+||+|+ ||||..++. +++++|.+++||||||+||+++++|+++++++ ++.+
T Consensus 1 MaWNePg~ng~~kDPWG~~~~~~~~~g~~~~gg~~qgPPDLDE~~rkl~~kl~~l~gg~g~g~gggg~~~~~~~~~~~~~ 80 (419)
T PRK10930 1 MAWNQPGNNGQDRDPWGSSKPGGNSGGNGNKGGRDQGPPDLDDIFRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRV 80 (419)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99888999888899988899888877777877777999999999999999861013789999999988888887754118
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEE
Q ss_conf 99999999999999742145388999998753311355589836645753236872204899982672211476650366
Q gi|254780958|r 53 VYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLIL 132 (355)
Q Consensus 53 i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mL 132 (355)
+.+++++++++|++||||+|+|+|+|||+|||+|+++ .+|||||+||||++|.+|+|+..+ ....+++||
T Consensus 81 i~iv~~~lv~~Wl~sGfY~V~~~E~gVVlRFGky~~t-~~PGLhw~p~pIe~V~~VnV~~vR---------~~~~~~lML 150 (419)
T PRK10930 81 VTIAAAAVVIIWAASGFYTIKEAERGVVTRFGKFSHL-VEPGLNWKPTFIDEVKPVNVEAVR---------ELAASGVML 150 (419)
T ss_pred HHHHHHHHHHHHHHCEEEEECCCCEEEEEECCCCCCC-CCCCCCCCCCCCCEEEEECCEECC---------CCCCCCCEE
T ss_conf 9999999999999822599776513787861451102-089877536775549984452102---------456566025
Q ss_pred ECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 06841887634434221588785320129899998887776777753010000015546788777999988863123461
Q gi|254780958|r 133 TGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSG 212 (355)
Q Consensus 133 T~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~G 212 (355)
|+|+|+|+|+++|||+|.||.+|+|++.||+.+|+++++||||+|||++++|++||++|++|+.++++.||+.||.|++|
T Consensus 151 T~DeNIVdV~~~VQYrI~dp~~yLFnv~dPe~tlr~aaESAmReVVG~~~~d~vLT~gR~~Ia~~v~~~lQ~~Ld~Y~~G 230 (419)
T PRK10930 151 TSDENVVRVEMNVQYRVTDPEKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQRELEETIRPYDMG 230 (419)
T ss_pred ECCCCEEEEEEEEEEEECCHHHHEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 07887698778999995685781364578768999999999999976364899964888999999999999999850899
Q ss_pred EEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79875343015625789999999988788999999999999998776889999999977789999999972322999999
Q gi|254780958|r 213 ILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLS 292 (355)
Q Consensus 213 I~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~ 292 (355)
|.|.+|+|++++||++|++||+||++|+||+||+||||++|+|+++|+|+|+|++|+++|+|||+++|++|+|||+||.+
T Consensus 231 I~I~~V~lq~a~PP~~V~~AF~DV~~ArqD~er~ineA~aYaN~iiP~ArG~A~rii~eAeaYk~~vV~~A~Gea~RF~~ 310 (419)
T PRK10930 231 ITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAK 310 (419)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999884678998889999999999998899999999999975351321389999999999999999964535999999
Q ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECHHHHHHCCCCCC
Q ss_conf 99999869999999999999999837995999967998475403479720245655
Q gi|254780958|r 293 IYGQYVNAPTLLRKRIYLETMEGILKKAKKVIIDKKQSVMPYLPLNEAFSRIQTKR 348 (355)
Q Consensus 293 i~~~Y~~ap~vt~~rlylet~~~vl~~~~k~ii~~~~~~~~yLpl~~~~~~~~~~~ 348 (355)
+|+||++||+|||+||||||||+||++++|||||+++++|+|||||+|++++..+.
T Consensus 311 ll~eY~kAP~VTR~RLYLEtme~Vls~~~KVivD~~g~n~~yLPLDkl~~~~~~~~ 366 (419)
T PRK10930 311 LLPEYKAAPEITRERLYIETMEKVLGNTRKVLVNDKGGNLMVLPLDQMLKGGNAPA 366 (419)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEECCHHHHHHCCCCCC
T ss_conf 99999868699999999999999973698799977998047533799974678875
No 2
>TIGR01933 hflK HflK protein; InterPro: IPR010201 The accumulation of abnormal membrane proteins is something which must be avoided in order to maintain cell viability. In Escherichia coli, the membrane-bound, ATP-dependent protease FtsH plays a central role in the degradation of these abnormal proteins . Known substrates of this protease include several lambda bacteriophage proteins, the heat-shock transcription factor sigma-32, and the unassembled form of the membrane protein SecY. While FtsH is active as a protease on its own, in vivo it forms a complex with a membrane-bound HflKC heterodimer. HflKC has a generally inhibitory effect on the protease activity of FtsH, though the mechanism of this inhibition is not known. The HflK and HflC polypeptides are paralogous, and often encoded by tandem genes within bacterial genomes. This entry represents the HflK subunit of the HflKC heterodimer.; GO: 0005515 protein binding, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=581.14 Aligned_cols=269 Identities=40% Similarity=0.671 Sum_probs=257.0
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC-CCEEEEEEEEE-EEEEECCCCCCC---------CCCCEEEEECCCE
Q ss_conf 214538899999875331135558983664575-32368722048-999826722114---------7665036606841
Q gi|254780958|r 69 IYIVHPDERAVELRFGKPKNDVFLPGLHMMFWP-IDQVEIVKVIE-RQQKIGGRSASV---------GSNSGLILTGDQN 137 (355)
Q Consensus 69 ~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~pp-i~~v~~v~v~~-~~~~~~~~~~~~---------~~~~~~mLT~D~n 137 (355)
||+|+|.|+|||+|||||++ +++|||||+||| |++|..|+|+. +..++||..... ...+|.|||+|+|
T Consensus 1 ~y~i~e~e~gVVlRfGk~~~-~v~PGL~~~~~fpi~~v~~VnV~~v~~~~FGF~~S~S~~~~~yv~~~~~~g~mLT~DeN 79 (285)
T TIGR01933 1 IYIIGEAERGVVLRFGKYHR-TVEPGLNWKPPFPIEEVYKVNVTAVRKIKFGFLISKSDIRENYVDELRKQGLMLTGDEN 79 (285)
T ss_pred CEECCCCCCCEEECCCCHHH-HHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEECCCC
T ss_conf 95426333604510331022-22477653366873651006468865543152236425567898877406731104466
Q ss_pred EEEEEEEEEEEECCHHHHHHHHCCHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 88763443422158878532012989--9998887776777753010000015546788777999988863123461798
Q gi|254780958|r 138 IVGLHFSVLYVVTDPRLYLFNLENPG--ETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILI 215 (355)
Q Consensus 138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~--~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V 215 (355)
+|.|.+.|||||.||.+|+|+|.+|+ .+|+++++||||++||+++|+++||++|..|..++++.|+..++.|++||.|
T Consensus 80 iV~V~~~VQY~I~DP~~ylf~V~~~~rr~sl~~at~Salr~~iG~~~~~~iLt~gR~~i~~~~~~~l~~~i~~Y~~Gi~v 159 (285)
T TIGR01933 80 IVNVELNVQYRITDPAKYLFSVENPERRDSLRQATDSALREVIGDSSMDSILTEGRSQIREDTKERLNEIIDNYDLGITV 159 (285)
T ss_pred EEEEEEEEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 78876566666536377513676842556999999999865406202678736671678899999999987420386379
Q ss_pred EEEEEECCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 753430156257-8999999998878899999999999999877688999999997778999999997232299999999
Q gi|254780958|r 216 NTISIEDASPPR-EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIY 294 (355)
Q Consensus 216 ~~V~i~~v~~P~-~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~ 294 (355)
++|+++++.||+ +|++||+||+.|+|+++|+|+||++|+|+++|+|+|+|++++.+|+||++++|++|+||++||.+||
T Consensus 160 ~~V~~q~A~PP~GeVk~AFdDvi~A~ed~~r~I~EA~~y~n~~~P~A~G~A~r~~~eA~gY~~~~i~~A~G~v~rF~~ll 239 (285)
T TIGR01933 160 VDVNLQSARPPEGEVKEAFDDVIAAREDEERYINEAEAYANEVVPKARGRAQRIIEEARGYKEERINRAKGDVARFTKLL 239 (285)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86541666887200167899999877889999999998760368742276577899997678998987632199999988
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECC-C-CEEEEECHH
Q ss_conf 9998699999999999999998379959999679-9-847540347
Q gi|254780958|r 295 GQYVNAPTLLRKRIYLETMEGILKKAKKVIIDKK-Q-SVMPYLPLN 338 (355)
Q Consensus 295 ~~Y~~ap~vt~~rlylet~~~vl~~~~k~ii~~~-~-~~~~yLpl~ 338 (355)
++|++||+|||+|||||||++||++++||+++++ + ++++||||+
T Consensus 240 ~eY~~AP~vTr~RLYlEtm~~vl~n~~kV~~~~~~~~~~L~~lp~~ 285 (285)
T TIGR01933 240 AEYKKAPDVTRERLYLETMEKVLSNTSKVLLDDKKGKNNLLYLPLD 285 (285)
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECCC
T ss_conf 9986253667865479999999704884587657777653200269
No 3
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=0 Score=446.10 Aligned_cols=262 Identities=45% Similarity=0.702 Sum_probs=240.3
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEE-EEEEEEEEEEEECC---CCCCCCCCCEE
Q ss_conf 999999999999742145388999998753311355589836645753236-87220489998267---22114766503
Q gi|254780958|r 55 IILLLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQV-EIVKVIERQQKIGG---RSASVGSNSGL 130 (355)
Q Consensus 55 ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v-~~v~v~~~~~~~~~---~~~~~~~~~~~ 130 (355)
+++++++++|+++|||+|++||+|||+|||++++ +.+|||||++||++++ ..++++........ ......+.++.
T Consensus 1 ii~~~~~~~~~~ss~~~V~~~e~~Vv~rfGk~~~-~~~pGlhf~iP~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (266)
T cd03404 1 LIAALLVILWLLSGFYIVQPGERGVVLRFGKYSR-TVEPGLHWKLPYPIEVVEVVPVFQLRSVGIPVRVGSVRSVPGESL 79 (266)
T ss_pred CCHHHHHHHHHHHEEEEECCCEEEEEEECCCCCC-CCCCCEEEEECCEEEEEEEEEEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf 9268999999996689988984899887698667-348976899477079999987789995157633444456652121
Q ss_pred EEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 66068418876344342215887853201298999988877767777530100000155467887779999888631234
Q gi|254780958|r 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYK 210 (355)
Q Consensus 131 mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~ 210 (355)
|||+|++.|+++++|+|||+||.+|+|++.|++..|++.++++||+++|+++++++|+++|++++.++++.+++.++.|+
T Consensus 80 ~lT~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~l~~~~~~~lR~~ig~~~lde~l~~~R~~i~~~i~~~l~~~~~~~~ 159 (266)
T cd03404 80 MLTGDENIVDVEFAVQYRISDPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYK 159 (266)
T ss_pred EECCCCCEEEEEEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 56168988999999999988689988862589999999999999999726606888643799999999999999873456
Q ss_pred CEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 61798753430156257899999999887889999999999999987768899999999777899999999723229999
Q gi|254780958|r 211 SGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRF 290 (355)
Q Consensus 211 ~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf 290 (355)
+||+|++|+|++++||+++.+||+++++|++++++.++||++++.+++++|+|+|++++.+|+||+++.+++|+|||++|
T Consensus 160 ~GI~v~~V~i~~i~~P~~v~~a~~~~~~A~~e~~~~~~~ae~~a~~~~~~A~~ea~~~~~~Aea~~~~~~~~aegeA~~~ 239 (266)
T cd03404 160 AGIEIVGVNLQDADPPEEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEEVIAEAQGEAARF 239 (266)
T ss_pred CCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86799999975269989999999999999999999999999999999999888999999999999999998724369999
Q ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHH
Q ss_conf 999999986999999999999999983
Q gi|254780958|r 291 LSIYGQYVNAPTLLRKRIYLETMEGIL 317 (355)
Q Consensus 291 ~~i~~~Y~~ap~vt~~rlylet~~~vl 317 (355)
..++++|+++|++++.|+||||||+||
T Consensus 240 ~~~~~ay~k~P~~~~~~~~l~~~~~~l 266 (266)
T cd03404 240 ESLLAEYKKAPDVTRERLYLETMEEVL 266 (266)
T ss_pred HHHHHHHHHCHHHHHHHHHHHHHHHHC
T ss_conf 999999986979999999999999859
No 4
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=100.00 E-value=0 Score=407.50 Aligned_cols=273 Identities=20% Similarity=0.313 Sum_probs=231.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC------CCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 9999999999999974214538899999875331135------5589836645753236872204899982672211476
Q gi|254780958|r 53 VYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKND------VFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGS 126 (355)
Q Consensus 53 i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~------v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~ 126 (355)
+++++++++++++++|||+|+++|+|||+|||+++++ +.+||||||+|||++|.++|.+.+.++...
T Consensus 4 ~ilviii~vlv~l~~s~yiV~e~e~aVVlrFGk~vr~~~~~~~v~ePGLhfkiPfI~~V~~~d~Ri~~~d~~~------- 76 (334)
T PRK11029 4 SVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQTMDNQA------- 76 (334)
T ss_pred HHHHHHHHHHHHHHHEEEEECCCEEEEEEECCCEECCCCCCCCCCCCCEEEECCCCCEEEECCCEEEEEECCC-------
T ss_conf 5999999999999856899757708999966955236677764358980587375418898122799760797-------
Q ss_pred CCEEEEECCCEEEEEEEEEEEEECCHHHHHHH-----HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 65036606841887634434221588785320-----1298999988877767777530100000155467887779999
Q gi|254780958|r 127 NSGLILTGDQNIVGLHFSVLYVVTDPRLYLFN-----LENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNL 201 (355)
Q Consensus 127 ~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~-----v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~ 201 (355)
..|+|+|++.|.||.+|+|||+||.+|++. +..++..|.+.++++||+++|+++++++++++|+.|+.++++.
T Consensus 77 --~~vlT~D~k~i~VD~~v~wrI~Dp~~fy~~~~~~~~~~a~~~l~~~~~s~lR~~ig~~~l~eiis~~R~~l~~~v~~~ 154 (334)
T PRK11029 77 --DRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDA 154 (334)
T ss_pred --CEEEECCCCEEEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHH
T ss_conf --268851784899855899997378998988544317789999999989999999732769888301088999999999
Q ss_pred HHHH---------------------------------------HCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8886---------------------------------------3123461798753430156257899999999887889
Q gi|254780958|r 202 IQKT---------------------------------------MDYYKSGILINTISIEDASPPREVADAFDEVQRAEQD 242 (355)
Q Consensus 202 lq~~---------------------------------------l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe 242 (355)
++.. ++.| ||+|++|+|++++||++|++|+.+.+.|+++
T Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~s~~~~--GIeVvdV~ikrid~P~~v~~av~~rM~aER~ 232 (334)
T PRK11029 155 LNSGSAGTEDEVATPAADDAIAEAAERVTAETKGKVPVINPNSMAAL--GIEVVDVRIKQINLPTEVSEAIYNRMRAERE 232 (334)
T ss_pred HHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCEEEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 74301332001011110023445566677775432211011101125--8389999987448988999999999999999
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999--99999999987768899999999777899999999723229999999999986999999999999999983799
Q gi|254780958|r 243 EDRF--VEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYLETMEGILKKA 320 (355)
Q Consensus 243 ~er~--i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~~ 320 (355)
+... ..|+++++.+|. |+++.++.+..|+||+++.+.+|+|||+++....++|.++|++++.++||||++++|++.
T Consensus 233 ~~A~~~raeG~~~a~~Ir--a~ad~e~~~i~AeA~r~a~~irgegdAea~~iya~Ay~kdpefy~f~rsLeay~~~l~~~ 310 (334)
T PRK11029 233 AVARRHRSQGQEEAEKLR--ATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSFSGN 310 (334)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999987899999989--888888899988899899999837889999999999733989999999999999995699
Q ss_pred CEE-EEECCCCEEEEECHH
Q ss_conf 599-996799847540347
Q gi|254780958|r 321 KKV-IIDKKQSVMPYLPLN 338 (355)
Q Consensus 321 ~k~-ii~~~~~~~~yLpl~ 338 (355)
+|+ |++.++..+.||.-+
T Consensus 311 ~~~lVl~~ds~f~~y~~~~ 329 (334)
T PRK11029 311 QDVMVLSPDSDFFRYMKTP 329 (334)
T ss_pred CCEEEECCCCHHHHHHCCC
T ss_conf 9589989881799850598
No 5
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=0 Score=381.49 Aligned_cols=241 Identities=21% Similarity=0.295 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEE-EEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEC--
Q ss_conf 889999987533113555898366457532368-72204899982672211476650366068418876344342215--
Q gi|254780958|r 74 PDERAVELRFGKPKNDVFLPGLHMMFWPIDQVE-IVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVT-- 150 (355)
Q Consensus 74 ~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~-~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~-- 150 (355)
++|+|||+|||||++ +++|||||++|||+++. +++++.+..++..+ ++|+|+++|.|+++|+|||+
T Consensus 1 Q~e~~VV~RfGky~~-~~~PGLhf~iP~id~v~~~~~~r~~~~~~~~~----------~~TkDn~~V~vd~~v~yrI~~~ 69 (262)
T cd03407 1 QSQVAIIERFGKFFK-VAWPGCHFVIPLVETVAGRLSLRVQQLDVRVE----------TKTKDNVFVTVVGQIQYRVSEE 69 (262)
T ss_pred CCEEEEEEECCCCCC-CCCCCEEEECCCEEEEEEEEEEEEEECCCCCE----------EECCCCCEEEEEEEEEEEEECC
T ss_conf 966799887787077-45997089817679999997207996267845----------6505786899999999999048
Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHH
Q ss_conf 88785320129899998887776777753010000015546788777999988863123461798753430156257899
Q gi|254780958|r 151 DPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVA 230 (355)
Q Consensus 151 Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~ 230 (355)
||.+|+|++.||+..+.+.++++||+++|++++|++|+ +|++|+.++++.|++.++.| ||.|++|+|++++||++|+
T Consensus 70 ~~~~a~y~v~~~~~~i~~~~~s~lR~vIG~~~Ld~vl~-~R~~I~~~v~~~l~~~~~~~--GI~V~~V~I~di~pP~~V~ 146 (262)
T cd03407 70 NATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFE-QKDEIAKAVEEELREAMSRY--GFEIVATLITDIDPDAEVK 146 (262)
T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHH-CHHHHHHHHHHHHHHHHHHH--CCEEEEEEEEECCCCHHHH
T ss_conf 58889986058999999999999998966673788874-61879999999999999860--8736999985259999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHCHHHHHHHH
Q ss_conf 999999887889999999999999987768899999999777899999999723229999999999--986999999999
Q gi|254780958|r 231 DAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQ--YVNAPTLLRKRI 308 (355)
Q Consensus 231 ~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~--Y~~ap~vt~~rl 308 (355)
+||++++.|++++++.+++||+|+++++++|+|+|++++.+|+||++++++.|+|++++|..++.+ +..++++++.+|
T Consensus 147 ~Am~~~~~Aer~r~a~i~~Ae~~~~~~i~~Aeg~ae~~~l~aeg~a~~~~~~A~g~~~~~~~~~~a~~~~~~~~~~~~~l 226 (262)
T cd03407 147 RAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLL 226 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 99999999999999999998999997798868999999999999999999987878999999999875227087999999
Q ss_pred ---HHHHHHHHHCCCCEEEEECC
Q ss_conf ---99999998379959999679
Q gi|254780958|r 309 ---YLETMEGILKKAKKVIIDKK 328 (355)
Q Consensus 309 ---ylet~~~vl~~~~k~ii~~~ 328 (355)
|||||+++++++++++++.+
T Consensus 227 ~~~Y~e~l~~~~~~~~~~v~~p~ 249 (262)
T cd03407 227 VNQYFDTLKAYGRSSSTVVFRPH 249 (262)
T ss_pred HHHHHHHHHHHHHCCCCEEEECC
T ss_conf 99999999999708997899569
No 6
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=100.00 E-value=0 Score=378.85 Aligned_cols=238 Identities=21% Similarity=0.259 Sum_probs=219.5
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEE
Q ss_conf 21453889999987533113555898366457532368722048999826722114766503660684188763443422
Q gi|254780958|r 69 IYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYV 148 (355)
Q Consensus 69 ~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yr 148 (355)
||+|++||+|||+|||++.+++.+|||||++||++++.+++++.+..+.+ ...|||+|+|+|+|+++|+||
T Consensus 1 ~y~V~~ge~gVv~rfGk~~~~~~~pGlhf~~P~i~~v~~v~~r~~~~~~~---------~~~~lT~D~~~v~vd~~V~yr 71 (242)
T cd03405 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPFIQQVKKFDKRILTLDSD---------PQRVLTKDKKRLIVDAYAKWR 71 (242)
T ss_pred CEEECCCEEEEEEECCCCCCCCCCCCCEEECCCCEEEEEEEEEEEEECCC---------CEEEEECCCCEEEEEEEEEEE
T ss_conf 98989977999986696768657998179837560999992289985178---------625796598389998999999
Q ss_pred ECCHHHHHHHHCCHHHH----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCC
Q ss_conf 15887853201298999----98887776777753010000015546788777999988863123461798753430156
Q gi|254780958|r 149 VTDPRLYLFNLENPGET----LKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDAS 224 (355)
Q Consensus 149 I~Dp~~~~~~v~~~~~~----l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~ 224 (355)
|+||.+|+|++.++... |.+.++++||+++|+++++++|+++|++|+.++++.|++.++.| ||+|.+|+|++++
T Consensus 72 I~d~~~~~~~v~~~~~~~~~~i~~~~~salR~vig~~~~~~vl~~~R~~i~~~i~~~l~~~l~~~--GI~V~~V~I~~i~ 149 (242)
T cd03405 72 ITDPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGERGELMEEIRRAVAEEAKEL--GIEVVDVRIKRID 149 (242)
T ss_pred ECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHC--CCEEEEEEEEECC
T ss_conf 87899999985684667999999999999999963674888742269999999999999988765--9569999986469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
Q ss_conf 25789999999988788999999999999998776889999999977789999999972322999999999998699999
Q gi|254780958|r 225 PPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLL 304 (355)
Q Consensus 225 ~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt 304 (355)
||+++++||.+.+.|+++++..+..|++++.....+|++++++.+..|+||+++.+++|+|||++|..++.+|.++|+++
T Consensus 150 ~P~~v~~Ai~~~~~aere~~a~~~~ae~~~ea~~~~a~a~~~~~~~~AeA~~~a~~~~A~geAea~~~~~~a~~~~pe~~ 229 (242)
T cd03405 150 LPEEVSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFY 229 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 99899999999999999999999998999998998988999999987788999999986789999999999986596899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999983
Q gi|254780958|r 305 RKRIYLETMEGIL 317 (355)
Q Consensus 305 ~~rlylet~~~vl 317 (355)
+.+.+||+|+.++
T Consensus 230 ~~~~~lea~k~~~ 242 (242)
T cd03405 230 AFYRSLEAYRNSF 242 (242)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999529
No 7
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=326.29 Aligned_cols=276 Identities=29% Similarity=0.420 Sum_probs=235.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEE----EEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 99999999999999742145388999998753311355589836645753236----87220489998267221147665
Q gi|254780958|r 53 VYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQV----EIVKVIERQQKIGGRSASVGSNS 128 (355)
Q Consensus 53 i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v----~~v~v~~~~~~~~~~~~~~~~~~ 128 (355)
+++++++++++++++++|+|+++++|+++|||++.+....|||||++||+..+ ..++.+.+.++.+ .+
T Consensus 5 ~~~~~l~~~~~~~~~~~~iv~~~~~~vv~r~G~~~~~~~~pGl~f~~P~~~~~~~~~~~~~~~~~~~d~~--------~~ 76 (291)
T COG0330 5 LIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVG--------PP 76 (291)
T ss_pred HHHHHHHHHHHHHHHEEEEECCCCEEEEEECCCEEEEECCCEEEEECCCCCHHEEEEEEEEEEEEEECCC--------CC
T ss_conf 1259999999999634699846855999982644565058817998787520001224542036884168--------86
Q ss_pred EEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 03660684188763443422158878532012989999888777677775301000001554678877799998886312
Q gi|254780958|r 129 GLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDY 208 (355)
Q Consensus 129 ~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~ 208 (355)
..|+|+|++.|.|+++|+|||+||..|++++.+++..+.+.++++||+++|++++++++++.+..|+..+++.|+..++.
T Consensus 77 ~~viT~D~~~V~vd~~v~~rv~d~~~~~~~v~~~~~~i~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~ 156 (291)
T COG0330 77 QEVITKDNVIVSVDAVVQYRVTDPQKAVYNVENAEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADP 156 (291)
T ss_pred CEEECCCCCEEEEEEEEEEEECCHHHHEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 13780579769999999999877377436726889999999999999997343188875065588999999999976125
Q ss_pred CCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34617987534301562578999999998878899999999999999877--6889999999977789999999972322
Q gi|254780958|r 209 YKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVL--GSARGEASHIRESSIAYKDRIIQEAQGE 286 (355)
Q Consensus 209 y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~--~~A~geA~~i~~~Aeay~~~~i~~A~ge 286 (355)
| ||.|++|++++++||+++..||++.+.|++++++.+.+|++++++.+ ++|+++|+.++++|++|+ +++++|+||
T Consensus 157 ~--Gi~V~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~ 233 (291)
T COG0330 157 W--GIKVVDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEAD 233 (291)
T ss_pred C--CCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 8--8189998887558999999999999999999999999978788876544577899999999989877-998751036
Q ss_pred -HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CEEEEECHHHH
Q ss_conf -9999999999986999999999999999983799599996799-84754034797
Q gi|254780958|r 287 -ADRFLSIYGQYVNAPTLLRKRIYLETMEGILKKAKKVIIDKKQ-SVMPYLPLNEA 340 (355)
Q Consensus 287 -a~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~~~k~ii~~~~-~~~~yLpl~~~ 340 (355)
+++|.+.+.+|.++|.++..|.|.++++....+.+|++++.++ +.- ++++...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~~-~~~~~~~ 288 (291)
T COG0330 234 AAKIIAAALREAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSAGGA-ILGLLEL 288 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH-HHHHHHH
T ss_conf 999998752011447899999999999987506897199966973044-5534432
No 8
>cd03403 Band_7_stomatin_like Band_7_stomatin_like: A subgroup of the band 7 domain of flotillin (reggie) like proteins similar to stomatin and podicin (two lipid raft-associated integral membrane proteins). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Stomatin is widely expressed and, highly expressed in red blood cells. It localizes predominantly to the plasma membrane and to intracellular vesicles of the endocytic pathway, where it is present in higher order homo-oligomeric complexes (of between 9 and 12 monomers). Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and, is implicated in trafficking of Glut1 glucose transporters. Prohibitin is a mitochondrial inner-membrane protein hypothesized to act as a chaperone for the stabilization of mitochondrial proteins. Podicin local
Probab=100.00 E-value=3.7e-41 Score=293.20 Aligned_cols=210 Identities=26% Similarity=0.392 Sum_probs=179.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEE-EEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEC
Q ss_conf 5388999998753311355589836645753236-872204899982672211476650366068418876344342215
Q gi|254780958|r 72 VHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQV-EIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVT 150 (355)
Q Consensus 72 V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v-~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~ 150 (355)
|++||+||++|||++++ +++|||||++||++++ .+++++.+.++++.++ ++|+|++.|.++++|+|||+
T Consensus 1 V~e~e~gVv~~fGk~~~-v~~pGlh~~~P~i~~v~~~vd~r~~~~~~~~~~---------~lT~D~~~v~v~~~v~yrI~ 70 (215)
T cd03403 1 VPQYERGVVERLGKYHR-TLGPGLHFIIPFIDRIAYKVDLREQVLDVPPQE---------VITKDNVTVRVDAVLYYRVV 70 (215)
T ss_pred CCCCEEEEEEECCCCCC-EECCCEEEEECCCEEEEEEEEEEEEEEECCCCE---------EECCCCCEEEEEEEEEEEEC
T ss_conf 99870899998897995-778964799377518999973069976078734---------46279978999999999957
Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHH
Q ss_conf 88785320129899998887776777753010000015546788777999988863123461798753430156257899
Q gi|254780958|r 151 DPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVA 230 (355)
Q Consensus 151 Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~ 230 (355)
||.+|+|++.+++..+...+++++|+++|+++++++++ +|++++.++++.++..++.| ||+|.+|+|++++||++++
T Consensus 71 dp~~~~~~v~~~~~~l~~~~~~~lR~~i~~~~~~~i~~-~R~~i~~~i~~~l~~~l~~~--Gi~v~~v~i~~i~~P~~v~ 147 (215)
T cd03403 71 DPVKAVYGVEDYRYAISQLAQTTLRSVIGKMELDELLS-EREEINAELVEILDEATDPW--GVKVERVEIKDIILPQEIQ 147 (215)
T ss_pred CHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEECCCCHHHH
T ss_conf 88999973289999999999999998853233899985-49999999999999872128--8599999997538999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 99999988788999999999999998776889999999977789999999972322999999999998699999999999
Q gi|254780958|r 231 DAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYL 310 (355)
Q Consensus 231 ~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlyl 310 (355)
+||++++.|++++++.+. +|+|++++.+..|+|+++..+.+|.++ .| ||
T Consensus 148 ~ai~~~~~Aer~~~a~i~-----------~Aege~~a~~~~aea~~~~~~~~~~~~-------------------~k-~l 196 (215)
T cd03403 148 EAMAKQAEAEREKRAKII-----------EAEGERQAAILLAEAAKQAAINPAALQ-------------------LR-EL 196 (215)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHCHHHHH-------------------HH-HH
T ss_conf 999999999999987899-----------949999999999999999603989999-------------------99-99
Q ss_pred HHHHHHHCCC-CEEEE
Q ss_conf 9999983799-59999
Q gi|254780958|r 311 ETMEGILKKA-KKVII 325 (355)
Q Consensus 311 et~~~vl~~~-~k~ii 325 (355)
|+++++.... +|+|+
T Consensus 197 ea~~~~a~~~~~~~i~ 212 (215)
T cd03403 197 ETLEEIAKEAASTVVF 212 (215)
T ss_pred HHHHHHHHCCCCEEEE
T ss_conf 9999998389977998
No 9
>TIGR01932 hflC HflC protein; InterPro: IPR010200 HflK and HflC are paralogs encoded by tandem genes in proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. ; GO: 0005515 protein binding, 0008233 peptidase activity, 0016021 integral to membrane.
Probab=100.00 E-value=2.9e-39 Score=280.53 Aligned_cols=270 Identities=22% Similarity=0.352 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC------CCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 9999999999999974214538899999875331135------5589836645753236872204899982672211476
Q gi|254780958|r 53 VYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKND------VFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGS 126 (355)
Q Consensus 53 i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~------v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~ 126 (355)
++++++++.++.+|.|||+|+|||+|+++||||+.++ ++.||||||+|+|++|.+++-+.++++-..+.
T Consensus 5 ~i~~iv~~~~~~l~~~~f~ikEGe~gI~~RFGki~~d~N~~~lvY~pGLh~K~Pfie~Vk~~~a~Iqt~Dg~~dr----- 79 (345)
T TIGR01932 5 VIVVIVLLTIVVLFQPFFIIKEGERGIILRFGKILKDDNDKVLVYEPGLHFKIPFIESVKIFDAKIQTMDGRPDR----- 79 (345)
T ss_pred EEHHHHHHHHHHHHCCEEEEECCCEEEEEECCEEEEECCCCCEEECCCCCEECCCCCCCCCCCCEEEEECCCCCC-----
T ss_conf 322889999999861201631484767654160687348853254687624357304421033000200678361-----
Q ss_pred CCEEEEE--CCCEEEEEEEEEEEEECCHHHHHHHHC--C---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH-------
Q ss_conf 6503660--684188763443422158878532012--9---8999988877767777530100000155467-------
Q gi|254780958|r 127 NSGLILT--GDQNIVGLHFSVLYVVTDPRLYLFNLE--N---PGETLKQVSESAMREVVGRRFAVDIFRSQRQ------- 192 (355)
Q Consensus 127 ~~~~mLT--~D~n~V~v~~~V~yrI~Dp~~~~~~v~--~---~~~~l~~~~esalR~vvg~~~~d~ilt~~R~------- 192 (355)
++| +|++.|-||.++.|||.|-.+||..+. + ++..|....+++||.+||++.+.+++++-|+
T Consensus 80 ----~~TGGkEKk~~~~DTy~~WrI~D~~~yYl~~Ggg~~~~Ae~li~~~~~~~lR~~I~~~~~~~Iv~~~~~~~vlPE~ 155 (345)
T TIGR01932 80 ----IVTGGKEKKDIIVDTYIRWRIEDFKKYYLSTGGGTISAAEVLIKRKIEDRLRSEIGKLELKEIVRSSRDINVLPES 155 (345)
T ss_pred ----CCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHCCCCCEEEECCCCEEECCCC
T ss_conf ----2257764422788265420156555762105886589999999873074442153306860022076540313577
Q ss_pred ----HH-HHHHHHHH----------------------------------------HHHHCCCCCEEEEEEEEEECCCHHH
Q ss_conf ----88-77799998----------------------------------------8863123461798753430156257
Q gi|254780958|r 193 ----QI-ALEVRNLI----------------------------------------QKTMDYYKSGILINTISIEDASPPR 227 (355)
Q Consensus 193 ----~i-~~~v~~~l----------------------------------------q~~l~~y~~GI~V~~V~i~~v~~P~ 227 (355)
++ ...++..+ ...|. +.||+|+||.|+.|.+|+
T Consensus 156 ~~S~~l~~~~~~~a~~~~~~~~tedevt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k--d~Gi~vVDV~ikkI~~~~ 233 (345)
T TIGR01932 156 NDSEQLDTLSIKLALNAEGKINTEDEVTYKAVIFKIAIKIEKGREILEKEILQIANNQLK--DLGIEVVDVRIKKINLSD 233 (345)
T ss_pred CCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH--HCCEEEEEEEEECCCCCH
T ss_conf 777501046787521455566751010027899999874332146787654303700053--289189999850313788
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCHHHH
Q ss_conf 899999999887889--9999999999999877688999999997778999999997232299999999-9998699999
Q gi|254780958|r 228 EVADAFDEVQRAEQD--EDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIY-GQYVNAPTLL 304 (355)
Q Consensus 228 ~v~~A~~~v~~A~qe--~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~-~~Y~~ap~vt 304 (355)
++.+++...+.|+.+ +++.++.+++.+.++.++|+-|..+++ |||++++.+.+++|||+. .+|| ++|.|+||..
T Consensus 234 e~~esi~nRm~~ER~~iA~~~RS~G~~~aee~~~~~~~Ev~~iL--seA~~~A~~ikgEgDA~A-AK~ysdAy~K~PEFy 310 (345)
T TIGR01932 234 ELSESIYNRMRSEREQIARKHRSQGEEKAEELRGKADYEVLKIL--SEAKRTARIIKGEGDAEA-AKIYSDAYGKDPEFY 310 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCHH
T ss_conf 89999999899999999998443666889999852527788788--998873534312576999-999998747895388
Q ss_pred HHHHHHHHHHHHHCC--CCEEEEE-CCCCEEEEEC
Q ss_conf 999999999998379--9599996-7998475403
Q gi|254780958|r 305 RKRIYLETMEGILKK--AKKVIID-KKQSVMPYLP 336 (355)
Q Consensus 305 ~~rlylet~~~vl~~--~~k~ii~-~~~~~~~yLp 336 (355)
.---=|++.+.+|++ .+-.|++ .++..+-||.
T Consensus 311 ~F~rSL~aYe~~f~~k~~d~~v~se~d~~FF~Ym~ 345 (345)
T TIGR01932 311 SFIRSLEAYEKSFKDKNQDLKVLSETDSDFFRYMY 345 (345)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHCCC
T ss_conf 99999999998626677606886088715652059
No 10
>cd03402 Band_7_2 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=3.5e-35 Score=253.40 Aligned_cols=163 Identities=20% Similarity=0.236 Sum_probs=144.9
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEE
Q ss_conf 42145388999998753311355589836645753236872204899982672211476650366068418876344342
Q gi|254780958|r 68 SIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLY 147 (355)
Q Consensus 68 g~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~y 147 (355)
|||+|+|+|.+|+++||+|++++.+|||||++||+++ .+++.+.+.++.+... ++|+|+|.|.|+++|+|
T Consensus 1 G~~iV~p~ea~Vv~~FGky~gti~~pGL~~~~Pf~~~-~~vd~R~~~~d~~~q~---------v~t~D~~~i~IdavV~w 70 (219)
T cd03402 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-KRVSLRVRNFESEKLK---------VNDANGNPIEIAAVIVW 70 (219)
T ss_pred CCEEECCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEE-EEEEEEEEEECCCCEE---------EECCCCCEEEEEEEEEE
T ss_conf 9389782655688733770575468982899626878-9973058975168657---------58489998999899999
Q ss_pred EECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCC------CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 2158878532012989999888777677775301000001------5546788777999988863123461798753430
Q gi|254780958|r 148 VVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIF------RSQRQQIALEVRNLIQKTMDYYKSGILINTISIE 221 (355)
Q Consensus 148 rI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~il------t~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~ 221 (355)
||.||.+++|++.|++..+...++++||+++|++++|+.+ .++|++|+..+++.+++.++.| ||+|.+|+|+
T Consensus 71 rV~Dp~kA~~~V~n~~~~v~~~aetaLR~v~g~~~~D~~~~~~~~L~~~rd~I~~~l~~~l~e~~~~~--GI~V~~vrIk 148 (219)
T cd03402 71 RVVDTAKAVFNVDDYEEFVHIQSESALRHVASQYPYDDPVNKETSLRGNSDEVSDELARELQERLAVA--GVEVVEARIT 148 (219)
T ss_pred EECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC--CCEEEEEEEC
T ss_conf 98488999874265999999999999999862367410101345551489999999999987776630--9799999972
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 156257899999999887889
Q gi|254780958|r 222 DASPPREVADAFDEVQRAEQD 242 (355)
Q Consensus 222 ~v~~P~~v~~A~~~v~~A~qe 242 (355)
+++||+++..||...++|+.+
T Consensus 149 ~i~~p~eIa~AM~~r~qAea~ 169 (219)
T cd03402 149 HLAYAPEIAQAMLQRQQASAI 169 (219)
T ss_pred CCCCCHHHHHHHHHHHHHHHH
T ss_conf 535989999999999999999
No 11
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=100.00 E-value=8.5e-36 Score=257.49 Aligned_cols=188 Identities=23% Similarity=0.345 Sum_probs=154.9
Q ss_pred HHHCCCHHHHHHHHHHHHHC-CCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEE
Q ss_conf 42145388999998753311-35558983664575323687220489998267221147665036606841887634434
Q gi|254780958|r 68 SIYIVHPDERAVELRFGKPK-NDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVL 146 (355)
Q Consensus 68 g~~~V~~ge~gVv~rfGk~~-~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~ 146 (355)
|||+|++||+||+++||+.+ ..+++|||||++|||++|..++++.+..++... ..|+|+..|++++.++
T Consensus 1 S~~~V~~ge~gVv~~fg~~v~~~~~~pGlhfkiPfi~~v~~~d~R~q~~~~~~~----------~~tkD~~~v~i~~~v~ 70 (196)
T cd03401 1 SLYNVDGGHRAVLFNRGGGVKDLVYGEGLHFRIPWFQKPIIFDVRARPRNIEST----------TGSKDLQMVNITLRVL 70 (196)
T ss_pred CEEEECCCEEEEEEECCCCCCCCEECCEEEEEECCEEEEEEEECCCEEEECCCC----------CCCCCCCEEEEEEEEE
T ss_conf 969988975999998786444865099049984614899995213141201442----------2465665899999999
Q ss_pred EEECCHHHH--HHH-H-CC-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 221588785--320-1-29-899998887776777753010000015546788777999988863123461798753430
Q gi|254780958|r 147 YVVTDPRLY--LFN-L-EN-PGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIE 221 (355)
Q Consensus 147 yrI~Dp~~~--~~~-v-~~-~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~ 221 (355)
|++ +|.++ +|. + .+ .+..|.+.+++++|+++|+++++++++ +|++|+.++++.|++.++.| ||.|++|+|+
T Consensus 71 y~v-~~~~~~~~~~~~g~~~~~~~l~~~~~~~lR~v~g~~~~~ei~s-~R~~i~~~i~~~l~~~~~~~--GI~v~~V~i~ 146 (196)
T cd03401 71 FRP-DASQLPRIYQNLGEDYDERVLPSIINEVLKAVVAQFTAEELIT-QREEVSALIREALTERAKDF--GIILDDVSIT 146 (196)
T ss_pred EEE-CHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHHHHHHHHHHC--CEEEEEEEEE
T ss_conf 960-6778789998634013889999999998898845755999986-59999999999999888728--9499999998
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1562578999999998878899999999999999877688999999997778999999997232299
Q gi|254780958|r 222 DASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEAD 288 (355)
Q Consensus 222 ~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~ 288 (355)
+++||+++.+|+++.+.|+|+++|+..+.+ + |++++++.+.+|+|||+
T Consensus 147 ~i~~p~~~~~Aie~k~~a~q~a~~a~~~~~--------~-----------Ae~ea~~~i~~Aeg~Ae 194 (196)
T cd03401 147 HLTFSKEFTKAVEAKQVAQQEAERAKFVVE--------K-----------AEQEKQAAVIRAEGEAE 194 (196)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------H-----------HHHHHHHHHHHCCCHHH
T ss_conf 548998999999999999999999999999--------9-----------99999989986151530
No 12
>KOG2620 consensus
Probab=100.00 E-value=2.2e-34 Score=248.06 Aligned_cols=248 Identities=25% Similarity=0.309 Sum_probs=204.5
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEE-EEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEE
Q ss_conf 145388999998753311355589836645753236872-2048999826722114766503660684188763443422
Q gi|254780958|r 70 YIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIV-KVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYV 148 (355)
Q Consensus 70 ~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v-~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yr 148 (355)
..|++.+++||.|||||. ++++||+||.+|++++...+ +.+...+.++-.+ .+|+|+..|.++.+++||
T Consensus 10 ~~VpQ~~a~VvER~GkF~-~iLePG~~fl~p~~d~i~~v~~lkeia~~~~~q~---------aiTkDNV~v~idgvly~r 79 (301)
T KOG2620 10 RFVPQQEAAVVERFGKFH-RILEPGLHFLPPVIDKIAYVHSLKEIAILDPKQE---------AITKDNVFVQIDGVLYYR 79 (301)
T ss_pred EEECHHHHHHHHHHHHHH-HHCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCC---------EEECCCEEEEEEEEEEEE
T ss_conf 862214758999861066-6268855321433256898888888863155421---------365065799998999999
Q ss_pred ECCHHH--HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHH
Q ss_conf 158878--532012989999888777677775301000001554678877799998886312346179875343015625
Q gi|254780958|r 149 VTDPRL--YLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPP 226 (355)
Q Consensus 149 I~Dp~~--~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P 226 (355)
|.||.+ ..|.++||+..+.+.++++||+.+|+.++|.++ ++|+.++..|.+.|++.++.| |+++.+..|+|+.||
T Consensus 80 v~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vF-eer~~ln~sI~eainkA~~~w--G~~clr~eIrDI~pp 156 (301)
T KOG2620 80 VVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVF-EERNSLNKSIVEAINKAMEAW--GYECLRYEIRDIEPP 156 (301)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCCC
T ss_conf 83553243210468878999999999999863446488999-988789999999999998886--788888765315798
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--H---
Q ss_conf 78999999998878899999999999999877688999999997778999999997232299999999999869--9---
Q gi|254780958|r 227 REVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNA--P--- 301 (355)
Q Consensus 227 ~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~a--p--- 301 (355)
+.|+.||+....|++-+...+.|+|+++...+.+|+|+++..+...+|.+.++++.|.||++.......+-.+. .
T Consensus 157 ~~V~~AM~~q~~AeR~krAailesEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~a~~~a~~~~ 236 (301)
T KOG2620 157 PSVKRAMNMQNEAERMKRAAILESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAVAGTSAKLVM 236 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 77999999999999999888754002667765663022566776558899999988765799999886525503899999
Q ss_pred HHHH---H--HHHHHHHHHH------HCCCCEEEEECCCC
Q ss_conf 9999---9--9999999998------37995999967998
Q gi|254780958|r 302 TLLR---K--RIYLETMEGI------LKKAKKVIIDKKQS 330 (355)
Q Consensus 302 ~vt~---~--rlylet~~~v------l~~~~k~ii~~~~~ 330 (355)
++.. . -.|.+|++.| .+.++.+++.++-|
T Consensus 237 ~l~~~~g~~aasl~~a~qyIgaf~~lak~sntv~lP~~pg 276 (301)
T KOG2620 237 DLKQEGGVEAASLFDAEQYIGAFGKLAKKSNTVFLPHGPG 276 (301)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 9888446136789999999876421003484499358998
No 13
>KOG2621 consensus
Probab=99.97 E-value=1.6e-30 Score=222.47 Aligned_cols=210 Identities=24% Similarity=0.400 Sum_probs=172.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC-CCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEE
Q ss_conf 9997421453889999987533113-555898366457532368722048999826722114766503660684188763
Q gi|254780958|r 64 CAFQSIYIVHPDERAVELRFGKPKN-DVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLH 142 (355)
Q Consensus 64 ~~~sg~~~V~~ge~gVv~rfGk~~~-~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~ 142 (355)
-+|.|+.+|.+.|++||+|+|+... ...+||+-|.+|+||+..+||.+.+..+++.+.. ||+|...|.|+
T Consensus 50 S~~fclKiv~eYeR~VIfRLGRl~~~~~rGPGi~fvlPCIDt~~kVDLRt~sfnVPpqeI---------ltkDsvtvsVd 120 (288)
T KOG2621 50 SIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRKVDLRTQSFNVPPQEI---------LTKDSVTISVD 120 (288)
T ss_pred HHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCEEEEECCCCEEEEEEEEEEEECCCHHHH---------HCCCCEEEEEC
T ss_conf 898888766787651504552011168889986898504100666444677514788997---------42463589965
Q ss_pred EEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC
Q ss_conf 44342215887853201298999988877767777530100000155467887779999888631234617987534301
Q gi|254780958|r 143 FSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIED 222 (355)
Q Consensus 143 ~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~ 222 (355)
++|+|||.||...+-+|.|+....+..++++||+++|+.++.+++++ |+.|+.+++..|.+..+.| ||+|++|+|+|
T Consensus 121 AvVyyri~dpi~sv~~V~Da~~sTr~lAqttLrn~lgtk~L~eils~-r~~is~~~~~~Ld~~T~~W--GvkVeRVEikD 197 (288)
T KOG2621 121 AVVYYRISDPIIAVNNVGDADNATRLLAQTTLRNYLGTKTLSEILSS-REVIAQEAQKALDEATEPW--GVKVERVEIKD 197 (288)
T ss_pred EEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH-HHHHHHHHHHHHHHCCCCC--CEEEEEEEEEE
T ss_conf 09999954889997723478889999999999999733728999876-9999999987764211036--30799998752
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Q ss_conf 5625789999999988788999999999999998776889999999977789999999972322999999999---9986
Q gi|254780958|r 223 ASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYG---QYVN 299 (355)
Q Consensus 223 v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~---~Y~~ 299 (355)
|.+|.+.+.|+ .|+.|..| || .+.+.-||||-..+.++.. .-..
T Consensus 198 vrlp~qlqram----aaeAeA~r------------------eA-----------~Akviaaege~~as~al~~aa~v~~~ 244 (288)
T KOG2621 198 VRLPAQLQRAM----AAEAEATR------------------EA-----------RAKVIAAEGEKKASEALKEAADVISE 244 (288)
T ss_pred EECHHHHHHHH----HCHHHHHH------------------HH-----------HHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 00467650201----14024545------------------40-----------14678987445799999876320358
Q ss_pred CHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999999998379
Q gi|254780958|r 300 APTLLRKRIYLETMEGILKK 319 (355)
Q Consensus 300 ap~vt~~rlylet~~~vl~~ 319 (355)
+|...+.| ||+|+..+-+.
T Consensus 245 sp~alqLr-yLqtl~sia~e 263 (288)
T KOG2621 245 SPIALQLR-YLQTLNSIAAE 263 (288)
T ss_pred CCHHHHHH-HHHCCHHHHCC
T ss_conf 92356366-53022024407
No 14
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=99.97 E-value=9.9e-32 Score=230.43 Aligned_cols=158 Identities=24% Similarity=0.435 Sum_probs=145.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEE
Q ss_conf 74214538899999875331135558983664575323687220489998267221147665036606841887634434
Q gi|254780958|r 67 QSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVL 146 (355)
Q Consensus 67 sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~ 146 (355)
||||+|++||+||++|||++.+ +.+|||||++||++++..++++.+..+.. ...++|+|++.|.++++++
T Consensus 1 s~~~~V~~~e~~Vi~~fG~~~~-~~~pGlh~~~P~~~~~~~~~~r~~~~~~~---------~~~~~T~D~~~v~v~~~v~ 70 (160)
T smart00244 1 AAIKVVGEGEAGVVERLGRVLR-VLGPGLHFLIPFIDRVKKVDLRAQTDDVP---------PQEIITKDNVKVSVDAVVY 70 (160)
T ss_pred CCEEEECCCEEEEEEECCCEEE-EECCCEEEECCCCCEEEEEEEEEEEEECC---------CEEEECCCCCEEEEEEEEE
T ss_conf 9789988873999999795810-88891689817342589994146875058---------6683738998999999999
Q ss_pred EEECCHHHHHHHHCCHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCH
Q ss_conf 221588785320129899-9988877767777530100000155467887779999888631234617987534301562
Q gi|254780958|r 147 YVVTDPRLYLFNLENPGE-TLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASP 225 (355)
Q Consensus 147 yrI~Dp~~~~~~v~~~~~-~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~ 225 (355)
|||.||.++++++.+++. .+++.+++++|+++|+++++++++++|++++..+++.+++.++.| ||+|.+|.|++++|
T Consensus 71 yri~d~~~~~~~~~~~~~~~i~~~v~~~~R~vi~~~~~~~~~~~~r~~i~~~i~~~l~~~~~~~--Gi~i~~v~i~~i~~ 148 (160)
T smart00244 71 YRVLDPLKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERAEAW--GIEVEDVEIKDIRL 148 (160)
T ss_pred EEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC--CEEEEEEEEEECCC
T ss_conf 9987879977206898899999999999999963773899844408888999999999988748--97999999985589
Q ss_pred HHHHHHHHHHH
Q ss_conf 57899999999
Q gi|254780958|r 226 PREVADAFDEV 236 (355)
Q Consensus 226 P~~v~~A~~~v 236 (355)
|+++++||+++
T Consensus 149 p~~i~~ai~~k 159 (160)
T smart00244 149 PEEIQEAMEQQ 159 (160)
T ss_pred CHHHHHHHHHH
T ss_conf 99999999851
No 15
>pfam01145 Band_7 SPFH domain / Band 7 family. This family has been called SPFH, Band 7 or PHB domain.
Probab=99.96 E-value=4.4e-29 Score=212.78 Aligned_cols=163 Identities=35% Similarity=0.510 Sum_probs=148.7
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEE
Q ss_conf 14538899999875331135558983664575323687220489998267221147665036606841887634434221
Q gi|254780958|r 70 YIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVV 149 (355)
Q Consensus 70 ~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI 149 (355)
++|++||+||+++||++.+ +.+||+||++||++++..++++.+..++... ..++|+|+..++++++++|||
T Consensus 1 ~~V~~g~~~V~~~~G~~~~-~~~pG~~~~~P~~~~~~~v~~~~~~~~~~~~--------~~~~t~D~~~i~v~~~v~y~V 71 (177)
T pfam01145 1 KIVPPGEVGVVTRFGKVSR-VLGPGLHFKLPFIETIYVVDTRLQTLEVTVQ--------LEVLTKDGVPVTVDVTVQYRV 71 (177)
T ss_pred CEECCCCEEEEEECCCEEE-EECCCEEEEECCEEEEEEECCEEEEEECCCC--------CEEECCCCCEEEEEEEEEEEE
T ss_conf 9308881899998896815-9789648997577399991254899842664--------067869998999999999998
Q ss_pred CCHHHHHHHH---CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHH
Q ss_conf 5887853201---2989999888777677775301000001554678877799998886312346179875343015625
Q gi|254780958|r 150 TDPRLYLFNL---ENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPP 226 (355)
Q Consensus 150 ~Dp~~~~~~v---~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P 226 (355)
.||.++++++ .+++..|+..+++++|+++|+++++++++ +|++++.++.+.|++.++.| ||+|++|.|++++||
T Consensus 72 ~d~~~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~~~~~~~~-~r~~i~~~v~~~l~~~l~~~--Gi~i~~v~i~~i~~p 148 (177)
T pfam01145 72 EDPAKLVANYGGEDDLQELLRPLVRSALREVIARYTLDELLS-NREEIAQEVKEALQEELDKY--GIEIEDVQITDIDPP 148 (177)
T ss_pred CCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHHHHHHHC--CCEEEEEEEEECCCC
T ss_conf 999999987127113999999999999999860466999986-18999999999999999866--988999999744899
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 789999999988788999
Q gi|254780958|r 227 REVADAFDEVQRAEQDED 244 (355)
Q Consensus 227 ~~v~~A~~~v~~A~qe~e 244 (355)
+++.+++++++.|+++++
T Consensus 149 ~~~~~ai~~~~~a~~~~~ 166 (177)
T pfam01145 149 PEIAEAIEEKQAAEQEAE 166 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 16
>KOG3090 consensus
Probab=99.94 E-value=1.4e-26 Score=196.13 Aligned_cols=245 Identities=24% Similarity=0.330 Sum_probs=198.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCE
Q ss_conf 3799999999999999742145388999998-753311355589836645753236872204899982672211476650
Q gi|254780958|r 51 GSVYIILLLIGSFCAFQSIYIVHPDERAVEL-RFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSG 129 (355)
Q Consensus 51 ~~i~ii~~v~~~~~~~sg~~~V~~ge~gVv~-rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~ 129 (355)
+.-.++++.++++.+..|+|+|+-|++++++ |+|.....++..|+||.+|||+..+++|++.+...+...+.
T Consensus 20 ~l~~~~~~G~~~y~v~~sl~nVdgGHRAI~fnRi~Gik~~iy~EGtHf~iPwfe~pIiYDvRarP~~i~S~tG------- 92 (290)
T KOG3090 20 GLKLLLIGGLGAYGVTQSLYNVDGGHRAIVFNRIGGIKDDIYPEGTHFRIPWFERPIIYDVRARPRLISSPTG------- 92 (290)
T ss_pred HHHHHHHHCHHHHEECCEEEEECCCCEEEEEECCCCCHHCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCC-------
T ss_conf 8889987035554001135740487257997501351110056875586002236345552258410358888-------
Q ss_pred EEEECCCEEEEEEEEEEEEEC-CHHHHHHH---HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 366068418876344342215-88785320---12989999888777677775301000001554678877799998886
Q gi|254780958|r 130 LILTGDQNIVGLHFSVLYVVT-DPRLYLFN---LENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT 205 (355)
Q Consensus 130 ~mLT~D~n~V~v~~~V~yrI~-Dp~~~~~~---v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~ 205 (355)
|+|.++|++...|.-|-. |-.-.+|. ....|+.|.+++...|+.||++++..+++| +|+.++..+++.|-++
T Consensus 93 ---skDLQmVnI~lRVLsRP~~~~Lp~iyrtLG~~y~ERVLPSIinEvLKaVVAqfNASqLIT-QRe~VSrliRk~L~eR 168 (290)
T KOG3090 93 ---SKDLQMVNIGLRVLSRPMADQLPEIYRTLGQNYDERVLPSIINEVLKAVVAQFNASQLIT-QREQVSRLIRKILTER 168 (290)
T ss_pred ---CCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf ---764167875358844777556589999864484211317899999999999844898878-8999999999999987
Q ss_pred HCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31234617987534301562578999999998878899999999999999877688999999997778999999997232
Q gi|254780958|r 206 MDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQG 285 (355)
Q Consensus 206 l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~g 285 (355)
...+ -|.++||.|....+..++.+|++..+-|.||+||+ .-++..|+-+++..|.+|+|
T Consensus 169 A~~F--ni~LDDVSiT~l~F~~efTaAiEaKQvA~QeAqRA-------------------~F~VekA~qek~~~ivrAqG 227 (290)
T KOG3090 169 AADF--NIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRA-------------------KFIVEKAEQEKQSAIVRAQG 227 (290)
T ss_pred HHCC--CEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHCC
T ss_conf 7515--66750214545522778888887888889887642-------------------52267777765423532216
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH---HCC-CCEEEEECC
Q ss_conf 2999999999998699999999999999998---379-959999679
Q gi|254780958|r 286 EADRFLSIYGQYVNAPTLLRKRIYLETMEGI---LKK-AKKVIIDKK 328 (355)
Q Consensus 286 ea~rf~~i~~~Y~~ap~vt~~rlylet~~~v---l~~-~~k~ii~~~ 328 (355)
||.....|-.+.+++|.....| -+|+-++| ++. .+|++++++
T Consensus 228 EaksAqliGeAi~nn~~fi~Lr-ki~aAr~IA~tia~S~NkvyL~~~ 273 (290)
T KOG3090 228 EAKSAQLIGEAIKNNPAFITLR-KIEAAREIAQTIASSANKVYLSSD 273 (290)
T ss_pred CHHHHHHHHHHHHCCCCCEEEH-HHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 2478899999984795515413-678899999998607876896365
No 17
>KOG3083 consensus
Probab=99.86 E-value=8.1e-22 Score=164.47 Aligned_cols=237 Identities=21% Similarity=0.297 Sum_probs=185.8
Q ss_pred HHHHHHHHHCCCHHHHHHHH-HHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEE
Q ss_conf 99999742145388999998-75331135558983664575323687220489998267221147665036606841887
Q gi|254780958|r 62 SFCAFQSIYIVHPDERAVEL-RFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVG 140 (355)
Q Consensus 62 ~~~~~sg~~~V~~ge~gVv~-rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~ 140 (355)
.-.+-++.|.|+-|+++|++ ||-.+...+.+.|-||.+|+.++...++.+.+...+...+. |+|.+.|+
T Consensus 20 ~~~~~s~ly~vdgg~ravifdrf~gv~~~vvgegthflipw~qk~~i~d~rs~p~~v~~itG----------skdLQ~Vn 89 (271)
T KOG3083 20 GGVVNSALYNVDGGHRAVIFDRFRGVQDQVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITG----------SKDLQNVN 89 (271)
T ss_pred HHHHHHHHCCCCCCCEEEEEECCCCHHHHCCCCCCEEEEEECCCCEEEECCCCCCCCCCCCC----------CHHHHCCC
T ss_conf 64543311046787245774101240232046774365240367578761678765650237----------30201054
Q ss_pred EEEEEEEE-ECCHHHHHHHH---CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 63443422-15887853201---298999988877767777530100000155467887779999888631234617987
Q gi|254780958|r 141 LHFSVLYV-VTDPRLYLFNL---ENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 141 v~~~V~yr-I~Dp~~~~~~v---~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
+...+.+| +.+-.-+.|.. ...|..|.+++...|++||++++.++++| +|+.++..+...+.+....+ |+.++
T Consensus 90 iTlril~rp~~sqLP~If~~~G~dyDErVLpsI~~eiLKsVVa~FdA~eliT-qRe~vS~~v~~~lt~rA~~F--gl~Ld 166 (271)
T KOG3083 90 ITLRILFRPVVSQLPCIFTSIGEDYDERVLPSITTEILKSVVARFDAGELIT-QRELVSRQVSNDLTERAATF--GLILD 166 (271)
T ss_pred CEEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHH--CEEHH
T ss_conf 0589996033011436877523355521246501789999998504210335-65888898889999988862--70100
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53430156257899999999887889999999999999987768899999999777899999999723229999999999
Q gi|254780958|r 217 TISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQ 296 (355)
Q Consensus 217 ~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~ 296 (355)
+|.+....+-.++..|.+..+-|+||.||.+. ++..|+-.|.+.+.+||||++.-.-+..+
T Consensus 167 dvsiThltfGkEFt~AvE~KQVAQQEAErarF-------------------vVeKAeQqk~aavIsAEGds~aA~li~~s 227 (271)
T KOG3083 167 DVSITHLTFGKEFTEAVEAKQVAQQEAERARF-------------------VVEKAEQQKKAAVISAEGDSKAAELIANS 227 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHEEECCCCHHHHHHHHHH
T ss_conf 12233310007888999999999989888789-------------------99876654332224325645778888887
Q ss_pred HHHCHH-HHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECH
Q ss_conf 986999-99999999999998379959999679984754034
Q gi|254780958|r 297 YVNAPT-LLRKRIYLETMEGILKKAKKVIIDKKQSVMPYLPL 337 (355)
Q Consensus 297 Y~~ap~-vt~~rlylet~~~vl~~~~k~ii~~~~~~~~yLpl 337 (355)
..++-+ +...| -+|+-+++.... +.+.++.|||.
T Consensus 228 la~aG~gLielr-rlEAa~dia~~L------s~s~nv~YLp~ 262 (271)
T KOG3083 228 LATAGDGLIELR-RLEAAEDIAYQL------SRSRNVTYLPA 262 (271)
T ss_pred HHHCCCCEEEEH-HHHHHHHHHHHH------HCCCCCEECCC
T ss_conf 764277135520-456778999998------46899446248
No 18
>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.83 E-value=8.1e-19 Score=144.51 Aligned_cols=190 Identities=14% Similarity=0.202 Sum_probs=140.6
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEE
Q ss_conf 99742145388999998753311355589836645753236872204899982672211476650366068418876344
Q gi|254780958|r 65 AFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFS 144 (355)
Q Consensus 65 ~~sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~ 144 (355)
++++++.|++|++||-+|=|+...++.+||+|+++|||.++..+.++.++-++ ..+.++++.|.||.=|.-
T Consensus 1 ~~~~~H~v~EGhvgvYyRgGaLl~~~s~PG~H~~iPfiT~~~~vQ~TlQTD~v--~nVpCGTsgGvmi~Fd~I------- 71 (280)
T cd03406 1 LSSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPFITTYKSVQVTLQTDEV--KNVPCGTSGGVMIYFDRI------- 71 (280)
T ss_pred CCHHHCCCCCCCEEEEECCCEEECCCCCCCEEEEEEEEEEEEEEEEEEECCCC--CCCCCCCCCCEEEEEEEE-------
T ss_conf 95021015777269997374200467999717998765456788987301100--456777778737987436-------
Q ss_pred EEEEECC--HHHHHHHH-----CCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 3422158--87853201-----298-999988877767777530100000155467887779999888631234617987
Q gi|254780958|r 145 VLYVVTD--PRLYLFNL-----ENP-GETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 145 V~yrI~D--p~~~~~~v-----~~~-~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
+|.+ ...++|.+ .|+ ...+.+-+-..+++.++.+++++++.+.-+.|...++..||+.+..+..||.|.
T Consensus 72 ---eVvN~L~~~~Vydiv~n~t~dYDk~lI~dkihheinqfCS~htlqEVyid~FDqIDE~Lk~aLQ~dl~~~apGl~I~ 148 (280)
T cd03406 72 ---EVVNFLIPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQ 148 (280)
T ss_pred ---EEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf ---76502358899999985266654201344678899888620218899887777664899999987654027773699
Q ss_pred EEEEECCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5343015625789999999988-------7889999999999999987768899999
Q gi|254780958|r 217 TISIEDASPPREVADAFDEVQR-------AEQDEDRFVEESNKYSNRVLGSARGEAS 266 (355)
Q Consensus 217 ~V~i~~v~~P~~v~~A~~~v~~-------A~qe~er~i~eAe~~a~~i~~~A~geA~ 266 (355)
+|++.+..+|+.++..|+.+.+ |.|......-|||.++...+.+|+-+|+
T Consensus 149 aVRvtKPkiPe~Ir~NyE~me~EKTkllia~q~QkvvEKeaETerk~AviEAEk~a~ 205 (280)
T cd03406 149 AVRVTKPKIPEAIRRNYELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQ 205 (280)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999758998199999999998678889999999999998877788899998988888
No 19
>KOG2962 consensus
Probab=99.75 E-value=1.9e-16 Score=128.71 Aligned_cols=269 Identities=12% Similarity=0.177 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEE
Q ss_conf 99999999999997421453889999987533113555898366457532368722048999826722114766503660
Q gi|254780958|r 54 YIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILT 133 (355)
Q Consensus 54 ~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT 133 (355)
..+++.+++.++++.++.|++|++||-.|=|..-..+.+||+|.++|||.++.-|.++.++-++ +.+.++++.|.|++
T Consensus 8 v~~~~a~~~~~~~s~vHkieEGHvgvYyRGGALL~~~t~PG~Hl~lPFiTt~ksVQvTLQTDev--~nvPCGTsGGVlIy 85 (322)
T KOG2962 8 VAAAIALLVAFLSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPFITTYKSVQVTLQTDEV--KNVPCGTSGGVLIY 85 (322)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCCCCCCEEEEEEEECEEEEEEEEECCCC--CCCCCCCCCCEEEE
T ss_conf 9999999999999987405567358897065456346899707973102000005789621432--15778787717999
Q ss_pred CCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 68418876344342215887853201298999988877767777530100000155467887779999888631234617
Q gi|254780958|r 134 GDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGI 213 (355)
Q Consensus 134 ~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI 213 (355)
=|.--| |++...+-|-|..+- |.+......+-+-..-.+.+.++.+++.+++-+=-++|-.+++..||+.+..+.-|+
T Consensus 86 fdrIEV-VN~L~~d~Vydiv~N-YtvdYD~~lIfnKiHHE~NQFCS~HtLQeVYIdlFDqIDE~lK~ALQ~Dl~~mAPGl 163 (322)
T KOG2962 86 FDRIEV-VNFLRPDAVYDIVKN-YTVDYDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKDALQADLTRMAPGL 163 (322)
T ss_pred EEHHHH-HHHHCHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 742046-666142689999997-166776224466788899747436579999999999885999999998888528980
Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHHHHHHHHHHHHHH----------------HHHH
Q ss_conf 987534301562578999999998878------89999-999999999987768899999----------------9997
Q gi|254780958|r 214 LINTISIEDASPPREVADAFDEVQRAE------QDEDR-FVEESNKYSNRVLGSARGEAS----------------HIRE 270 (355)
Q Consensus 214 ~V~~V~i~~v~~P~~v~~A~~~v~~A~------qe~er-~i~eAe~~a~~i~~~A~geA~----------------~i~~ 270 (355)
+|..|++.+-..|+.++.-|+-+..-+ +++++ ...|||.++.+.+.+|+-.|+ +.+.
T Consensus 164 ~iqaVRVTKPkIPEaiRrN~E~ME~EkTKlLiA~ekQkVvEKeAETerkkAviEAEK~AqVa~I~~qqkl~EKetekr~~ 243 (322)
T KOG2962 164 EIQAVRVTKPKIPEAIRRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEKETEKRIS 243 (322)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999815999738999769988777656678888888999877788889998898776799999998865567788898
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 778999999997232299999999999869999999999999999837995999967
Q gi|254780958|r 271 SSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYLETMEGILKKAKKVIIDK 327 (355)
Q Consensus 271 ~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~~~k~ii~~ 327 (355)
+-|..+.-.-.++.+||+-+.+.-.+-..--.+|.+.|-|-....|.++ +|++..+
T Consensus 244 eiE~~~~LarekskADAe~Y~a~k~AeaNKlkLTpEyLeLkk~~AIAsN-sKIyfGd 299 (322)
T KOG2962 244 EIEDAAFLAREKSKADAEYYRALKEAEANKLKLTPEYLELKKIDAIASN-SKIYFGD 299 (322)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CEEEECC
T ss_conf 8777776766654035899999988751441378999989988988743-8344456
No 20
>cd02106 Band_7 The band 7 domain of flotillin (reggie) like proteins. This group contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic HflK/C plays a role i
Probab=99.64 E-value=2.4e-15 Score=121.44 Aligned_cols=107 Identities=36% Similarity=0.597 Sum_probs=98.1
Q ss_pred CCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHH--HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6503660684188763443422158878532012989--99988877767777530100000155467887779999888
Q gi|254780958|r 127 NSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPG--ETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQK 204 (355)
Q Consensus 127 ~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~--~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~ 204 (355)
....++|+|++.|.++++++|||+||.+|++++.++. ..++..+++++|+++|++++++++ ++|++++..+++.+++
T Consensus 12 ~~~~~~T~d~~~i~v~~~v~~rI~d~~~~~~~~~~~~~~~~i~~~~~~~lr~~i~~~~~~~~~-~~r~~i~~~i~~~l~~ 90 (121)
T cd02106 12 PPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNVRDPEDEEALRQLAQSALRSVIGKMTLDELL-EDRDEIAAEVREALQE 90 (121)
T ss_pred CCCEEECCCCCEEEEEEEEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 986758589989999999999993679864541792099999999999999997115377652-0166689999999988
Q ss_pred HHCCCCCEEEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 63123461798753430156257899999999
Q gi|254780958|r 205 TMDYYKSGILINTISIEDASPPREVADAFDEV 236 (355)
Q Consensus 205 ~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v 236 (355)
.++.| ||+|.+|.|++++||+++++|+.++
T Consensus 91 ~~~~~--Gi~v~~v~i~~i~~p~~~~~ai~~~ 120 (121)
T cd02106 91 DLDKY--GIEVVDVRIKDIDPPEEVQEAMEDR 120 (121)
T ss_pred HHHHH--CCEEEEEEEEECCCCHHHHHHHHHH
T ss_conf 78751--9589999998638999999999700
No 21
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.58 E-value=1.8e-13 Score=108.87 Aligned_cols=158 Identities=15% Similarity=0.203 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHH--HHHCCCHHHHHHHHHH---------HHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCC
Q ss_conf 999999999997--4214538899999875---------33113555898366457532368722048999826722114
Q gi|254780958|r 56 ILLLIGSFCAFQ--SIYIVHPDERAVELRF---------GKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASV 124 (355)
Q Consensus 56 i~~v~~~~~~~s--g~~~V~~ge~gVv~rf---------Gk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~ 124 (355)
+.++++++++|. .||++.+...++|..+ |.-. .+.-+|.||.+|+|++...++.+...+++.
T Consensus 19 v~i~~ilv~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~-~vV~gGg~~v~Pi~q~~~r~~l~~i~l~v~------ 91 (548)
T COG2268 19 VVILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQ-KVVRGGGAIVMPIFQTIERMSLTTIKLEVE------ 91 (548)
T ss_pred HHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCCCCCCCCCCC-CEEECCCEEEECEEEEEEEEEEEEEEEEEE------
T ss_conf 9999999999974237996188846998456457764345775-378558648843056667743157421003------
Q ss_pred CCCCEEEEECCCEEEEEEEEEEEEECCHH----HHH--HHHC----CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 76650366068418876344342215887----853--2012----9899998887776777753010000015546788
Q gi|254780958|r 125 GSNSGLILTGDQNIVGLHFSVLYVVTDPR----LYL--FNLE----NPGETLKQVSESAMREVVGRRFAVDIFRSQRQQI 194 (355)
Q Consensus 125 ~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~----~~~--~~v~----~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i 194 (355)
....+|+|+..++++.+-.-+|.|-. .|. |..+ +....+....+.++|.+++++++.++. ++|..+
T Consensus 92 ---~~~v~t~Dg~p~~v~~~a~v~i~~~~~dI~~aae~~g~Kg~~~~l~~~~~~~l~~~lR~i~a~~t~~el~-edR~~F 167 (548)
T COG2268 92 ---IDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERFGGKGSREDLEQLAEDTLEGALRAVLAQMTVEELN-EDRLGF 167 (548)
T ss_pred ---EEEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHH
T ss_conf ---4016735997443056899883687889999999854535799999999999999999998755999874-667627
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEEEEEECCCHH
Q ss_conf 77799998886312346179875343015625
Q gi|254780958|r 195 ALEVRNLIQKTMDYYKSGILINTISIEDASPP 226 (355)
Q Consensus 195 ~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P 226 (355)
...|.+.+...|+.. |+.++++.|.++.=+
T Consensus 168 ~~~V~~~v~~dL~k~--Gl~l~s~~I~~i~d~ 197 (548)
T COG2268 168 AQVVQEVVGDDLSKM--GLVLDSLAINDINDT 197 (548)
T ss_pred HHHHHHHHHHHHHHC--CEEEEEEEECCCCCC
T ss_conf 999999988888755--736522342465455
No 22
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.54 E-value=3.4e-14 Score=113.76 Aligned_cols=105 Identities=18% Similarity=0.331 Sum_probs=89.9
Q ss_pred EEEECCCEEEEEEEEEEEEEC-CHHHHHHH---HCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 366068418876344342215-88785320---12989999888777677775301000001554678877799998886
Q gi|254780958|r 130 LILTGDQNIVGLHFSVLYVVT-DPRLYLFN---LENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT 205 (355)
Q Consensus 130 ~mLT~D~n~V~v~~~V~yrI~-Dp~~~~~~---v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~ 205 (355)
..+|+|+..|+++++|+||+. +....+|. ....+..++....+++|+++|+|+++++++++|++|+.++++.|.+.
T Consensus 15 ~vlskdgl~v~~dvtV~Y~v~~~~~~~l~~~~G~~y~~~iI~p~vrs~~R~v~~~y~a~elys~kR~~i~~~I~~~l~~~ 94 (124)
T cd03400 15 DVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYTAEQIYSTKRKEIESAIKKELIEE 94 (124)
T ss_pred EEECCCCCEEEEEEEEEEEECHHHHHHHHHHHCCCHHHEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87878997899999999999888899999984977777352178999999997337899998857999999999999998
Q ss_pred HCCCCCEEEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 3123461798753430156257899999999
Q gi|254780958|r 206 MDYYKSGILINTISIEDASPPREVADAFDEV 236 (355)
Q Consensus 206 l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v 236 (355)
++.| ||.|++|.|++++||+++.+|+++.
T Consensus 95 l~~~--gi~ve~VlIr~I~lP~~~~~AIE~K 123 (124)
T cd03400 95 FVGD--GLILEEVLLRNIKLPDQIADAIEAK 123 (124)
T ss_pred HHHC--CEEEEEEEEEEEECCHHHHHHHHHC
T ss_conf 8638--9599999999752898999999841
No 23
>KOG2668 consensus
Probab=99.39 E-value=1.5e-10 Score=89.55 Aligned_cols=246 Identities=20% Similarity=0.186 Sum_probs=152.7
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEE--E
Q ss_conf 42145388999998753311355589836645753236872204899982672211476650366068418876344--3
Q gi|254780958|r 68 SIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFS--V 145 (355)
Q Consensus 68 g~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~--V 145 (355)
+|++-++.+.-++.-+|--......-|.-| |++++..+++...++++..+.+- |+.+..+.|..+ |
T Consensus 1 ~f~~~~~~~~l~itg~g~~~~~lv~~~wvf---~wq~~q~~~ln~mtl~~~~e~v~---------tsegvP~~vtgVaqv 68 (428)
T KOG2668 1 MFKVAGASQYLAITGGGIEDIKLVKKSWVF---PWQQCTVFDVSPMTLTFKVENVM---------TSEGVPFVVTGVAQV 68 (428)
T ss_pred CCCCCCCCCEEEEECCCCCCCEECCCCEEE---EEEEEEEEEECCEEEEEECCHHH---------CCCCCCEEEEEEEEE
T ss_conf 976688351577514676775332453265---63113699612336510222011---------136885576656898
Q ss_pred EEEECCHHHHH--------H-HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 42215887853--------2-01298999988877767777530100000155467887779999888631234617987
Q gi|254780958|r 146 LYVVTDPRLYL--------F-NLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 146 ~yrI~Dp~~~~--------~-~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
.-++.|+...+ . ++.+...++....+.-+|.++|++|+++++ .+|.++...|++..+..|+.. ||.|.
T Consensus 69 ki~~~~~~elL~~A~e~flgK~~~eIn~~vl~tlEGh~Rai~asmTvEEIy-Kdrk~F~k~Vfeva~~dl~~m--Gi~I~ 145 (428)
T KOG2668 69 KIRVDDADELLLYACEQFLGKSSNEINELVLGTLEGHTRAILASMTVEEIY-KDRKEFKKEVFEVAQLDLGQM--GIVIY 145 (428)
T ss_pred EECCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHHHHHHC--CEEEE
T ss_conf 512589899999999984365578999999998641688888760199997-148999999999863555515--26999
Q ss_pred EEEEECC-CHHH-HHHHHH-----------------------------------------------------------H-
Q ss_conf 5343015-6257-899999-----------------------------------------------------------9-
Q gi|254780958|r 217 TISIEDA-SPPR-EVADAF-----------------------------------------------------------D- 234 (355)
Q Consensus 217 ~V~i~~v-~~P~-~v~~A~-----------------------------------------------------------~- 234 (355)
+..|+|+ |-|. ++-.+. +
T Consensus 146 s~tiKdl~D~~g~~YlssLGka~taev~rdArIgvAEAk~eaGikEa~~~~~~~aak~~aetkI~~~qR~~el~Ka~~dv 225 (428)
T KOG2668 146 SATIKDLVDVPGHEYLSSLGKATTAEVARDARIGVAEAKREAGIKEATGLTEQNAAKIDAETKIASAQRTKELIKAATDV 225 (428)
T ss_pred EEEHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76765654464458898861677899876134255776443152466677887677663133677766569988753246
Q ss_pred HH--------------------------------HHHH----HHHH--H----------HHHHHHHHHHHH---------
Q ss_conf 99--------------------------------8878----8999--9----------999999999987---------
Q gi|254780958|r 235 EV--------------------------------QRAE----QDED--R----------FVEESNKYSNRV--------- 257 (355)
Q Consensus 235 ~v--------------------------------~~A~----qe~e--r----------~i~eAe~~a~~i--------- 257 (355)
+| .+++ ++.| | .-.||+.++...
T Consensus 226 eV~~~~aEA~lAyelqaak~kq~i~~e~~qV~vVEr~kqvAv~eqEiqr~~~el~A~vR~paeAe~~r~~klaEAnk~~~ 305 (428)
T KOG2668 226 EVNTNKAEADLAYELQAAKTKQAIREEEIQVAVVERTKQVAVREQEIQRRVEELNATVRTPAEAEVERETKLAEANKELY 305 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 66652787899999888999999886421368888878887789999988998877717823778999999998789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH-------HCCCCEEEE-ECC
Q ss_conf 76889999999977789999999972322999999999998699999999999999998-------379959999-679
Q gi|254780958|r 258 LGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYLETMEGI-------LKKAKKVII-DKK 328 (355)
Q Consensus 258 ~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlylet~~~v-------l~~~~k~ii-~~~ 328 (355)
+-.|++||..++-..+|++..+-+.|..||++...-...|+..-+-+..++.||++..| |++++|+.+ +++
T Consensus 306 ~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLealp~Ia~~ia~plaktnkI~v~s~g 384 (428)
T KOG2668 306 NKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEALPMIAAEIAAPLAKTNKISVWSHG 384 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEEEECC
T ss_conf 9988888999998505788888765554798887778999985566899999998898888751203206758999368
No 24
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=99.32 E-value=1.4e-11 Score=96.30 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=85.2
Q ss_pred EEECCCEEEEEEEEEEEEECCHHHHHHHH---------CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 66068418876344342215887853201---------298999988877767777530100000155467887779999
Q gi|254780958|r 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFNL---------ENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNL 201 (355)
Q Consensus 131 mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v---------~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~ 201 (355)
++|+|+-.++|+..++|||.++.+.+.+. .+....+....+.+||+++|+++++++++ +|+++..+|++.
T Consensus 16 viT~D~v~v~v~av~~vkV~~~~~~i~~aaq~fl~~~~~~i~~~~~~~~~g~LR~ivg~mtleei~~-~R~~f~~~V~~~ 94 (128)
T cd03399 16 VITRDGVRVDVTAVFQVKVGGTEEAIATAAERFLGKSEEEIEELVKEVLEGHLRAVVGTMTVEEIYE-DRDKFAEQVQEV 94 (128)
T ss_pred EEECCCCEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH-HHHHHHHHHHHH
T ss_conf 4835996899999999996897999999999883589999999999999999999985588999997-499999999999
Q ss_pred HHHHHCCCCCEEEEEEEEEECCCHHHHHHHHH
Q ss_conf 88863123461798753430156257899999
Q gi|254780958|r 202 IQKTMDYYKSGILINTISIEDASPPREVADAF 233 (355)
Q Consensus 202 lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~ 233 (355)
+...++.| |++|.+|.|++++++..+.+++
T Consensus 95 i~~~l~~~--GL~l~sv~I~di~d~~~y~~~l 124 (128)
T cd03399 95 VAPDLNKM--GLELDSFTIKDITDTDGYLNNL 124 (128)
T ss_pred HHHHHHHC--CCEEEEEEEEEECCCCCHHHHC
T ss_conf 99999956--8799999989857975489877
No 25
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.11 E-value=2.6e-10 Score=87.87 Aligned_cols=161 Identities=21% Similarity=0.265 Sum_probs=110.7
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCCEEC----CCCCC---------------EEEEEEEEEEE-EEECCCCCCCCCC
Q ss_conf 4214538899999875331135558983664----57532---------------36872204899-9826722114766
Q gi|254780958|r 68 SIYIVHPDERAVELRFGKPKNDVFLPGLHMM----FWPID---------------QVEIVKVIERQ-QKIGGRSASVGSN 127 (355)
Q Consensus 68 g~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~----~ppi~---------------~v~~v~v~~~~-~~~~~~~~~~~~~ 127 (355)
+--+|++||.||..+.|++.+ +.+||-|.. +|+.. .|..++++... ..++........+
T Consensus 15 s~LiV~e~Q~avf~~~Gki~d-v~~pg~~~l~t~n~P~l~~l~~~~~g~~spf~~evyfvn~~~~~~~kwGt~~pi~~~d 93 (207)
T cd03408 15 SQLIVREGQAAVFVNEGKVAD-VFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVFGRD 93 (207)
T ss_pred CEEEECCCCEEEEEECCEEEE-EECCCCCEEECCCCCHHHHHCCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCCCCC
T ss_conf 899987996899998999989-9779972463599730522226464567764235354677899850456779866668
Q ss_pred CEEEEECCCEEEEEEEEEEEEECCHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCHHHHHHH
Q ss_conf 503660684188763443422158878532012---------989999888777677775301000001-5546788777
Q gi|254780958|r 128 SGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLE---------NPGETLKQVSESAMREVVGRRFAVDIF-RSQRQQIALE 197 (355)
Q Consensus 128 ~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~---------~~~~~l~~~~esalR~vvg~~~~d~il-t~~R~~i~~~ 197 (355)
.-. ....+...-+..|||+||..|+.++. +....++....+++.+.++...+..+. .....+|+..
T Consensus 94 ~~~----~~v~lra~G~ys~kI~Dp~~F~~~ivg~~~~~~~~~i~~~l~~~i~~~l~~~l~~~~~~~~~~~~~~~els~~ 169 (207)
T cd03408 94 SEF----GGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKA 169 (207)
T ss_pred CCC----CEEEEEEEEEEEEEECCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 875----5177999999999984899999983688653617999999999999999999986285252678999999999
Q ss_pred HHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 99998886312346179875343015625789999999
Q gi|254780958|r 198 VRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDE 235 (355)
Q Consensus 198 v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~ 235 (355)
+++.|...++.| |++|.++.|..+.+|++++++++.
T Consensus 170 i~~~l~~~~~~~--Glel~~f~I~sI~~pee~~~~i~k 205 (207)
T cd03408 170 VREALAPWFASF--GLELVSVYIESISYPDEVQKLIDK 205 (207)
T ss_pred HHHHHHHHHHHC--CCEEEEEEEEECCCCHHHHHHHHC
T ss_conf 999999999965--918888889755799899998744
No 26
>pfam12221 HflK_N Bacterial membrane protein N terminal. This domain is found in bacteria. This domain is typically between 65 to 81 amino acids in length. This domain is found associated with pfam01145. This domain is the N terminal of the bacterial membrane protein HflK. HflK complexes with HflC to form a membrane protease which is modulated by the GTPase HflX. The N terminal domain of HflK is the membrane spanning region which anchors the protein in the bacterial membrane.
Probab=98.53 E-value=1.2e-07 Score=70.15 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 998889999977877777889999988998999999998721168877
Q gi|254780958|r 1 MSYDKNNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFK 48 (355)
Q Consensus 1 M~wn~~~~p~~~~~~~~~~~~~~~~~p~dlde~~~~~~~~~~~~~~~~ 48 (355)
|+||+++++ ..++|+++ ++.+++||||||++|+++++|+++++++
T Consensus 1 MawNepg~~--~~dPWg~~-~g~~~gPPDLDe~~r~~~~kl~~lfgg~ 45 (46)
T pfam12221 1 MAWNEPGNN--DKDPWGNG-GGKNQGPPDLDEIFRKLQDKLGGLFGGK 45 (46)
T ss_pred CCCCCCCCC--CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 987788898--88987788-8888899789999999999998660589
No 27
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=98.42 E-value=1e-05 Score=57.37 Aligned_cols=243 Identities=13% Similarity=0.126 Sum_probs=125.0
Q ss_pred CCCC---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC----------------CCCCCCCCCHHHHHHHHHHH
Q ss_conf 9888---9999977877777889999988998999999998721----------------16887764379999999999
Q gi|254780958|r 2 SYDK---NNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFD----------------LIPFFKSYGSVYIILLLIGS 62 (355)
Q Consensus 2 ~wn~---~~~p~~~~~~~~~~~~~~~~~p~dlde~~~~~~~~~~----------------~~~~~~~~~~i~ii~~v~~~ 62 (355)
||.. ++++++ +++.|++.+++.+=..-+-++.+++...|+ ...++...++++++++++.+
T Consensus 15 PWG~~~~~~~~~g-~~~~gg~~qgPPDLDE~~rkl~~kl~~l~gg~g~g~gggg~~~~~~~~~~~~~i~iv~~~lv~~Wl 93 (419)
T PRK10930 15 PWGSSKPGGNSGG-NGNKGGRDQGPPDLDDIFRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAVVIIWA 93 (419)
T ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9888998888777-778777779999999999999998610137899999999888888877541189999999999999
Q ss_pred HHHHH-------------H--HHCCCHHHHHHHHHHHHHCCCCCCCCCE-ECCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 99997-------------4--2145388999998753311355589836-645753236872204899982672211476
Q gi|254780958|r 63 FCAFQ-------------S--IYIVHPDERAVELRFGKPKNDVFLPGLH-MMFWPIDQVEIVKVIERQQKIGGRSASVGS 126 (355)
Q Consensus 63 ~~~~s-------------g--~~~V~~ge~gVv~rfGk~~~~v~~pGlh-~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~ 126 (355)
+..|- | ..++.|| ++| + .|.+- ..+.-++++..+......+ +.+
T Consensus 94 ~sGfY~V~~~E~gVVlRFGky~~t~~PG-----Lhw----~---p~pIe~V~~VnV~~vR~~~~~~lML--------T~D 153 (419)
T PRK10930 94 ASGFYTIKEAERGVVTRFGKFSHLVEPG-----LNW----K---PTFIDEVKPVNVEAVRELAASGVML--------TSD 153 (419)
T ss_pred HCEEEEECCCCEEEEEECCCCCCCCCCC-----CCC----C---CCCCCEEEEECCEECCCCCCCCCEE--------ECC
T ss_conf 8225997765137878614511020898-----775----3---6775549984452102456566025--------078
Q ss_pred CCEEEEECCCEEEEEEEE------EEEEECCHHHHHHHHCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 650366068418876344------34221588785320129899998887-77677775301000001554678877799
Q gi|254780958|r 127 NSGLILTGDQNIVGLHFS------VLYVVTDPRLYLFNLENPGETLKQVS-ESAMREVVGRRFAVDIFRSQRQQIALEVR 199 (355)
Q Consensus 127 ~~~~mLT~D~n~V~v~~~------V~yrI~Dp~~~~~~v~~~~~~l~~~~-esalR~vvg~~~~d~ilt~~R~~i~~~v~ 199 (355)
.. . +.- -..|.+. -.|+|.||..-+..+. +.++|.++ .+.|-.++..-. .+ + ..++...++
T Consensus 154 eN-I-VdV---~~~VQYrI~dp~~yLFnv~dPe~tlr~aa--ESAmReVVG~~~~d~vLT~gR-~~-I---a~~v~~~lQ 221 (419)
T PRK10930 154 EN-V-VRV---EMNVQYRVTDPEKYLFSVTSPDDSLRQAT--DSALRGVIGKYTMDRILTEGR-TV-I---RSDTQRELE 221 (419)
T ss_pred CC-E-EEE---EEEEEEEECCHHHHEEECCCHHHHHHHHH--HHHHHHHHCCCCHHHHHCCCH-HH-H---HHHHHHHHH
T ss_conf 87-6-987---78999995685781364578768999999--999999976364899964888-99-9---999999999
Q ss_pred HHHHHH---HCCCCCEEEEEEEEEECCCHH--HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998886---312346179875343015625--789999999988---------------788999999999999998776
Q gi|254780958|r 200 NLIQKT---MDYYKSGILINTISIEDASPP--REVADAFDEVQR---------------AEQDEDRFVEESNKYSNRVLG 259 (355)
Q Consensus 200 ~~lq~~---l~~y~~GI~V~~V~i~~v~~P--~~v~~A~~~v~~---------------A~qe~er~i~eAe~~a~~i~~ 259 (355)
+.|... +.-- .|.+.++.-..---+ .+|..|-+|..+ |+-+++|++.||++|+.++++
T Consensus 222 ~~Ld~Y~~GI~I~--~V~lq~a~PP~~V~~AF~DV~~ArqD~er~ineA~aYaN~iiP~ArG~A~rii~eAeaYk~~vV~ 299 (419)
T PRK10930 222 ETIRPYDMGITLL--DVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTIL 299 (419)
T ss_pred HHHHHHCCCCEEE--EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998508997899--98846789988899999999999988999999999999753513213899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999999997778999999
Q gi|254780958|r 260 SARGEASHIRESSIAYKDRI 279 (355)
Q Consensus 260 ~A~geA~~i~~~Aeay~~~~ 279 (355)
+|+|||++-..--+.|+.+-
T Consensus 300 ~A~Gea~RF~~ll~eY~kAP 319 (419)
T PRK10930 300 EAQGEVARFAKLLPEYKAAP 319 (419)
T ss_pred HHHHHHHHHHHHHHHHHHCH
T ss_conf 64535999999999998686
No 28
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=98.28 E-value=5.5e-06 Score=59.12 Aligned_cols=134 Identities=12% Similarity=0.139 Sum_probs=90.9
Q ss_pred CCCCCEEEEEEEEEEE-EEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHH---------HHCCHHHHHHH
Q ss_conf 5753236872204899-9826722114766503660684188763443422158878532---------01298999988
Q gi|254780958|r 99 FWPIDQVEIVKVIERQ-QKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLF---------NLENPGETLKQ 168 (355)
Q Consensus 99 ~ppi~~v~~v~v~~~~-~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~---------~v~~~~~~l~~ 168 (355)
.|+-+.|+.|++++.. +.++.+....-.+... --+-.+...-+..|+|+||..|+- .|++-++.+-+
T Consensus 90 sp~k~eVyfvntqe~~girwGT~qpin~~dn~~---~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls 166 (345)
T COG4260 90 SPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFY---NGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLS 166 (345)
T ss_pred CCCCCEEEEEECCEECCEECCCCCCEECCCCCC---CCEEEEEECCEEEEEECCHHHHHHHCCCCCCEEEHHHHHHHHHH
T ss_conf 865305999861202036337987703255666---65027761524789842789999865688755778998898999
Q ss_pred HHHHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 8777677775301000-00155467887779999888631234617987534301562578999999998
Q gi|254780958|r 169 VSESAMREVVGRRFAV-DIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQ 237 (355)
Q Consensus 169 ~~esalR~vvg~~~~d-~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~ 237 (355)
..-.+|-..++++-.+ .-|+.+.-+|+.-+++.|...+..| |.+|++|+|-.+.+|++++++++..+
T Consensus 167 ~~m~al~tai~q~G~~~~~ltan~~elsk~m~e~Ld~q~~q~--Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 167 EFMGALATAINQSGVRFSFLTANQMELSKYMAEVLDEQWTQY--GMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHH--CCEEEEEEEEEECCCHHHHHHHHHHC
T ss_conf 999999999876194431110007789999999873899861--71676678987538689999987650
No 29
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.92 E-value=0.00051 Score=46.03 Aligned_cols=147 Identities=21% Similarity=0.276 Sum_probs=81.9
Q ss_pred EEEECCHHHHHHH-HCC-HHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEE
Q ss_conf 4221588785320-129-899998887-77677775301000001554678877799998886-3123461798753430
Q gi|254780958|r 146 LYVVTDPRLYLFN-LEN-PGETLKQVS-ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT-MDYYKSGILINTISIE 221 (355)
Q Consensus 146 ~yrI~Dp~~~~~~-v~~-~~~~l~~~~-esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~-l~~y~~GI~V~~V~i~ 221 (355)
.+.+.++..+... +.+ .+.+++.++ ...+-+++... -++ + ...+...+.+.+... +.-- .|.|.++.+.
T Consensus 79 ~~~v~~~~~~~~~~i~~~~~salR~vig~~~~~~vl~~~-R~~-i---~~~i~~~l~~~l~~~GI~V~--~V~I~~i~~P 151 (242)
T cd03405 79 YQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGE-RGE-L---MEEIRRAVAEEAKELGIEVV--DVRIKRIDLP 151 (242)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC-HHH-H---HHHHHHHHHHHHHHCCCEEE--EEEEEECCCC
T ss_conf 998568466799999999999999996367488874226-999-9---99999999998876595699--9998646999
Q ss_pred CCCHHHHH---HHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15625789---999----999988788--999999999999998776889999999977789999999972322999999
Q gi|254780958|r 222 DASPPREV---ADA----FDEVQRAEQ--DEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLS 292 (355)
Q Consensus 222 ~v~~P~~v---~~A----~~~v~~A~q--e~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~ 292 (355)
.- .-+.+ ..| ..+..+|+. +.++.+.+|++++..+.++|..+|..++++|+|++.+.+++|-+.+..|..
T Consensus 152 ~~-v~~Ai~~~~~aere~~a~~~~ae~~~ea~~~~a~a~~~~~~~~AeA~~~a~~~~A~geAea~~~~~~a~~~~pe~~~ 230 (242)
T cd03405 152 EE-VSESVYRRMRAERERIAAEFRAEGEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYA 230 (242)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 89-99999999999999999999989999989989889999999877889999999867899999999999865968999
Q ss_pred HH---HHHHHC
Q ss_conf 99---999869
Q gi|254780958|r 293 IY---GQYVNA 300 (355)
Q Consensus 293 i~---~~Y~~a 300 (355)
+| ++|+++
T Consensus 231 ~~~~lea~k~~ 241 (242)
T cd03405 231 FYRSLEAYRNS 241 (242)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999952
No 30
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=97.59 E-value=0.0073 Score=38.34 Aligned_cols=144 Identities=17% Similarity=0.213 Sum_probs=76.5
Q ss_pred HHHHCCHHHHHHHHH--HHHHHHHHHCCCCCCCCCC-CHHHH----HHHHHHHHHHHHCCCCCEEEEE--EEEEECCCHH
Q ss_conf 320129899998887--7767777530100000155-46788----7779999888631234617987--5343015625
Q gi|254780958|r 156 LFNLENPGETLKQVS--ESAMREVVGRRFAVDIFRS-QRQQI----ALEVRNLIQKTMDYYKSGILIN--TISIEDASPP 226 (355)
Q Consensus 156 ~~~v~~~~~~l~~~~--esalR~vvg~~~~d~ilt~-~R~~i----~~~v~~~lq~~l~~y~~GI~V~--~V~i~~v~~P 226 (355)
.|.+.||...+.... +.+|+..+ +..+-+.+.. .-+++ ..++.+.+++.++.. +.=- .|.|.++..-
T Consensus 95 ~yrI~dp~~~~~~~~~~~~~l~~~~-~~~lR~~ig~~~lde~l~~~R~~i~~~i~~~l~~~---~~~~~~GI~v~~V~i~ 170 (266)
T cd03404 95 QYRISDPYDYLFNVRDPEGTLRQAA-ESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAI---LDAYKAGIEIVGVNLQ 170 (266)
T ss_pred EEEECCHHHHHHHCCCHHHHHHHHH-HHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHH---HHCCCCCEEEEEEEEE
T ss_conf 9998868998886258999999999-99999997266068886437999999999999998---7345686799999975
Q ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf 7-899999999887889999999999999987768899999999777899999999723229999999999986999999
Q gi|254780958|r 227 R-EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLR 305 (355)
Q Consensus 227 ~-~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~ 305 (355)
. ..-+ ++..|-.+..+ |+..+.+.+.+|+++|++++.+|++++++++..|++++++ .+..+-. +.-+
T Consensus 171 ~i~~P~---~v~~a~~~~~~----A~~e~~~~~~~ae~~a~~~~~~A~~ea~~~~~~Aea~~~~--~~~~aeg---eA~~ 238 (266)
T cd03404 171 DADPPE---EVQDAFDDVNK----ARQDRERLINEAEAYANEVVPKARGEAARIIQEAEAYKEE--VIAEAQG---EAAR 238 (266)
T ss_pred ECCCCH---HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHH
T ss_conf 269989---99999999999----9999999999999999999999888999999999999999--9987243---6999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780958|r 306 KRIYLETMEG 315 (355)
Q Consensus 306 ~rlylet~~~ 315 (355)
.+.|++++++
T Consensus 239 ~~~~~~ay~k 248 (266)
T cd03404 239 FESLLAEYKK 248 (266)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
No 31
>PRK11029 FtsH protease regulator HflC; Provisional
Probab=97.58 E-value=0.00087 Score=44.46 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999877688999999997778999999997232299
Q gi|254780958|r 244 DRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEAD 288 (355)
Q Consensus 244 er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~ 288 (355)
+|++.|.+..|+...++++++|++|+.+|+.++..+.++|+.+|+
T Consensus 225 ~rM~aER~~~A~~~raeG~~~a~~Ira~ad~e~~~i~AeA~r~a~ 269 (334)
T PRK11029 225 NRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGR 269 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999878999999898888888999888998999
No 32
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=97.28 E-value=0.016 Score=35.99 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=58.7
Q ss_pred EEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 887634434221588785320129899998887776777753010000015-5467887779999888631234617987
Q gi|254780958|r 138 IVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
.+-+...+.|++.|-... -.+.... ....++++..+++.+.+++-+ .|++.+..++++.++..|.. |..|.
T Consensus 78 ~~~v~i~i~l~~~n~~~~-~el~~~~----p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~---g~~V~ 149 (159)
T COG1580 78 DRYVKIAITLEVANKALL-EELEEKK----PEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKE---GQVVK 149 (159)
T ss_pred CEEEEEEEEEEECCHHHH-HHHHHHH----HHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHC---CCEEE
T ss_conf 479999998860888899-9999756----899999999997178988368221899999999999899845---87267
Q ss_pred EEEEECCC
Q ss_conf 53430156
Q gi|254780958|r 217 TISIEDAS 224 (355)
Q Consensus 217 ~V~i~~v~ 224 (355)
+|.+.+..
T Consensus 150 dV~fT~fi 157 (159)
T COG1580 150 DVLFTNFI 157 (159)
T ss_pred EEEEEHHH
T ss_conf 78555131
No 33
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=97.19 E-value=0.0017 Score=42.61 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98878899999999999999877688999999997778999999997
Q gi|254780958|r 236 VQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQE 282 (355)
Q Consensus 236 v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~ 282 (355)
|..++++.++.+.+|+..|..|+.+|+.+|++|+.+|+..+.+.-..
T Consensus 17 Vekg~~eA~~IIa~A~~~A~~Iv~~Ae~eAe~i~~~AekeA~~~k~~ 63 (198)
T PRK01558 17 LEEAERLANEIILNAKEEAEAIVLKAEEEAKELKAKAEKEANDYKRH 63 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999999999999999989999996
No 34
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.11 E-value=0.025 Score=34.75 Aligned_cols=124 Identities=15% Similarity=0.229 Sum_probs=52.7
Q ss_pred EEEECCHHHHHHHHCCHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCCEEEEEEEEEECC
Q ss_conf 4221588785320129899998887-77677775301000001554678877799998886-312346179875343015
Q gi|254780958|r 146 LYVVTDPRLYLFNLENPGETLKQVS-ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKT-MDYYKSGILINTISIEDA 223 (355)
Q Consensus 146 ~yrI~Dp~~~~~~v~~~~~~l~~~~-esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~-l~~y~~GI~V~~V~i~~v 223 (355)
.|.+.||...+.+. .+.+||+.. ...|-+++..+ +++ ...+...+.+.+..- ++-- .++|.++.+..-
T Consensus 75 ~y~v~~~~~~i~~~--~~s~lR~vIG~~~Ld~vl~~R--~~I----~~~v~~~l~~~~~~~GI~V~--~V~I~di~pP~~ 144 (262)
T cd03407 75 FYKLGNPEEQIQSY--VFDVLRARIPKLTLDELFEQK--DEI----AKAVEEELREAMSRYGFEIV--ATLITDIDPDAE 144 (262)
T ss_pred HHHHCCHHHHHHHH--HHHHHHHHHCCCCHHHHHHCH--HHH----HHHHHHHHHHHHHHHCCEEE--EEEEEECCCCHH
T ss_conf 98605899999999--999999896667378887461--879----99999999999986087369--999852599999
Q ss_pred CHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 625--789999999----98878899999999999999877688999999997778999999
Q gi|254780958|r 224 SPP--REVADAFDE----VQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRI 279 (355)
Q Consensus 224 ~~P--~~v~~A~~~----v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~ 279 (355)
--. .++..|-++ +..|+.++++.+.+|++.+.+.+.+|+|+|+..+..|+|.+++.
T Consensus 145 V~~Am~~~~~Aer~r~a~i~~Ae~~~~~~i~~Aeg~ae~~~l~aeg~a~~~~~~A~g~~~~~ 206 (262)
T cd03407 145 VKRAMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESI 206 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999989999977988689999999999999999999878789999
No 35
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.08 E-value=0.024 Score=34.87 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHH-HHHHHH---
Q ss_conf 98878899999999999999877688999999997778999999997232----------------2999-999999---
Q gi|254780958|r 236 VQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQG----------------EADR-FLSIYG--- 295 (355)
Q Consensus 236 v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~g----------------ea~r-f~~i~~--- 295 (355)
|..|+++.++.|.+|+..|..|+.+|+.+|.+|+.+|+..+++.....+. -..+ |...+.
T Consensus 22 Ve~g~~eA~~II~~A~~qA~~Ii~~Ae~eAe~il~~A~keAe~~~~~~~s~L~~A~rqav~aLk~~i~~~if~~~l~~~V 101 (208)
T PRK01005 22 LKPAEDEAGAIVHNAKEQAKRIIEEAQEEAQQIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENKIFRESLVEWL 101 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77899999999999999999999999999999999999999999996799999999999999999999999999999999
Q ss_pred -HHHHCHHHHHHHHHHHHHHHH
Q ss_conf -998699999999999999998
Q gi|254780958|r 296 -QYVNAPTLLRKRIYLETMEGI 316 (355)
Q Consensus 296 -~Y~~ap~vt~~rlylet~~~v 316 (355)
+....|++.+.- -++.++.+
T Consensus 102 ~~~~~d~e~l~~L-I~e~v~~~ 122 (208)
T PRK01005 102 EHVLTDPEVSAKL-VQALVQAI 122 (208)
T ss_pred HHHHCCHHHHHHH-HHHHHHHH
T ss_conf 9986589999999-99999986
No 36
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=97.01 E-value=0.004 Score=40.08 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998776889999999977789999999972322999999999
Q gi|254780958|r 246 FVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYG 295 (355)
Q Consensus 246 ~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~ 295 (355)
-..+|+..|.+|+..|+.+|++|+.+|++.+.++++.|+.+|+++..-+.
T Consensus 21 GVe~g~~eA~~II~~A~~qA~~Ii~~Ae~eAe~il~~A~keAe~~~~~~~ 70 (208)
T PRK01005 21 TLKPAEDEAGAIVHNAKEQAKRIIEEAQEEAQQIIRSAEETADQKLKQGE 70 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77789999999999999999999999999999999999999999999679
No 37
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=96.86 E-value=0.01 Score=37.28 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998776889999999977789999999972322999999
Q gi|254780958|r 247 VEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLS 292 (355)
Q Consensus 247 i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~ 292 (355)
+.+|+..|.+|+.+|+.+|++|+.+|++++.+++..|+.+|..+..
T Consensus 17 Vekg~~eA~~IIa~A~~~A~~Iv~~Ae~eAe~i~~~AekeA~~~k~ 62 (198)
T PRK01558 17 LEEAERLANEIILNAKEEAEAIVLKAEEEAKELKAKAEKEANDYKR 62 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999999999999999999999999998999999
No 38
>TIGR01932 hflC HflC protein; InterPro: IPR010200 HflK and HflC are paralogs encoded by tandem genes in proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. ; GO: 0005515 protein binding, 0008233 peptidase activity, 0016021 integral to membrane.
Probab=96.75 E-value=0.0048 Score=39.53 Aligned_cols=87 Identities=18% Similarity=0.289 Sum_probs=61.4
Q ss_pred EEEEEEEEECCCHHHHHHHHH--HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 798753430156257899999--9998878-------8999999999999998776889999999977789999999972
Q gi|254780958|r 213 ILINTISIEDASPPREVADAF--DEVQRAE-------QDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEA 283 (355)
Q Consensus 213 I~V~~V~i~~v~~P~~v~~A~--~~v~~A~-------qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A 283 (355)
+.+-.|.+.+ ++-+.|-.=| +.-+-|+ .+++.....|+.+..+++++|+.+|.+|+.||+|+++++-+.|
T Consensus 224 V~ikkI~~~~-e~~esi~nRm~~ER~~iA~~~RS~G~~~aee~~~~~~~Ev~~iLseA~~~A~~ikgEgDA~AAK~ysdA 302 (345)
T TIGR01932 224 VRIKKINLSD-ELSESIYNRMRSEREQIARKHRSQGEEKAEELRGKADYEVLKILSEAKRTARIIKGEGDAEAAKIYSDA 302 (345)
T ss_pred EEEECCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9850313788-899999998999999999984436668899998525277887889988735343125769999999987
Q ss_pred HHHHHHHHHHH---HHHHHC
Q ss_conf 32299999999---999869
Q gi|254780958|r 284 QGEADRFLSIY---GQYVNA 300 (355)
Q Consensus 284 ~gea~rf~~i~---~~Y~~a 300 (355)
-|---.|.+.+ .+|+++
T Consensus 303 y~K~PEFy~F~rSL~aYe~~ 322 (345)
T TIGR01932 303 YGKDPEFYSFIRSLEAYEKS 322 (345)
T ss_pred HCCCCCHHHHHHHHHHHHHH
T ss_conf 47895388999999999986
No 39
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=96.30 E-value=0.095 Score=30.90 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q ss_conf 8878899999999999999877688999999997778--------999999997232299
Q gi|254780958|r 237 QRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSI--------AYKDRIIQEAQGEAD 288 (355)
Q Consensus 237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Ae--------ay~~~~i~~A~gea~ 288 (355)
..|+++.+..+.+|++.+..|+.+|+.+|+++...+. ..+.++++.|.-++.
T Consensus 12 ~~A~~ea~~I~~eA~~ea~~I~~~a~~~ae~~~~~~~~~a~~ea~~~~~r~~ssA~Le~r 71 (187)
T PRK02292 12 DEARAEVSEIRAEADERAEEIIAEAEADAKDILGDAEAEAEEDIEQLRQQEISSANLEAK 71 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999999998779999
No 40
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=96.16 E-value=0.077 Score=31.51 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=49.5
Q ss_pred EEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 876344342215887853201298999988877767777530100000155-4678877799998886312346179875
Q gi|254780958|r 139 VGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRS-QRQQIALEVRNLIQKTMDYYKSGILINT 217 (355)
Q Consensus 139 V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~-~R~~i~~~v~~~lq~~l~~y~~GI~V~~ 217 (355)
+.+.+++ .+.|+... -.+... ....++++-..+++.+.+++-|. +|+.+..++...++..++...-.-.|.+
T Consensus 87 Lqv~i~L--~~~d~~~~-~~i~~~----~P~IR~~ll~lls~~~~~~l~t~eGk~~Lr~e~~~~in~~l~~~~g~~~V~~ 159 (168)
T PRK05696 87 VQIKVQL--MVRGSADE-ELAKKH----IPLIENALLMTFSGADVDQLSTPAGKEELRQKALASVQETLQKVTGKPVVEK 159 (168)
T ss_pred EEEEEEE--EECCHHHH-HHHHHH----HHHHHHHHHHHHHCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 9999999--98887689-999875----5889999999996289989609878999999999999999763138875127
Q ss_pred EEEECC
Q ss_conf 343015
Q gi|254780958|r 218 ISIEDA 223 (355)
Q Consensus 218 V~i~~v 223 (355)
|.+.+.
T Consensus 160 VlFT~F 165 (168)
T PRK05696 160 VLFTGF 165 (168)
T ss_pred EEECCC
T ss_conf 853023
No 41
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=96.04 E-value=0.11 Score=30.52 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99877688999999997778
Q gi|254780958|r 254 SNRVLGSARGEASHIRESSI 273 (355)
Q Consensus 254 a~~i~~~A~geA~~i~~~Ae 273 (355)
+.+++.+|+.+|.+++..|+
T Consensus 131 ~~ei~~~A~~eA~~i~e~A~ 150 (201)
T PRK06231 131 KSELEKEANRQANLIIFQAR 150 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 42
>pfam05103 DivIVA DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.
Probab=95.49 E-value=0.21 Score=28.64 Aligned_cols=44 Identities=11% Similarity=0.198 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98878899999999999999877688999999997778999999
Q gi|254780958|r 236 VQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRI 279 (355)
Q Consensus 236 v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~ 279 (355)
...|++..+.++..|+..|..|+.+|+.+|.+|+.+|.....++
T Consensus 69 L~~Aq~~a~~~~~~A~~eA~~ii~eA~~~A~~iv~eA~~~~~~l 112 (131)
T pfam05103 69 LVVAQETAEEVKANAQKEAELIIKEAEAKAERIVNDANEEAKKL 112 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999
No 43
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=95.41 E-value=0.2 Score=28.77 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999877688999999997
Q gi|254780958|r 242 DEDRFVEESNKYSNRVLGSARGEASHIRE 270 (355)
Q Consensus 242 e~er~i~eAe~~a~~i~~~A~geA~~i~~ 270 (355)
+.++...||.+++++|.-+|+.++++|++
T Consensus 57 ~y~~qLaeAr~EAa~IreeAr~~~~~I~a 85 (445)
T PRK13428 57 AHAKAVEDAKAEAHRVVEEARTDAERIAE 85 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999988999999
No 44
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=94.74 E-value=0.34 Score=27.21 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987768899999999777899999999
Q gi|254780958|r 253 YSNRVLGSARGEASHIRESSIAYKDRIIQ 281 (355)
Q Consensus 253 ~a~~i~~~A~geA~~i~~~Aeay~~~~i~ 281 (355)
..++.+.+|+.||++|+.+|....+++++
T Consensus 57 ~y~~qLaeAr~EAa~IreeAr~~~~~I~a 85 (445)
T PRK13428 57 AHAKAVEDAKAEAHRVVEEARTDAERIAE 85 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999988999999
No 45
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.34 Score=27.18 Aligned_cols=123 Identities=17% Similarity=0.210 Sum_probs=58.5
Q ss_pred HHHHCCHHHHHHHH--HHHHHHHHHHCCCCCCCCCC-CHHHH-H--H-HHHHHHHHHHCCCCCEEEEEEEEEECCCHHH-
Q ss_conf 32012989999888--77767777530100000155-46788-7--7-7999988863123461798753430156257-
Q gi|254780958|r 156 LFNLENPGETLKQV--SESAMREVVGRRFAVDIFRS-QRQQI-A--L-EVRNLIQKTMDYYKSGILINTISIEDASPPR- 227 (355)
Q Consensus 156 ~~~v~~~~~~l~~~--~esalR~vvg~~~~d~ilt~-~R~~i-~--~-~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~- 227 (355)
+|.+.|+...+..+ .+.+++..+ +.++-+++.. .-+++ . . .+...+.+.++. +..=..|.+.++..-.
T Consensus 94 ~~rv~d~~~~~~~v~~~~~~i~~~~-~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~---~~~~~Gi~V~~V~i~~i 169 (291)
T COG0330 94 QYRVTDPQKAVYNVENAEAALRQLV-QSALRSVIGRMTLDELLTERRAEINAKIREILDE---AADPWGIKVVDVEIKDI 169 (291)
T ss_pred EEEECCHHHHEEEECCHHHHHHHHH-HHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHH---HHCCCCCEEEEEEEEEC
T ss_conf 9998773774367268899999999-9999999734318887506558899999999997---61258818999888755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999988788999999999999998776889999999977789999999972322999
Q gi|254780958|r 228 EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 (355)
Q Consensus 228 ~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r 289 (355)
..-..+ ..|-.++-+ |+......+-+|+|++++.+..|+|.++..+..|+|++..
T Consensus 170 ~~p~ev---~~a~~~~~~----Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a 224 (291)
T COG0330 170 DPPEEV---QAAMEKQMA----AERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA 224 (291)
T ss_pred CCCHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999---999999999----9999999999978788876544577899999999989877
No 46
>KOG2668 consensus
Probab=94.69 E-value=0.35 Score=27.12 Aligned_cols=66 Identities=14% Similarity=0.182 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q ss_conf 99999988788999999999999998776889999999977789999999972-----3229999999999
Q gi|254780958|r 231 DAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEA-----QGEADRFLSIYGQ 296 (355)
Q Consensus 231 ~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A-----~gea~rf~~i~~~ 296 (355)
++|..-.-|+.++++.+-+|+++|..+.-+-++||.+|-..|.+|+.+.-.+| -|+++....+|.+
T Consensus 290 e~~r~~klaEAnk~~~~~qaqAEA~~irk~geAEA~~ieA~akaeaeqm~~ka~v~~~y~~aa~l~~lLea 360 (428)
T KOG2668 290 EVERETKLAEANKELYNKQAQAEAELIRKQGEAEAFAIEADAKAEAEQMAAKAEVYQAYAQAAYLRTLLEA 360 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999987899999988888999998505788888765554798887778999985566899999998
No 47
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=94.49 E-value=0.39 Score=26.82 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8878899999999999999877688999999
Q gi|254780958|r 237 QRAEQDEDRFVEESNKYSNRVLGSARGEASH 267 (355)
Q Consensus 237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~ 267 (355)
..|+++.+..+.+|++.+..|+.+|+.++.+
T Consensus 13 ~eA~~~a~~Il~eA~~eae~I~~~a~~~a~~ 43 (198)
T PRK03963 13 REAEQKIEYILSEARKEAEKIKEEARRRAEA 43 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999
No 48
>KOG2620 consensus
Probab=94.34 E-value=0.42 Score=26.62 Aligned_cols=49 Identities=10% Similarity=0.069 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8788999999999999998776889999999977789999999972322
Q gi|254780958|r 238 RAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGE 286 (355)
Q Consensus 238 ~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~ge 286 (355)
.++-+|+..|+-||+++...+...+|.+.+.++.|+++++.+++.|+.-
T Consensus 179 esEger~~~InrAEGek~s~iL~seg~~~qr~n~a~Gea~ail~~A~a~ 227 (301)
T KOG2620 179 ESEGERIAQINRAEGEKESKILASEGIARQRQNIADGEAEAILAFADAV 227 (301)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4002667765663022566776558899999988765799999886525
No 49
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=94.27 E-value=0.43 Score=26.52 Aligned_cols=43 Identities=28% Similarity=0.420 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999988788999999999999998776889999999977789
Q gi|254780958|r 232 AFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIA 274 (355)
Q Consensus 232 A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aea 274 (355)
++.....|+...+..|.+|...+.+++..|+.+|..++.+|+.
T Consensus 8 vl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~ 50 (108)
T COG2811 8 VLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEE 50 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999886589999999988998999999889999999999
No 50
>TIGR01933 hflK HflK protein; InterPro: IPR010201 The accumulation of abnormal membrane proteins is something which must be avoided in order to maintain cell viability. In Escherichia coli, the membrane-bound, ATP-dependent protease FtsH plays a central role in the degradation of these abnormal proteins . Known substrates of this protease include several lambda bacteriophage proteins, the heat-shock transcription factor sigma-32, and the unassembled form of the membrane protein SecY. While FtsH is active as a protease on its own, in vivo it forms a complex with a membrane-bound HflKC heterodimer. HflKC has a generally inhibitory effect on the protease activity of FtsH, though the mechanism of this inhibition is not known. The HflK and HflC polypeptides are paralogous, and often encoded by tandem genes within bacterial genomes. This entry represents the HflK subunit of the HflKC heterodimer.; GO: 0005515 protein binding, 0016021 integral to membrane.
Probab=94.12 E-value=0.13 Score=29.94 Aligned_cols=125 Identities=16% Similarity=0.324 Sum_probs=64.9
Q ss_pred EEEECCHH--HHHHHHCCHHHHHHH-HHHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
Q ss_conf 42215887--853201298999988-8777677775301000001554-6788777999988863123461798753430
Q gi|254780958|r 146 LYVVTDPR--LYLFNLENPGETLKQ-VSESAMREVVGRRFAVDIFRSQ-RQQIALEVRNLIQKTMDYYKSGILINTISIE 221 (355)
Q Consensus 146 ~yrI~Dp~--~~~~~v~~~~~~l~~-~~esalR~vvg~~~~d~ilt~~-R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~ 221 (355)
.|+|.+|. ..+-... +.+|+. +..+.|-++++.-.- .++++ ++.++ ++.+...--+.-. +|++-++.-.
T Consensus 98 lf~V~~~~rr~sl~~at--~Salr~~iG~~~~~~iLt~gR~--~i~~~~~~~l~-~~i~~Y~~Gi~v~--~V~~q~A~PP 170 (285)
T TIGR01933 98 LFSVENPERRDSLRQAT--DSALREVIGDSSMDSILTEGRS--QIREDTKERLN-EIIDNYDLGITVV--DVNLQSARPP 170 (285)
T ss_pred CCCCCCCHHHHHHHHHH--HHHHHHHHCCCHHHHHHCCCCH--HHHHHHHHHHH-HHHHHCCCCEEEE--EEEECCCCCC
T ss_conf 13676842556999999--9998654062026787366716--78899999999-9874203863798--6541666887
Q ss_pred C--CC-HHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1--56-25789999999988788999---------------999999999998776889999999977789999
Q gi|254780958|r 222 D--AS-PPREVADAFDEVQRAEQDED---------------RFVEESNKYSNRVLGSARGEASHIRESSIAYKD 277 (355)
Q Consensus 222 ~--v~-~P~~v~~A~~~v~~A~qe~e---------------r~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~ 277 (355)
. |. -=+.|..|.++.++...|.+ |.+.||++|+++++.+|.||+++-..--..|+.
T Consensus 171 ~GeVk~AFdDvi~A~ed~~r~I~EA~~y~n~~~P~A~G~A~r~~~eA~gY~~~~i~~A~G~v~rF~~ll~eY~~ 244 (285)
T TIGR01933 171 EGEVKEAFDDVIAAREDEERYINEAEAYANEVVPKARGRAQRIIEEARGYKEERINRAKGDVARFTKLLAEYKK 244 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20016789999987788999999999876036874227657789999767899898763219999998899862
No 51
>pfam12127 YdfA_immunity SigmaW regulon antibacterial. This protein is found in bacteria. Proteins in this family are about 330 amino acids in length. The operon from which this protein is derived confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=94.03 E-value=0.48 Score=26.21 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=50.6
Q ss_pred HHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75301-00000155467887779999888631234617987534301562578999999998878899999999999999
Q gi|254780958|r 177 VVGRR-FAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSN 255 (355)
Q Consensus 177 vvg~~-~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~ 255 (355)
.+|+. +-.++| ++-+.|+..+. ++-||. ++-.+|.++.|-|++.-+.+-+-. +..+.|.++.+.+|+++..
T Consensus 181 ~IGSa~~hk~VL-EnPd~ISk~VL---~kgLDa-gTAFeIlSIDIADvdVG~NIGA~L---q~dQAeADk~vAqAkAE~R 252 (321)
T pfam12127 181 TIGSADTHKEVL-ENPDSISKTVL---EKGLDA-GTAFEILSIDIADIDVGENIGARL---QTDQAEADKRIAQAKAEER 252 (321)
T ss_pred EECCCCHHHHHH-CCHHHHHHHHH---HCCCCC-CCEEEEEEEEEECCCHHHHHCHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 132623287997-29878799998---536786-851699987542341222225455---1778878789998778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877688999999997778999999997232299
Q gi|254780958|r 256 RVLGSARGEASHIRESSIAYKDRIIQEAQGEAD 288 (355)
Q Consensus 256 ~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~ 288 (355)
+. .|-+.-+.+++..+--+. .+.+||.|..
T Consensus 253 RA--~AvA~EQEm~A~vqemrA-kvVeAEaeVP 282 (321)
T pfam12127 253 RA--MAVAREQEMKAKVQEMRA-KVVEAEAEVP 282 (321)
T ss_pred HH--HHHHHHHHHHHHHHHHHH-HHHHHHHHCH
T ss_conf 99--999998999999999776-7312320152
No 52
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=94.00 E-value=0.49 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=16.6
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 775301000001554678877799998
Q gi|254780958|r 176 EVVGRRFAVDIFRSQRQQIALEVRNLI 202 (355)
Q Consensus 176 ~vvg~~~~d~ilt~~R~~i~~~v~~~l 202 (355)
-.+|...+..+|.+.|+.|...+++.=
T Consensus 42 ~~f~~~~L~~~L~~R~~~I~~~I~eAE 68 (184)
T CHL00019 42 IYFGKGVLSDLLDNRKQRILNTIRNSE 68 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999599999999999999999999999
No 53
>pfam05103 DivIVA DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.
Probab=93.91 E-value=0.51 Score=26.06 Aligned_cols=53 Identities=23% Similarity=0.304 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998776889999999977789999999972322999999999
Q gi|254780958|r 243 EDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYG 295 (355)
Q Consensus 243 ~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~ 295 (355)
-...+..|+.-+..+...|+.+|..|+.+|+..+.+++.+|+.++.+...-+.
T Consensus 65 l~~~L~~Aq~~a~~~~~~A~~eA~~ii~eA~~~A~~iv~eA~~~~~~l~~e~~ 117 (131)
T pfam05103 65 LQKTLVVAQETAEEVKANAQKEAELIIKEAEAKAERIVNDANEEAKKLATEYD 117 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999
No 54
>PRK01194 V-type ATP synthase subunit E; Provisional
Probab=93.90 E-value=0.51 Score=26.04 Aligned_cols=37 Identities=14% Similarity=0.154 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8788999999999999998776889999999977789
Q gi|254780958|r 238 RAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIA 274 (355)
Q Consensus 238 ~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aea 274 (355)
.|+.+..+...||++.+++++.+|+..+..++.++++
T Consensus 13 ~ae~k~k~I~~ea~~ea~~i~~ea~~k~~~i~~~~~~ 49 (185)
T PRK01194 13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEK 49 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7898999999999999999999899999999999999
No 55
>TIGR02926 AhaH ATP synthase archaeal, H subunit; InterPro: IPR014275 A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition to V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases . A-ATPases are composed of two linked complexes: the A1 complex, consisting of seven subunits, contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex, consisting of at least two subunits, forms the membrane-spanning pore . The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C . A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. This entry represents subunit H of the archaeal A-ATPase; it is unclear precisely where subunit H fits into the complex. More information about this protein can be found at Protein of the Month: ATP Synthases ..
Probab=92.51 E-value=0.82 Score=24.66 Aligned_cols=61 Identities=25% Similarity=0.415 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHHHHHHHH
Q ss_conf 998878899999999999999877688999999997778999999----99723--229999999999
Q gi|254780958|r 235 EVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRI----IQEAQ--GEADRFLSIYGQ 296 (355)
Q Consensus 235 ~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~----i~~A~--gea~rf~~i~~~ 296 (355)
.+-.|+.+.+..|.+|...+++++..|+-+|..|+.+|+..+... +..|+ ++..+ ..|+..
T Consensus 3 ~IK~AE~~A~~~i~eA~~~~~~~i~eAr~eA~~l~e~Ae~eA~~~~~e~i~~a~~~i~~E~-~~I~~~ 69 (85)
T TIGR02926 3 EIKKAEEEAEELIEEAKEEREQRIAEAREEAKELLEEAEEEAKKLKEEIIEEAEEEIEKEA-EKILEE 69 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_conf 8899899999998989999986689998998888899889889999888899999999879-998866
No 56
>pfam03748 FliL Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.
Probab=91.97 E-value=0.95 Score=24.24 Aligned_cols=75 Identities=12% Similarity=0.140 Sum_probs=47.2
Q ss_pred EEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 887634434221588785320129899998887776777753010000015-5467887779999888631234617987
Q gi|254780958|r 138 IVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
.+.+.+.+.+ .|+... -.+..... ...+++-.++++.+.+++-+ ++++.+..++++.++..+..- .|.
T Consensus 67 ~l~~~i~l~~--~~~~~~-~~~~~~~p----~Ird~ii~~l~~~~~~dl~~~~g~~~Lk~~l~~~in~~l~~~----~V~ 135 (145)
T pfam03748 67 YLKISIALEV--RDPKAA-EELEKHMP----LIRDAILMLLSSKTAEDLSTPEGKEKLKEELLERINEVLLEG----EVE 135 (145)
T ss_pred EEEEEEEEEE--CCHHHH-HHHHHCCH----HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCC----CEE
T ss_conf 9999999997--688789-98886263----337999999865882121493379999999999999873758----546
Q ss_pred EEEEECC
Q ss_conf 5343015
Q gi|254780958|r 217 TISIEDA 223 (355)
Q Consensus 217 ~V~i~~v 223 (355)
+|.+.+.
T Consensus 136 ~V~ft~f 142 (145)
T pfam03748 136 DVLFTSF 142 (145)
T ss_pred EEEEEEE
T ss_conf 9988850
No 57
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=91.95 E-value=0.96 Score=24.23 Aligned_cols=28 Identities=39% Similarity=0.429 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998776889999999977789
Q gi|254780958|r 247 VEESNKYSNRVLGSARGEASHIRESSIA 274 (355)
Q Consensus 247 i~eAe~~a~~i~~~A~geA~~i~~~Aea 274 (355)
..||++.+.+++.+|+.||++++..+..
T Consensus 81 ~~eAe~er~~ll~~Ar~eae~~r~~~~~ 108 (246)
T TIGR03321 81 KEEAQAERQRLLDEAREEADEIREKWQE 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999
No 58
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=91.17 E-value=1.1 Score=23.70 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998776889999999977789
Q gi|254780958|r 253 YSNRVLGSARGEASHIRESSIA 274 (355)
Q Consensus 253 ~a~~i~~~A~geA~~i~~~Aea 274 (355)
.+.+++.+|+.++.+++..|+.
T Consensus 98 ~~~~~~~~A~~ea~~i~~~A~~ 119 (173)
T PRK13460 98 LKNKLLEETNNEVKAQKDQAVK 119 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 59
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=90.40 E-value=1.3 Score=23.24 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999998776889999999977789
Q gi|254780958|r 241 QDEDRFVEESNKYSNRVLGSARGEASHIRESSIA 274 (355)
Q Consensus 241 qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aea 274 (355)
.+.++...+|+.++.+|+..|+.+|+++..++..
T Consensus 82 aeye~~l~~A~~EA~~Ii~~Ak~~A~~~~~~~~~ 115 (184)
T PRK13455 82 ASYERKQREVQEQADRIVANARDEAQAAAEQAKA 115 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999
No 60
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=90.01 E-value=1.4 Score=23.03 Aligned_cols=74 Identities=9% Similarity=0.113 Sum_probs=45.8
Q ss_pred EEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf 634434221588785320129899998887776777753010000015-5467887779999888631234617987534
Q gi|254780958|r 141 LHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGILINTIS 219 (355)
Q Consensus 141 v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~ 219 (355)
+.+.++..+.|+... -.+...--.|+ +++-......+.+++-+ .++..+..++..+++..+.. -.|.+|.
T Consensus 90 Lk~~i~Lev~~~~~~-~~~~~~~P~Ir----D~i~~~L~~~~~~dL~~~~Gk~~Lr~ell~rin~~l~~----~~V~~Vl 160 (167)
T PRK12785 90 LKVKVVLEVKDEKQV-EQIKPLMPRVT----DLFQTYLRELRSSDLNGSAGLFRLKEELTRRVNVALAP----AQVNAVL 160 (167)
T ss_pred EEEEEEEEECCHHHH-HHHHHHHHHHH----HHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHHHHCCC----CCEEEEE
T ss_conf 999999998888789-99987536799----99999997189989709377999999999999854178----8235998
Q ss_pred EECC
Q ss_conf 3015
Q gi|254780958|r 220 IEDA 223 (355)
Q Consensus 220 i~~v 223 (355)
+++.
T Consensus 161 Ftef 164 (167)
T PRK12785 161 FKEV 164 (167)
T ss_pred EEEE
T ss_conf 9863
No 61
>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]
Probab=89.82 E-value=1.5 Score=22.94 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 878899999999999999877688999999--------9977789999999972322999
Q gi|254780958|r 238 RAEQDEDRFVEESNKYSNRVLGSARGEASH--------IRESSIAYKDRIIQEAQGEADR 289 (355)
Q Consensus 238 ~A~qe~er~i~eAe~~a~~i~~~A~geA~~--------i~~~Aeay~~~~i~~A~gea~r 289 (355)
.|+++.++...+|...+..+..+|..+++. ...+|+.++++++..|.-++.+
T Consensus 14 ~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~ 73 (194)
T COG1390 14 EAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARR 73 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999998999999999999999999999999989999999999999899999
No 62
>PRK13665 hypothetical protein; Provisional
Probab=89.79 E-value=1.5 Score=22.92 Aligned_cols=71 Identities=15% Similarity=0.279 Sum_probs=41.0
Q ss_pred HHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75301-00000155467887779999888631234617987534301562578999999998878899999999999999
Q gi|254780958|r 177 VVGRR-FAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSN 255 (355)
Q Consensus 177 vvg~~-~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~ 255 (355)
.+|+. +-.++| ++-+.|+..+. ++-||. ++-.+|.++.|-|++.-+.+-+-. +..+.|.++.+.+|+++..
T Consensus 182 ~IGSa~~hk~VL-EnPd~ISk~VL---~kgLDa-gTAFeIlSIDIADidVG~NIGA~L---q~dQAeADk~vAqAkAE~R 253 (327)
T PRK13665 182 TIGSSESHKEVL-ENPDSISKTVL---SKGLDA-GTAFEILSIDIADVDIGKNIGAKL---QTDQAEADKNIAQAKAEER 253 (327)
T ss_pred EECCHHHHHHHH-CCHHHHHHHHH---HCCCCC-CCEEEEEEEEEECCCCCCHHCHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 003702588886-29878799999---636786-851699987653442240015344---0677767789999878889
No 63
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=89.24 E-value=1.6 Score=22.65 Aligned_cols=46 Identities=11% Similarity=0.202 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998776889999----99997778999999997232299
Q gi|254780958|r 243 EDRFVEESNKYSNRVLGSARGEA----SHIRESSIAYKDRIIQEAQGEAD 288 (355)
Q Consensus 243 ~er~i~eAe~~a~~i~~~A~geA----~~i~~~Aeay~~~~i~~A~gea~ 288 (355)
.+..+.+|+..+..++.+|+.+| +.++.+|+.+..+.+.+|+.+.+
T Consensus 79 ye~~L~~Ar~Ea~~ii~~A~~~a~~~~~~i~~~A~~ea~~~i~~A~~eIe 128 (156)
T CHL00118 79 YEEQLSKARKEAQLLIAQSQKEAQEIVQEELKQAQKNAESLVEEATKQLE 128 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999
No 64
>pfam06635 NolV Nodulation protein NolV. This family consists of several nodulation protein NolV sequences from different Rhizobium species. The function of this family is unclear.
Probab=89.24 E-value=1.7 Score=22.65 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
Q ss_conf 89999999988788999999999999998776889999999977789999999972322999999999998699999999
Q gi|254780958|r 228 EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKR 307 (355)
Q Consensus 228 ~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~r 307 (355)
...+|+.-+..|+++.++.+.+|.+-..+. +++|-.+-+. ++..+..+.|++..++..+|...++. .-|++
T Consensus 28 ~w~da~~~ieAA~~~A~~vr~~A~~ayE~~--r~~Gye~G~~-~g~~E~A~li~qt~ae~~~y~a~lE~--~l~~l---- 98 (207)
T pfam06635 28 IWDDAAKACAAAERHLQHVRGWARAAYERE--LAQGHAEGAK-AGAEEMAALIAQATAELAQRKAVLEQ--ELPQL---- 98 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH----
T ss_conf 897699999999999999999999999999--9988999999-99999999999999999999999999--99999----
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999998379
Q gi|254780958|r 308 IYLETMEGILKK 319 (355)
Q Consensus 308 lylet~~~vl~~ 319 (355)
-|+++.+||+.
T Consensus 99 -Vle~vRkiLg~ 109 (207)
T pfam06635 99 -VFEILRDLLGA 109 (207)
T ss_pred -HHHHHHHHHHC
T ss_conf -99999999860
No 65
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=88.15 E-value=1.9 Score=22.18 Aligned_cols=80 Identities=10% Similarity=0.171 Sum_probs=50.8
Q ss_pred EEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 18876344342215887853201298999988877767777530100000155-46788777999988863123461798
Q gi|254780958|r 137 NIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRS-QRQQIALEVRNLIQKTMDYYKSGILI 215 (355)
Q Consensus 137 n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~-~R~~i~~~v~~~lq~~l~~y~~GI~V 215 (355)
..+.+.+++. ..|+..- -.+... ....++++-..+++.+.+++-+. ||+.+..++.+.++..+..-.---.|
T Consensus 76 ryLqv~i~L~--~~d~~~~-~~l~~~----~P~Ird~ll~lls~~~~~dL~t~eGk~~L~~ei~~~vn~~l~~~~~~~~V 148 (159)
T PRK07021 76 RVLYIGLTLR--LKDEATR-ERLKEY----LPEVRSRLLLLLSRKHAAELATEEGKQKLAAEIKETLEQPLVPGQPKQVV 148 (159)
T ss_pred EEEEEEEEEE--ECCHHHH-HHHHHC----CHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 5999999999--7687789-899860----74789999999854998896498899999999999999987456888834
Q ss_pred EEEEEECC
Q ss_conf 75343015
Q gi|254780958|r 216 NTISIEDA 223 (355)
Q Consensus 216 ~~V~i~~v 223 (355)
.+|.+.+.
T Consensus 149 ~~VlFT~F 156 (159)
T PRK07021 149 TDVLFTAF 156 (159)
T ss_pred EEEEEEEE
T ss_conf 58921440
No 66
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=86.55 E-value=2.4 Score=21.58 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788999999999999998776889999999977789999
Q gi|254780958|r 239 AEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKD 277 (355)
Q Consensus 239 A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~ 277 (355)
+.++.+....+|+..+..++..|+.+|..++.++...+.
T Consensus 55 ~~~e~e~~l~~A~~ea~~Ii~~A~~~a~~~~~~~~~~a~ 93 (159)
T PRK09173 55 LLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTE 93 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999
No 67
>pfam06188 HrpE HrpE protein. This family consists of several bacterial HrpE proteins. The exact function of this family is unknown but it is thought that HrpE is involved in the secretion of HrpZ (harpinPss).
Probab=85.52 E-value=2.7 Score=21.25 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998776889999999977789999999972322
Q gi|254780958|r 254 SNRVLGSARGEASHIRESSIAYKDRIIQEAQGE 286 (355)
Q Consensus 254 a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~ge 286 (355)
+..++.+|+..|+.|+.+|++.+......++..
T Consensus 32 A~~il~~Ar~QA~~il~~a~~~ae~~~~~~~eq 64 (191)
T pfam06188 32 ARTLLEDARQQAEQILDLAEEKAEALQQRAEEQ 64 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999989999
No 68
>CHL00167 consensus
Probab=85.32 E-value=2.7 Score=21.19 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=16.9
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 77530100000155467887779999
Q gi|254780958|r 176 EVVGRRFAVDIFRSQRQQIALEVRNL 201 (355)
Q Consensus 176 ~vvg~~~~d~ilt~~R~~i~~~v~~~ 201 (355)
-.+|+-.+..+|.+.|+.|...+++.
T Consensus 44 ~~fg~~~L~~~L~~Rke~I~~~I~eA 69 (182)
T CHL00167 44 IYLGKNFLGSSLEERQQKVLEAIQES 69 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99846768989999999999999999
No 69
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=85.24 E-value=2.8 Score=21.16 Aligned_cols=75 Identities=11% Similarity=0.189 Sum_probs=47.3
Q ss_pred EEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 887634434221588785320129899998887776777753010000015-5467887779999888631234617987
Q gi|254780958|r 138 IVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
.+.+.+.+. +.|+... -.+.... ...++++-.+++..+.+++-+ ++|+.+..+++..++..|.. | .|.
T Consensus 102 ylq~~i~l~--~~~~~~~-~~~~~~~----p~ird~ii~~ls~~~~~~l~~~~Gk~~Lr~ei~~~in~~l~~---~-~V~ 170 (180)
T PRK08455 102 YLKTSISLE--LSNELLK-PELDKKD----PVIRDTIIRILSSKTVEEVSTNKGKERLKDEIVGKLNEFLID---G-FIK 170 (180)
T ss_pred EEEEEEEEE--ECCHHHH-HHHHHHH----HHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHCC---C-CEE
T ss_conf 899999999--8688889-9999866----999999999996499989509778999999999999987367---9-557
Q ss_pred EEEEECC
Q ss_conf 5343015
Q gi|254780958|r 217 TISIEDA 223 (355)
Q Consensus 217 ~V~i~~v 223 (355)
+|.+.++
T Consensus 171 ~V~Ft~f 177 (180)
T PRK08455 171 NVFFTDF 177 (180)
T ss_pred EEEEEEE
T ss_conf 9984241
No 70
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=84.11 E-value=3.1 Score=20.84 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 878899999999999999877688999999----99777899999999723229
Q gi|254780958|r 238 RAEQDEDRFVEESNKYSNRVLGSARGEASH----IRESSIAYKDRIIQEAQGEA 287 (355)
Q Consensus 238 ~A~qe~er~i~eAe~~a~~i~~~A~geA~~----i~~~Aeay~~~~i~~A~gea 287 (355)
.+.++.+..+.+|+..+..++.+|+.++.+ .+.+++++..+.+.+|+.+-
T Consensus 83 ~~~~~ye~~L~~Ar~eA~~ii~eAr~~a~~~~~~~~~~a~~el~~~i~~AE~~I 136 (181)
T PRK13454 83 EAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRI 136 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999999999
No 71
>PRK09098 type III secretion system protein HrpB; Validated
Probab=83.60 E-value=3.2 Score=20.70 Aligned_cols=29 Identities=28% Similarity=0.402 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78899999999999999877688999999
Q gi|254780958|r 239 AEQDEDRFVEESNKYSNRVLGSARGEASH 267 (355)
Q Consensus 239 A~qe~er~i~eAe~~a~~i~~~A~geA~~ 267 (355)
|+++.++.+.+|.+.+..|+..|+.|+++
T Consensus 48 Ar~eA~~Il~~Ar~~A~~I~~~Ar~e~e~ 76 (229)
T PRK09098 48 ARDRAERIAAEARAQAEALLEDARREADR 76 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999
No 72
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=83.50 E-value=3.3 Score=20.67 Aligned_cols=37 Identities=11% Similarity=0.295 Sum_probs=16.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87889999999----99999998776889999999977789
Q gi|254780958|r 238 RAEQDEDRFVE----ESNKYSNRVLGSARGEASHIRESSIA 274 (355)
Q Consensus 238 ~A~qe~er~i~----eAe~~a~~i~~~A~geA~~i~~~Aea 274 (355)
.|+++....+. +|+....+++.+|+.+|++++.+|+.
T Consensus 81 ~a~~ea~~Ii~~A~~~Ae~~~~~~~~~A~~ea~~i~~~A~~ 121 (173)
T PRK13453 81 ETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQS 121 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999
No 73
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=83.13 E-value=3.4 Score=20.58 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=8.4
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 0000015546788777999
Q gi|254780958|r 182 FAVDIFRSQRQQIALEVRN 200 (355)
Q Consensus 182 ~~d~ilt~~R~~i~~~v~~ 200 (355)
.+..+|...++.|..++.+
T Consensus 43 pi~~~L~~R~~~I~~~l~~ 61 (174)
T PRK07352 43 FLGKILERRREAILQALKE 61 (174)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 74
>pfam11978 MVP_shoulder Shoulder domain. This domain is found in the Major Vault Protein and has been called the shoulder domain. This family includes two bacterial proteins, which suggests that some bacteria may possess vault particles.
Probab=81.05 E-value=4 Score=20.08 Aligned_cols=91 Identities=19% Similarity=0.263 Sum_probs=58.3
Q ss_pred ECCCEEEEEEEEEEEE--E--CCHH--HHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----
Q ss_conf 0684188763443422--1--5887--8532012989999888777677775301000001554678877799998----
Q gi|254780958|r 133 TGDQNIVGLHFSVLYV--V--TDPR--LYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLI---- 202 (355)
Q Consensus 133 T~D~n~V~v~~~V~yr--I--~Dp~--~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~l---- 202 (355)
|.|-..+.+.++..|. + .||. .-+|++.|.-.-+-...-|-+|..|++.+.++.....-.-|.+.|...=
T Consensus 13 T~DhArL~l~LsYnw~F~v~~~~~~d~~k~FsV~DFvgd~Ck~iaSrIR~aVa~~~Fd~FHkns~~iiR~aVFg~~~~~~ 92 (118)
T pfam11978 13 TSDHARLQLQLSYNWHFDVDRDDPADAQKWFSVPDFVGDACKAIASRIRGAVASVTFDDFHKNSAKIIRQAVFGADEKGE 92 (118)
T ss_pred ECCCEEEEEEEEEEEEEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHCCCCCCCC
T ss_conf 53530378889888778757787145877527741889999999999999985387879752688899988438698887
Q ss_pred -HH--HHCCCCCEEEEEEEEEECCCH
Q ss_conf -88--631234617987534301562
Q gi|254780958|r 203 -QK--TMDYYKSGILINTISIEDASP 225 (355)
Q Consensus 203 -q~--~l~~y~~GI~V~~V~i~~v~~ 225 (355)
.. ..+. -|+.|.+|.++.+.|
T Consensus 93 ~r~~~~F~~--N~lvIt~VDVqsvEp 116 (118)
T pfam11978 93 TRDGLRFEA--NGLVITSVDVQSVEP 116 (118)
T ss_pred CCCCEEEEC--CCEEEEEEEEEEECC
T ss_conf 256428705--886999864346523
No 75
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=81.00 E-value=4 Score=20.07 Aligned_cols=65 Identities=20% Similarity=0.380 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q ss_conf 9999998878899999999999999877688999999----9977789999999972--3229999999999
Q gi|254780958|r 231 DAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASH----IRESSIAYKDRIIQEA--QGEADRFLSIYGQ 296 (355)
Q Consensus 231 ~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~----i~~~Aeay~~~~i~~A--~gea~rf~~i~~~ 296 (355)
+-+.+++.|+.+.+..|..|...|..|+-+|+-+|.+ ++..|+..++..|.++ +||-+. ..|+.+
T Consensus 6 dvik~Iv~AEk~AeeRIE~Ak~eAK~Ii~kAkeEAk~iEeeii~kAeeea~~lIE~kk~EGE~EA-kKi~ee 76 (106)
T PRK08404 6 DVLREIVKAERLAEERIERAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKLEGEEEA-KKILEE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHH
T ss_conf 99999999888799999988888999999989999987999999999999999999887027889-999998
No 76
>PRK00106 hypothetical protein; Provisional
Probab=80.06 E-value=4.3 Score=19.87 Aligned_cols=10 Identities=30% Similarity=0.321 Sum_probs=3.9
Q ss_pred EECHHHHHHC
Q ss_conf 4034797202
Q gi|254780958|r 334 YLPLNEAFSR 343 (355)
Q Consensus 334 yLpl~~~~~~ 343 (355)
.||-|++-.+
T Consensus 230 ~Lp~demKGR 239 (535)
T PRK00106 230 HLPDDNMKGR 239 (535)
T ss_pred ECCCHHHHCC
T ss_conf 5597787552
No 77
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=78.55 E-value=4.8 Score=19.56 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999998776889999999977789
Q gi|254780958|r 250 SNKYSNRVLGSARGEASHIRESSIA 274 (355)
Q Consensus 250 Ae~~a~~i~~~A~geA~~i~~~Aea 274 (355)
|+....+++.+|+.++++++.+|+.
T Consensus 84 A~~~~~~i~~~A~~ea~~i~~~A~~ 108 (159)
T PRK13461 84 AENVYEEIVKEAHEEAESIIERAKL 108 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999
No 78
>TIGR01144 ATP_synt_b ATP synthase F0, B subunit; InterPro: IPR005864 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis . These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0046933 hydrogen ion transporting ATP synthase activity rotational mechanism, 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0016469 proton-transporting two-sector ATPase complex.
Probab=77.40 E-value=5.2 Score=19.35 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 7789999999972322
Q gi|254780958|r 271 SSIAYKDRIIQEAQGE 286 (355)
Q Consensus 271 ~Aeay~~~~i~~A~ge 286 (355)
+|+.++.+++..|+.|
T Consensus 84 ~A~~e~~ki~~~A~~E 99 (147)
T TIGR01144 84 EAREEREKILASARAE 99 (147)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9898899999988445
No 79
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=76.22 E-value=5.6 Score=19.14 Aligned_cols=45 Identities=18% Similarity=0.201 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999877688999999----9977789999999972322
Q gi|254780958|r 242 DEDRFVEESNKYSNRVLGSARGEASH----IRESSIAYKDRIIQEAQGE 286 (355)
Q Consensus 242 e~er~i~eAe~~a~~i~~~A~geA~~----i~~~Aeay~~~~i~~A~ge 286 (355)
+.++.+.+|...+..++..|+.+|.+ ++.+|+....+.+.+|+.+
T Consensus 61 e~e~~l~~Ar~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~A~~~ 109 (140)
T PRK07353 61 QYEQQLASARKQAQQVIAEAEAEADKLYAEALAEAQAEAQASKEKARRE 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999
No 80
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=75.06 E-value=6 Score=18.94 Aligned_cols=74 Identities=16% Similarity=0.214 Sum_probs=50.0
Q ss_pred EEEEEEEEEEEECCHHHHHHHHCCHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 887634434221588785320129899998-8877767777530100000155467887779999888631234617987
Q gi|254780958|r 138 IVGLHFSVLYVVTDPRLYLFNLENPGETLK-QVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILIN 216 (355)
Q Consensus 138 ~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~-~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~ 216 (355)
.| ++..+-|-=+|..... |-..+ -....-+|+++++++.+++- ++++|..+++.+++..|..= +|.
T Consensus 99 ~V-v~~aLGY~~n~k~l~~------EL~~R~v~lkD~i~~yfs~kT~~ELr--ne~qiK~EIk~~IN~IL~~g----kIk 165 (177)
T PRK06654 99 FV-VKLALGYAENNVNILQ------ELGRQKVRLKDIIREYFSQRTGQEIK--NESQIKAEIKARINSILRNG----EIK 165 (177)
T ss_pred EE-EEEEECCCCCCHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCC----CEE
T ss_conf 89-9987424678877999------99764858999999998451099875--18999999999999887428----600
Q ss_pred EEEEECCC
Q ss_conf 53430156
Q gi|254780958|r 217 TISIEDAS 224 (355)
Q Consensus 217 ~V~i~~v~ 224 (355)
+|.+...|
T Consensus 166 dI~FTq~d 173 (177)
T PRK06654 166 EIALTQID 173 (177)
T ss_pred EEEEEEEE
T ss_conf 69876654
No 81
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=73.33 E-value=6.6 Score=18.66 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=10.7
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 53010000015546788777999
Q gi|254780958|r 178 VGRRFAVDIFRSQRQQIALEVRN 200 (355)
Q Consensus 178 vg~~~~d~ilt~~R~~i~~~v~~ 200 (355)
+|...+...|.+.|..|..++.+
T Consensus 44 f~~kpi~~~l~~R~~~I~~~L~e 66 (170)
T PRK08475 44 FAAKPIKNFYKSRINSISKRLEE 66 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 92878999999899999999999
No 82
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=71.18 E-value=7.3 Score=18.34 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999877688999999----997778999999997232
Q gi|254780958|r 245 RFVEESNKYSNRVLGSARGEASH----IRESSIAYKDRIIQEAQG 285 (355)
Q Consensus 245 r~i~eAe~~a~~i~~~A~geA~~----i~~~Aeay~~~~i~~A~g 285 (355)
....+|+.++..|+..|+.+|.. ++.+|+.+..+.+..|+.
T Consensus 65 ~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~~a~~ 109 (161)
T COG0711 65 QELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEAAEA 109 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999998999999999999999999999
No 83
>PRK05697 flagellar basal body-associated protein FliL-like protein; Validated
Probab=70.81 E-value=7.5 Score=18.29 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=49.7
Q ss_pred EEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEE-EEEEE
Q ss_conf 634434221588785320129899998887776777753010000015-5467887779999888631234617-98753
Q gi|254780958|r 141 LHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGI-LINTI 218 (355)
Q Consensus 141 v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI-~V~~V 218 (355)
+.+.|.-++.|+...- .++.+ ....++++-..+|+.+.+++-| +||+++..++.+.+++.+..- .|- .|.+|
T Consensus 54 lqv~v~Lmv~d~~~~~-~le~H----~PlIR~~li~lls~qt~~~l~t~eGre~Lr~e~l~~vn~~l~~e-tG~~~Ve~V 127 (135)
T PRK05697 54 VKIDVELMVKDPDDLA-AVEHH----DPLIRNALVELLGQQTEDKVKSLTGREEIRQECLKQVNELLEQE-TGKPLVVDL 127 (135)
T ss_pred EEEEEEEEECCHHHHH-HHHHH----CHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHH-HCCCCEEEE
T ss_conf 9999999987875689-99970----76899999999854998796598789999999999999999863-186643467
Q ss_pred EEECC
Q ss_conf 43015
Q gi|254780958|r 219 SIEDA 223 (355)
Q Consensus 219 ~i~~v 223 (355)
.+.+.
T Consensus 128 lFT~f 132 (135)
T PRK05697 128 LFTKY 132 (135)
T ss_pred EEECC
T ss_conf 50003
No 84
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=70.23 E-value=7.7 Score=18.21 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q ss_conf 88788999999999999998776889999999977----789999999972322
Q gi|254780958|r 237 QRAEQDEDRFVEESNKYSNRVLGSARGEASHIRES----SIAYKDRIIQEAQGE 286 (355)
Q Consensus 237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~----Aeay~~~~i~~A~ge 286 (355)
..+.++.++.+.+|+..+..++.+|+.++.....+ ++++-.+.+..|+.+
T Consensus 104 e~~~a~Ye~~LaeAR~eA~~Ii~~Ar~~a~~~~e~~~a~~ea~L~~kia~AE~~ 157 (204)
T PRK09174 104 DAAVAAYEQELAQARSKAASIAQAAREAAKAKAEAERAEIEASLEKKLKEAEER 157 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999999999999999999999999999999
No 85
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=69.40 E-value=8 Score=18.09 Aligned_cols=34 Identities=35% Similarity=0.421 Sum_probs=19.3
Q ss_pred CEEEE---E-CCCCEEEEECHHHHHHCCCCCCCHHHCC
Q ss_conf 59999---6-7998475403479720245655501003
Q gi|254780958|r 321 KKVII---D-KKQSVMPYLPLNEAFSRIQTKREIRWYQ 354 (355)
Q Consensus 321 ~k~ii---~-~~~~~~~yLpl~~~~~~~~~~~~~~~~~ 354 (355)
..+|| | .++-.+|||+|++=++..-.-+-+|||.
T Consensus 328 ~pviiRTlDiGGDK~lpyl~lp~E~NPfLG~RaIRl~l 365 (574)
T COG1080 328 KPVIIRTLDIGGDKPLPYLNLPKEENPFLGYRAIRLSL 365 (574)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 92699800467888699898864337213368999853
No 86
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=69.15 E-value=8.1 Score=18.06 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 889999999999999987768899
Q gi|254780958|r 240 EQDEDRFVEESNKYSNRVLGSARG 263 (355)
Q Consensus 240 ~qe~er~i~eAe~~a~~i~~~A~g 263 (355)
+.+.+..+.+|+.++++++.+|+.
T Consensus 61 ~~e~e~~L~~Ar~ea~~ii~~A~~ 84 (141)
T PRK08476 61 NAEIEAILKNAREEANKIRQEAIA 84 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 87
>pfam00430 ATP-synt_B ATP synthase B/B' CF(0). Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006
Probab=68.61 E-value=8.3 Score=17.99 Aligned_cols=45 Identities=16% Similarity=0.348 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999987768899999----99977789999999972322
Q gi|254780958|r 242 DEDRFVEESNKYSNRVLGSARGEAS----HIRESSIAYKDRIIQEAQGE 286 (355)
Q Consensus 242 e~er~i~eAe~~a~~i~~~A~geA~----~i~~~Aeay~~~~i~~A~ge 286 (355)
+.+..+.+|+..+..++..|+.+|. .++.+|+.+..+.+..|+.+
T Consensus 55 ~~e~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~ 103 (132)
T pfam00430 55 EAEQQLAQARAEASEIINNAKKEAQKLKEEILAEAQKDAERLLESARAE 103 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999
No 88
>TIGR01107 Na_K_ATPase_bet Na+/K+ ATPase, beta subunit; InterPro: IPR000402 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the beta subunit found in the P-type cation exchange ATPases located in the plasma membranes of animal cells. These P-ATPases include both H^+/K^+-ATPases (3.6.3.10 from EC) and Na^+/K^+-ATPases (3.6.3.9 from EC), which belong to the IIC subfamily of ATPases , . These ATPases catalyse the hydrolysis of ATP coupled with the exchange of cations, pumping one cation out of the cell (H^+ or Na^+) in exchange for K^+. These ATPases contain an alpha subunit (IPR005775 from INTERPRO) that is the catalytic component, and a glycosylated beta subunit that regulates the number of sodium pumps transported to the plasma membrane through the assembly of alpha/beta heterodimers. The beta subunit has three highly conserved disulphide bonds within the extracellular domain that stabilize the alpha subunit, the alpha/beta interaction, and the catalytic activity of the alpha subunit . Different beta isoforms exist, permitting greater regulatory control. An example of a H^+/K^+-ATPase is the gastric pump responsible for acid secretion in the stomach, transporting protons from the cytoplasm of parietal cells to create a large pH gradient in exchange for the internalization of potassium ions, using ATP hydrolysis to drive the pump . More information about this protein can be found at Protein of the Month: ATP Synthases . ; GO: 0005391 sodium:potassium-exchanging ATPase activity, 0006813 potassium ion transport, 0006814 sodium ion transport, 0016020 membrane.
Probab=68.03 E-value=8.5 Score=17.91 Aligned_cols=53 Identities=23% Similarity=0.274 Sum_probs=33.8
Q ss_pred HHHCCCCCCCCCEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHH
Q ss_conf 33113555898366457532368722048999826722114766503660684188763443422158878532012989
Q gi|254780958|r 84 GKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPG 163 (355)
Q Consensus 84 Gk~~~~v~~pGlh~~~ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~ 163 (355)
=+|.+.+..|||-..|-+... ...-+.|+|+||..|---|.+..
T Consensus 71 P~YQDrva~PGL~~~P~~~Ge------------------------------------~~~ei~f~~sdp~sY~~yv~~L~ 114 (317)
T TIGR01107 71 PKYQDRVAPPGLTVRPKVYGE------------------------------------EKLEISFSVSDPSSYEKYVKDLK 114 (317)
T ss_pred CCCCCCCCCCCCEECCCCCCC------------------------------------CCCEEEEECCCCHHHHHHHHHHH
T ss_conf 973440388983154644676------------------------------------43217898488721789999999
Q ss_pred HHHHHHHHH
Q ss_conf 999888777
Q gi|254780958|r 164 ETLKQVSES 172 (355)
Q Consensus 164 ~~l~~~~es 172 (355)
..|..-..|
T Consensus 115 ~FL~~Y~~S 123 (317)
T TIGR01107 115 KFLKPYNDS 123 (317)
T ss_pred HHHHHCCHH
T ss_conf 975301102
No 89
>TIGR01147 V_ATP_synt_G V-type ATPase, G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation..
Probab=67.66 E-value=8.7 Score=17.86 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998878899999999999999877688999999997778999999
Q gi|254780958|r 233 FDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRI 279 (355)
Q Consensus 233 ~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~ 279 (355)
+.--..|+.++--.+++|..|+++.+-+|+-||+. |=|.|+.+.
T Consensus 9 Iq~LL~AEKrAaekVseARkrk~~RlKqAK~EA~~---EvE~Yk~Qr 52 (114)
T TIGR01147 9 IQQLLQAEKRAAEKVSEARKRKQKRLKQAKEEAQK---EVEKYKQQR 52 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_conf 99899999999898899999887887888999999---899988878
No 90
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=63.78 E-value=10 Score=17.38 Aligned_cols=31 Identities=16% Similarity=0.171 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999987768899999999777899
Q gi|254780958|r 245 RFVEESNKYSNRVLGSARGEASHIRESSIAY 275 (355)
Q Consensus 245 r~i~eAe~~a~~i~~~A~geA~~i~~~Aeay 275 (355)
....+|+..+.+++.+|+.++++++.+|++.
T Consensus 78 ~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~ 108 (156)
T PRK05759 78 QAKKRAAQIIEEAKAEAEAEAARIKAQAQAE 108 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999
No 91
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular; InterPro: IPR010915 This entry represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting..
Probab=63.33 E-value=10 Score=17.35 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC----CEEEEE
Q ss_conf 999999972322-9999999999986999999999999999983799----599996
Q gi|254780958|r 275 YKDRIIQEAQGE-ADRFLSIYGQYVNAPTLLRKRIYLETMEGILKKA----KKVIID 326 (355)
Q Consensus 275 y~~~~i~~A~ge-a~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~~----~k~ii~ 326 (355)
+.-.-..+..|+ |+.-...|+||-.-=|+|.+= ||+|.+.|..+- .|.+.+
T Consensus 280 ~~~~~LvkgDg~~Ad~H~~FYDEYLaVmDmtAEF-YLqTi~~VF~q~~Lp~G~~~~~ 335 (414)
T TIGR01849 280 DFFAHLVKGDGDEADKHRKFYDEYLAVMDMTAEF-YLQTIDVVFQQFLLPKGKFIVE 335 (414)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHCCCCCEEEC
T ss_conf 9999862375257788876312453205450344-5548999986531447716788
No 92
>pfam03179 V-ATPase_G Vacuolar (H+)-ATPase G subunit. This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialized cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.
Probab=60.93 E-value=11 Score=17.05 Aligned_cols=39 Identities=26% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999988788999999999999998776889999999977
Q gi|254780958|r 233 FDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRES 271 (355)
Q Consensus 233 ~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~ 271 (355)
+..-..|+.++...+++|..++.+.+-+|+.||++-+.+
T Consensus 6 IQqLL~AEk~A~~iV~~AR~~k~~rLKqAK~EA~~EI~~ 44 (105)
T pfam03179 6 IQQLLQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEE 44 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999998788899999999999
No 93
>PRK06328 type III secretion system protein; Validated
Probab=57.28 E-value=13 Score=16.64 Aligned_cols=26 Identities=12% Similarity=0.385 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98878899999999999999877688
Q gi|254780958|r 236 VQRAEQDEDRFVEESNKYSNRVLGSA 261 (355)
Q Consensus 236 v~~A~qe~er~i~eAe~~a~~i~~~A 261 (355)
+..|++++++++.+|+..+.++..+|
T Consensus 35 lE~Ak~~Ae~~~~ea~~e~e~~~eea 60 (223)
T PRK06328 35 LEKTKEDSEAYTQETHEECAELREEA 60 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999
No 94
>COG4864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.22 E-value=14 Score=16.53 Aligned_cols=105 Identities=16% Similarity=0.280 Sum_probs=48.1
Q ss_pred HHHHHHHCCCC-CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67777530100-00015546788777999988863123461798753430156257899999999887889999999999
Q gi|254780958|r 173 AMREVVGRRFA-VDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESN 251 (355)
Q Consensus 173 alR~vvg~~~~-d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe 251 (355)
.+-+.+|+.+- .++| ++-+.|+..+++ +-|+. .+..+|.++.|-+++....+..-. +..+|..|++ +.+|.
T Consensus 177 givstigss~~h~~vl-enpd~isktvl~---kgld~-gtafeilsidiadvdigkniga~l-qteqa~adk~--iaqak 248 (328)
T COG4864 177 GIVSTIGSSDEHTKVL-ENPDSISKTVLE---KGLDS-GTAFEILSIDIADVDIGKNIGAKL-QTEQAEADKN--IAQAK 248 (328)
T ss_pred CEEECCCCCCCHHHHH-CCCCHHHHHHHH---CCCCC-CCEEEEEEEEEECCCCCCCCCCCC-CHHHHHHHHH--HHHHH
T ss_conf 0012247774144675-092277799997---06787-841699986400221330004212-3566654367--99877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999877688999999997778999999997232299
Q gi|254780958|r 252 KYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEAD 288 (355)
Q Consensus 252 ~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~ 288 (355)
+.+..+.|-+.-+.++..-+--+.+ +.+|+.|..
T Consensus 249 --aeerramava~eqemrarveemrak-vveaeaevp 282 (328)
T COG4864 249 --AEERRAMAVALEQEMRARVEEMRAK-VVEAEAEVP 282 (328)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCC
T ss_conf --8888888998889999889998888-887521264
No 95
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=55.22 E-value=14 Score=16.42 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=48.1
Q ss_pred CCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 841887634434221588785320129899998887776777753010000015-5467887779999888631234617
Q gi|254780958|r 135 DQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR-SQRQQIALEVRNLIQKTMDYYKSGI 213 (355)
Q Consensus 135 D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt-~~R~~i~~~v~~~lq~~l~~y~~GI 213 (355)
|...+.+.+.+.. .|+. ..-++....-.+++ ++-...+..+.+++-+ +|+..+..+++++++..|.. |
T Consensus 61 ~~rylkv~i~le~--~~~~-~~~El~~r~pqIrD----~Ii~~Ls~kt~~dl~~~~Gk~~Lk~ei~~~iN~~l~~---G- 129 (142)
T PRK07718 61 SGNFIRISFKIET--DSKK-AKEELEKRDFQVKD----IIISELAEMNAEDLEGKKGLEKLKEQLKEKINNLMQE---G- 129 (142)
T ss_pred CCCEEEEEEEEEE--CCHH-HHHHHHHCCHHHHH----HHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHCCC---C-
T ss_conf 9967999999998--8988-99776651425699----9999997499979459778999999999999864678---9-
Q ss_pred EEEEEEEECC
Q ss_conf 9875343015
Q gi|254780958|r 214 LINTISIEDA 223 (355)
Q Consensus 214 ~V~~V~i~~v 223 (355)
.|.+|-+.+.
T Consensus 130 ~V~~VyfT~f 139 (142)
T PRK07718 130 KVKKVYITSF 139 (142)
T ss_pred CEEEEEEEEE
T ss_conf 4699998876
No 96
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=54.72 E-value=15 Score=16.37 Aligned_cols=28 Identities=0% Similarity=0.091 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 9899999999872116887764379999
Q gi|254780958|r 29 DVEAIIRYIKDKFDLIPFFKSYGSVYII 56 (355)
Q Consensus 29 dlde~~~~~~~~~~~~~~~~~~~~i~ii 56 (355)
+|.+++.++++.+++++.......++++
T Consensus 4 ~l~~~~~~~~~~~~~l~~~qki~l~~~~ 31 (540)
T PRK06007 4 KLKELMEKLLEFLKKLSKLRKIALIGAA 31 (540)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 8999999999999706988899999999
No 97
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=54.53 E-value=15 Score=16.35 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887889999999999999987768899999999777
Q gi|254780958|r 237 QRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESS 272 (355)
Q Consensus 237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~A 272 (355)
..|..+...++.+|.+.+.+++..|..+|.++...|
T Consensus 84 ~~a~~ea~~il~~a~~~a~~v~~~a~~~a~~~~~~a 119 (212)
T COG3599 84 QAAEAEADDILKRASAQAQRVFGKAQYKADRYLEDA 119 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 877768999999999889999876698899888888
No 98
>KOG1772 consensus
Probab=53.75 E-value=15 Score=16.27 Aligned_cols=39 Identities=31% Similarity=0.304 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999988788999999999999998776889999999977
Q gi|254780958|r 233 FDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRES 271 (355)
Q Consensus 233 ~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~ 271 (355)
+.....|+.++...+++|..+..+.+-.|+-||.+-+.+
T Consensus 8 IqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~ 46 (108)
T KOG1772 8 IQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEE 46 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999898888878899999999
No 99
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=52.91 E-value=15 Score=16.30 Aligned_cols=12 Identities=25% Similarity=0.099 Sum_probs=5.0
Q ss_pred EEEEEEEEECCC
Q ss_conf 798753430156
Q gi|254780958|r 213 ILINTISIEDAS 224 (355)
Q Consensus 213 I~V~~V~i~~v~ 224 (355)
+.|.....+.||
T Consensus 674 ~~iLGTS~~~ID 685 (1089)
T TIGR01369 674 VPILGTSPESID 685 (1089)
T ss_pred CEEECCCHHHHH
T ss_conf 317368857875
No 100
>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family; InterPro: IPR012842 This entry is related to IPR009335 from INTERPRO, but is broader. IPR009335 from INTERPRO describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This entry also includes the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This entry excludes the related protein FliH of the bacterial flagellar apparatus (see IPR000563 from INTERPRO)..
Probab=51.40 E-value=16 Score=16.03 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 887889999999999999987768899999999
Q gi|254780958|r 237 QRAEQDEDRFVEESNKYSNRVLGSARGEASHIR 269 (355)
Q Consensus 237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~ 269 (355)
..|++..+..+.+|+..+.+++..|+-++++-.
T Consensus 13 ~~ar~~A~~il~~A~~~A~~~~~~A~e~~e~~~ 45 (183)
T TIGR02499 13 AAARARAQAILAAARQRAEAILADAEEEAEASR 45 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999884999999999999999999999999999
No 101
>pfam11696 DUF3292 Protein of unknown function (DUF3292). This eukaryotic family of proteins has no known function.
Probab=49.70 E-value=10 Score=17.44 Aligned_cols=11 Identities=18% Similarity=0.314 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999987
Q gi|254780958|r 30 VEAIIRYIKDK 40 (355)
Q Consensus 30 lde~~~~~~~~ 40 (355)
|=.++|+|.++
T Consensus 52 LW~LIRRFnKQ 62 (641)
T pfam11696 52 LWMLIRRFNKQ 62 (641)
T ss_pred HHHHHHHHCCC
T ss_conf 99999985001
No 102
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family; InterPro: IPR005701 The MPA1 proteins function in capsule polysaccharide and exopolysaccharide polymerization and/or export. They possess a characteristic carboxy-terminal ATP-binding domain and one or more regions which can form coiled-coils and are located in the periplasmic domain between the two transmembrane regions of the protein .; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport, 0016021 integral to membrane.
Probab=49.42 E-value=15 Score=16.26 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99899999999872116887764379999999999999974214538899
Q gi|254780958|r 28 FDVEAIIRYIKDKFDLIPFFKSYGSVYIILLLIGSFCAFQSIYIVHPDER 77 (355)
Q Consensus 28 ~dlde~~~~~~~~~~~~~~~~~~~~i~ii~~v~~~~~~~sg~~~V~~ge~ 77 (355)
-|+-++++.++++.. .++++.++..++-+.-+||++.|.+.
T Consensus 12 IDl~~l~~~l~k~~~---------lil~~al~~~~~s~~~tfF~~~P~Yt 52 (235)
T TIGR01006 12 IDLLQLLKKLWKRKL---------LILIVALLFLIISFIYTFFIISPKYT 52 (235)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_conf 889999999998768---------99999999999987765401204773
No 103
>TIGR00263 trpB tryptophan synthase, beta subunit; InterPro: IPR006654 Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan , : L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O It has two functional domains, each found in bacteria and plants on a separate subunit: alpha chain (IPR002028 from INTERPRO) is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and beta chain is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together on a single multifunctional protein . The beta chain of the enzyme, represented here, requires pyridoxal-phosphate as a cofactor. The pyridoxal-phosphate group is attached to a lysine residue. The region around this lysine residue also contains two histidine residues which are part of the pyridoxal-phosphate binding site.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process.
Probab=49.26 E-value=9.7 Score=17.54 Aligned_cols=46 Identities=11% Similarity=0.249 Sum_probs=30.2
Q ss_pred HHCHHHHHHHH------------------HHHHHHHHHCCC-CE-EEEECCCCEEEEECHHHHHHCCCC
Q ss_conf 86999999999------------------999999983799-59-999679984754034797202456
Q gi|254780958|r 298 VNAPTLLRKRI------------------YLETMEGILKKA-KK-VIIDKKQSVMPYLPLNEAFSRIQT 346 (355)
Q Consensus 298 ~~ap~vt~~rl------------------ylet~~~vl~~~-~k-~ii~~~~~~~~yLpl~~~~~~~~~ 346 (355)
+++|-|.|+|| --+||+++.+++ +. |+|-|--|.- |.+++.+-.|+
T Consensus 141 RQ~pNVFRMellGA~V~pV~sGs~TLKDA~N~AlrDWv~~~~dThYvlGSa~GPh---PfP~mVr~FQs 206 (412)
T TIGR00263 141 RQKPNVFRMELLGAKVVPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPH---PFPTMVRDFQS 206 (412)
T ss_pred HCCCCHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCC---CCCHHHHHHHH
T ss_conf 4577523451377868330157870378999999874136375112321114877---67221178877
No 104
>KOG4040 consensus
Probab=48.28 E-value=18 Score=15.71 Aligned_cols=63 Identities=13% Similarity=0.199 Sum_probs=39.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999997787777788999998899899999999872116--887764379999999999999974214
Q gi|254780958|r 6 NNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLI--PFFKSYGSVYIILLLIGSFCAFQSIYI 71 (355)
Q Consensus 6 ~~~p~~~~~~~~~~~~~~~~~p~dlde~~~~~~~~~~~~--~~~~~~~~i~ii~~v~~~~~~~sg~~~ 71 (355)
-++||-.|+.++.+.|-+..-|.|+|-. -.++|.+. |.-.+...++..+++++.+.++.++++
T Consensus 85 ~kDpyy~Wd~p~~rrNwgEpv~~d~d~Y---~~dR~t~~e~p~y~~w~~~~mcl~g~~~~~l~~~y~~ 149 (186)
T KOG4040 85 HKDPYYAWDDPQNRRNWGEPVPIDMDRY---RGDRFTGLEAPDYTTWNSIVMCLRGLVPMALLAWYFT 149 (186)
T ss_pred CCCCCCCCCCHHHHCCCCCCCCHHHHHH---CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4788665677312114689853246664---2554444679885209999999999999999999971
No 105
>TIGR01608 citD citrate lyase acyl carrier protein; InterPro: IPR006495 This group of sequences represent the acyl carrier protein (gamma subunit) of the holoenzyme citrate lyase (4.1.3.6 from EC) composed of alpha (2.8.3.10 from EC), beta (4.1.3.34 from EC), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The set contains an experimentally characterised member from Leuconostoc mesenteroides . The sequences come from a wide range of Gram-positive bacteria. For Gram-negative bacteria, it appears that only sequences from the gamma proteobacteria are included..
Probab=46.71 E-value=19 Score=15.55 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1554678877799998886312346179875343015625789999999988788999
Q gi|254780958|r 187 FRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDED 244 (355)
Q Consensus 187 lt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~e 244 (355)
-|+=+.++.++|.+.+.+.|..| ||+=..|.+.| +-|.+-|+.||-+.-
T Consensus 34 ~S~VkkQFg~~I~~~vkeTL~~l--Gv~~a~v~v~D-------KGAL~~vl~AR~~aA 82 (95)
T TIGR01608 34 SSSVKKQFGDEIEKVVKETLKEL--GVENAVVKVVD-------KGALNCVLKARTKAA 82 (95)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHC--CCCEEEEEEEC-------CCHHHHHHHHHHHHH
T ss_conf 20177775799999999989865--94435688724-------666788999999999
No 106
>PRK06937 type III secretion system protein; Reviewed
Probab=46.52 E-value=19 Score=15.53 Aligned_cols=18 Identities=22% Similarity=0.261 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 988788999999999999
Q gi|254780958|r 236 VQRAEQDEDRFVEESNKY 253 (355)
Q Consensus 236 v~~A~qe~er~i~eAe~~ 253 (355)
+..|++++++...+|+..
T Consensus 36 le~A~~~A~~i~~~A~~~ 53 (204)
T PRK06937 36 VEAARQRAAEIEAEAREV 53 (204)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 107
>TIGR00034 aroFGH phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006219 Members of this group catalyze the first enzymatic reaction of the shikimate pathway. The common (shikimate) pathway links metabolism of carbohydrates to biosynthesis of aromatic amino acids phenylalanine, tyrosine, tryptophan, and derivatives in microorganisms and in plants. In a sequence of seven enzymatic reactions, D-erythrose 4-phosphate (E4P), an intermediate of the pentose phosphate pathway, and phosphoenol pyruvate (PEP), a glycolytic intermediate, are converted to chorismate. The pathway begins with the stereospecific condensation of E4P and PEP to yield 7-phospho 2-dehydro 3-deoxy-D-arabino-heptulosonate (DAHP), catalyzed by 3-deoxy-7-phosphoheptulonate synthase (DAHPS) (EC 2.5.1.54, formerly EC 4.1.2.15). The divalent metal cation requirement of this enzyme can be satisfied by a broad range of metals . A Cys residue in a Cys-X-X-His motif has been identified as part of a metal binding site . In Escherichia coli, the enzyme exists in three isoforms, each specifically inhibited by one of the three aromatic amino acids. DAHP synthetases fall into two classes, class I (represented by this entry) and class II (represented by PIRSF015573 from PIRSF). Class I was believed to be limited to microorganisms and class II to plants. However, a more recent study showed that class II also contains enzymes from a microbial eukaryote and several bacteria . Brick and Woodard proposed that the difference between the two classes lies in their metal ion requirement for activity. Whereas class I requires no metal cation, class II is dependent on a metal cation for activity. However, recently a class I DAHP synthase from Thermotoga maritima has been purified, characterised, and shown to be a metalloenzyme . The three-dimentional structures of DAHP synthases have been determined , , , , . The DAHPS(Phe) monomer is a (beta/alpha)8 barrel with an additional N-terminal beta strand and helices and an extra beta sheet near the C terminus . The active site is located in a cleft at the carboxyl end of the barrel . The allosteric feedback inhibition binding site of DAHPS(Phe) is composed of residues from two adjacent subunits of a tight dimer and is at least 20 angstroms away from the closest active site . The absence of the shikimate pathway in animals makes it an attractive target for nontoxic herbicidal, antimicrobial, and antifungal agents. The nontoxic herbicide glyphosphate competitively inhibits 3-phosphoshikimate 1-carboxyvinyltransferase, the sixth enzymatic reaction of the pathway.; GO: 0003849 3-deoxy-7-phosphoheptulonate synthase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=46.02 E-value=19 Score=15.53 Aligned_cols=14 Identities=21% Similarity=0.335 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 38899999875331
Q gi|254780958|r 73 HPDERAVELRFGKP 86 (355)
Q Consensus 73 ~~ge~gVv~rfGk~ 86 (355)
+.|+.+|+.+=|..
T Consensus 213 k~G~~ai~~T~GN~ 226 (348)
T TIGR00034 213 KDGQMAIVQTSGNP 226 (348)
T ss_pred CCCCEEEEECCCCC
T ss_conf 87736787526798
No 108
>pfam05568 ASFV_J13L African swine fever virus J13L protein. This family consists of several African swine fever virus J13L proteins.
Probab=43.27 E-value=19 Score=15.58 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=11.5
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q ss_conf 3799999999999999742
Q gi|254780958|r 51 GSVYIILLLIGSFCAFQSI 69 (355)
Q Consensus 51 ~~i~ii~~v~~~~~~~sg~ 69 (355)
.++.+++++++++++|||-
T Consensus 37 aivvliiiiivliylfssr 55 (189)
T pfam05568 37 AIVVLIIIIIVLIYLFSSR 55 (189)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999997220
No 109
>pfam06850 PHB_depo_C PHB de-polymerase C-terminus. This family represents the C-terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=43.16 E-value=22 Score=15.20 Aligned_cols=33 Identities=24% Similarity=0.567 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999986999999999999999983799
Q gi|254780958|r 287 ADRFLSIYGQYVNAPTLLRKRIYLETMEGILKKA 320 (355)
Q Consensus 287 a~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~~ 320 (355)
|++....|.||..--+++-+ .||||++.|+.+.
T Consensus 81 a~~~~~FydEY~avmDlpae-fYL~Tv~~VFqe~ 113 (203)
T pfam06850 81 ADKHRDFYDEYLAVMDLTAE-FYLQTVDTVFQEH 113 (203)
T ss_pred HHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHC
T ss_conf 99999999998777069699-9999999999848
No 110
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=38.48 E-value=22 Score=15.14 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=44.3
Q ss_pred EEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHH--------------------------HHCCC
Q ss_conf 0366068418876344342215887853201298999988877767777--------------------------53010
Q gi|254780958|r 129 GLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREV--------------------------VGRRF 182 (355)
Q Consensus 129 ~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~v--------------------------vg~~~ 182 (355)
.|+||+|+|+|-.|+-+ .|-| +.+|+..|.+. +++..|.-.|++ .+.++
T Consensus 200 PLViT~~G~L~alDAKl--~~DD--nALFRH~~l~~-~~D~~~~~~~e~~A~~~gL~Yv~LdGnIGc~vNGAGLAMaTMD 274 (389)
T TIGR01016 200 PLVITKDGNLVALDAKL--TIDD--NALFRHPDLEE-MEDYTQEDQLEVEAKQLGLNYVKLDGNIGCMVNGAGLAMATMD 274 (389)
T ss_pred CEEECCCCCEEEEEEEC--CCCC--CHHCCCCCHHH-HCCCCCCCHHHHHHHHHCCCEEEECCCEEEECCCHHHHHHHHH
T ss_conf 63687898889983322--4465--51006711687-6388877733799986188368854770797043567899999
Q ss_pred CCCCCCC--------CHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf 0000155--------4678877799998886312346179875343
Q gi|254780958|r 183 AVDIFRS--------QRQQIALEVRNLIQKTMDYYKSGILINTISI 220 (355)
Q Consensus 183 ~d~ilt~--------~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i 220 (355)
+=-++.. |=..=+..|++.+.-.|..- -|.++-|+|
T Consensus 275 IiKl~GG~PANFLDvGGGA~~e~v~eA~~~vLsD~--~VKvvfiNI 318 (389)
T TIGR01016 275 IIKLYGGKPANFLDVGGGASEERVKEALKLVLSDK--SVKVVFINI 318 (389)
T ss_pred HHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHCCC--CCEEEEEEE
T ss_conf 99971889530224587889899999989873599--820899970
No 111
>pfam00287 Na_K-ATPase Sodium / potassium ATPase beta chain.
Probab=35.41 E-value=29 Score=14.41 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=15.6
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCEECCCC
Q ss_conf 214538899999875331135558983664575
Q gi|254780958|r 69 IYIVHPDERAVELRFGKPKNDVFLPGLHMMFWP 101 (355)
Q Consensus 69 ~~~V~~ge~gVv~rfGk~~~~v~~pGlh~~~pp 101 (355)
+.|+++.. =++...+..|||-+.|-+
T Consensus 63 l~Tld~~~-------Pk~qd~~~~PGL~~rP~~ 88 (289)
T pfam00287 63 LQTLDDYT-------PKYQDRVASPGLMIRPKV 88 (289)
T ss_pred HHHCCCCC-------CCCCCCCCCCCEEEECCC
T ss_conf 98789989-------842236899971651488
No 112
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=34.36 E-value=30 Score=14.30 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999777899999999723229999
Q gi|254780958|r 264 EASHIRESSIAYKDRIIQEAQGEADRF 290 (355)
Q Consensus 264 eA~~i~~~Aeay~~~~i~~A~gea~rf 290 (355)
+..+++.+|+.++++.+.+|+.++++.
T Consensus 561 ~~~~~~~~~~~ea~~~i~~a~~e~~~~ 587 (780)
T PRK00409 561 REDKLLLEAEEEAQQAIKEAKKEAAEI 587 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 113
>pfam05279 Asp-B-Hydro_N Aspartyl beta-hydroxylase N-terminal region. This family includes the N-terminal regions of the junctin, junctate and aspartyl beta-hydroxylase proteins. Junctate is an integral ER/SR membrane calcium binding protein, which comes from an alternatively spliced form of the same gene that generates aspartyl beta-hydroxylase and junctin. Aspartyl beta-hydroxylase catalyses the post-translational hydroxylation of aspartic acid or asparagine residues contained within epidermal growth factor (EGF) domains of proteins.
Probab=33.68 E-value=30 Score=14.23 Aligned_cols=39 Identities=21% Similarity=0.169 Sum_probs=17.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHH
Q ss_conf 877643799999999999999742-----14538899999875331
Q gi|254780958|r 46 FFKSYGSVYIILLLIGSFCAFQSI-----YIVHPDERAVELRFGKP 86 (355)
Q Consensus 46 ~~~~~~~i~ii~~v~~~~~~~sg~-----~~V~~ge~gVv~rfGk~ 86 (355)
++-|++.++.-+.+++++-.++|+ -.|+-.++ +=.+|-|
T Consensus 5 ~glsg~SFFtWfmViaLLGvWtSVaVVwFdlVDYeeV--lgkLgiY 48 (232)
T pfam05279 5 GGLSGGSFFTWFMVIALLGVWTSVAVVWFDLVDYEEV--LGKLGVY 48 (232)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCHHHH--HHHHCEE
T ss_conf 6777741799999999988776130455440038987--5443100
No 114
>COG4499 Predicted membrane protein [Function unknown]
Probab=30.86 E-value=34 Score=13.93 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 437999999999999997421453889999987533113
Q gi|254780958|r 50 YGSVYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKN 88 (355)
Q Consensus 50 ~~~i~ii~~v~~~~~~~sg~~~V~~ge~gVv~rfGk~~~ 88 (355)
.|+.++++++++++|+.--.|.+.|-+.+++.---.|..
T Consensus 223 ~giGliillvl~li~~~Y~~f~~~p~qeai~~a~~aFL~ 261 (434)
T COG4499 223 FGIGLIILLVLLLIYFTYYYFSNQPKQEAIITANTAFLK 261 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 888699999999999999999717268889988999985
No 115
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF; InterPro: IPR014110 This entry includes TraF; a protein that is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically in the F-type system. TraF has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm . Unlike the related protein TrbB (IPR014109 from INTERPRO), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulphide isomerase by complementation of an Escherichia coli DsbA defect . The protein is believed to be involved in pilin assembly . Even more closely related than TrbB is a clade of genes (IPR014111 from INTERPRO), which do contain the CXXC motif, but it is unclear whether these are involved in type-F conjugation systems per se..
Probab=30.13 E-value=35 Score=13.85 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHH
Q ss_conf 8877767777530-1000001554678877799998886312346179875343015625
Q gi|254780958|r 168 QVSESAMREVVGR-RFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPP 226 (355)
Q Consensus 168 ~~~esalR~vvg~-~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P 226 (355)
..-+.+++++..+ +-+-=. .+|.+-|...+--.++.-.+.| ||+|+.|.+....-|
T Consensus 148 ~~~~~aI~~l~~~G~Gl~FF-YrG~sp~s~~~a~~i~~F~~~y--~~~vi~vS~DG~~~p 204 (270)
T TIGR02739 148 EQKEKAIEQLSQSGYGLFFF-YRGKSPISQKLAPVIQAFAKEY--GISVIPVSVDGTLIP 204 (270)
T ss_pred HHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCCCCC
T ss_conf 99999999997627624788-6599845678999999888541--966756612432054
No 116
>PHA00430 tail fiber protein
Probab=29.91 E-value=35 Score=13.82 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998878899999999999999
Q gi|254780958|r 233 FDEVQRAEQDEDRFVEESNKYSN 255 (355)
Q Consensus 233 ~~~v~~A~qe~er~i~eAe~~a~ 255 (355)
.++..+++.|.+|+.+||+...+
T Consensus 165 ~~~A~~sr~ea~ra~~~A~~~~~ 187 (568)
T PHA00430 165 RNEANRSRNEADRARNQAERFNN 187 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 77877647688888776665443
No 117
>TIGR02042 sir sulfite reductase, ferredoxin dependent; InterPro: IPR011787 Distantly related to the iron-sulphur hemoprotein of sulphite reductase (NADPH) found in Proteobacteria and Eubacteria, sulphite reductase (ferredoxin) is a cyanobacterial and plant monomeric enzyme that also catalyzes the reduction of sulphite to sulphide.; GO: 0020037 heme binding, 0050311 sulfite reductase (ferredoxin) activity, 0051539 4 iron 4 sulfur cluster binding.
Probab=28.82 E-value=35 Score=13.82 Aligned_cols=30 Identities=13% Similarity=0.366 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEE---EEEECCC
Q ss_conf 77799998886312346179875---3430156
Q gi|254780958|r 195 ALEVRNLIQKTMDYYKSGILINT---ISIEDAS 224 (355)
Q Consensus 195 ~~~v~~~lq~~l~~y~~GI~V~~---V~i~~v~ 224 (355)
+-.++..|.+++++|++-|.++- |-|-+|.
T Consensus 384 ~~~lk~aLRE~v~~~~l~~~lTp~Qn~~~~~i~ 416 (583)
T TIGR02042 384 AFQLKKALREIVEKYNLPVRLTPNQNIILYDIK 416 (583)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCEEEEECC
T ss_conf 178899999988763354365488517997257
No 118
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=27.84 E-value=28 Score=14.50 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=14.5
Q ss_pred HHHHH-HHHCCCCEEEEECCCC
Q ss_conf 99999-9837995999967998
Q gi|254780958|r 310 LETME-GILKKAKKVIIDKKQS 330 (355)
Q Consensus 310 let~~-~vl~~~~k~ii~~~~~ 330 (355)
=|... +-|.+..-+++|..+|
T Consensus 632 AD~iRnd~L~~~gi~L~D~p~G 653 (660)
T TIGR00435 632 ADEIRNDELAKKGIVLVDTPQG 653 (660)
T ss_pred HHHHHHHHHHHCCCEEEECCCC
T ss_conf 7788899998589368627887
No 119
>TIGR00970 leuA_yeast 2-isopropylmalate synthase; InterPro: IPR005668 Alpha-isopropylmalate synthase (2.3.3.13 from EC) catalyses the first step in the biosynthesis of leucine, the condensation of acetyl-CoA and alpha- ketoisovalerate to form 2-isopropylmalate synthase. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.; GO: 0003852 2-isopropylmalate synthase activity, 0009098 leucine biosynthetic process.
Probab=27.76 E-value=15 Score=16.29 Aligned_cols=19 Identities=5% Similarity=0.235 Sum_probs=10.3
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q ss_conf 0155467887779999888
Q gi|254780958|r 186 IFRSQRQQIALEVRNLIQK 204 (355)
Q Consensus 186 ilt~~R~~i~~~v~~~lq~ 204 (355)
+|+..|+++=.+.-+.|..
T Consensus 102 ~LtqsRe~LI~RT~eAl~G 120 (615)
T TIGR00970 102 VLTQSREELIKRTVEALSG 120 (615)
T ss_pred EECCCCHHHHHHHHHHHHC
T ss_conf 5217887789999998306
No 120
>pfam05821 NDUF_B8 NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8). This family consists of several eukaryotic NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI) proteins. NADH:ubiquinone oxidoreductase (complex I) is an extremely complicated multiprotein complex located in the inner mitochondrial membrane. Its main function is the transport of electrons from NADH to ubiquinone, which is accompanied by translocation of protons from the mitochondrial matrix to the intermembrane space. Human complex I appears to consist of 41 subunits.
Probab=27.56 E-value=38 Score=13.56 Aligned_cols=38 Identities=16% Similarity=0.083 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf 99999778777778899999889989999999987211688
Q gi|254780958|r 6 NNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPF 46 (355)
Q Consensus 6 ~~~p~~~~~~~~~~~~~~~~~p~dlde~~~~~~~~~~~~~~ 46 (355)
..+||-+|+.+.-+.|=+..-..|+|-..+ ++++..+.
T Consensus 80 ~rDpy~~wD~p~~RRN~gEPih~d~Dmy~~---dR~d~s~~ 117 (179)
T pfam05821 80 ERDPYYPWDHPELRRNWGEPIHADFDMYSR---DRVDTAET 117 (179)
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCHHHHCC---CCCCCCCC
T ss_conf 269888888866624678998501555322---44777888
No 121
>TIGR00844 c_cpa1 sodium/hydrogen antiporter; InterPro: IPR004712 Na^+/H^+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na^+/H^+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na^+ for H^+ in an electroneutral manner, and this activity is carried out by a family of Na^+/H^+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. In mammalian cells, Na^+/H^+ exchange activity is found in both the plasma membrane and inner mitochondrial membrane. To date, six mammalian isoforms have been identified (designated NHE1-NHE6) , . These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport . This group is specific for the fungal members of this family. ; GO: 0015385 sodium:hydrogen antiporter activity, 0006814 sodium ion transport, 0016021 integral to membrane.
Probab=26.50 E-value=35 Score=13.86 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred HHHHHHHHHH-----CCCHHHHHHHHHHHHHCCC
Q ss_conf 9999997421-----4538899999875331135
Q gi|254780958|r 61 GSFCAFQSIY-----IVHPDERAVELRFGKPKND 89 (355)
Q Consensus 61 ~~~~~~sg~~-----~V~~ge~gVv~rfGk~~~~ 89 (355)
+++|-.+||+ +|+-..+||| .+|+|-.+
T Consensus 413 ACiWPITCF~I~TSvIVHGSSVAvI-~LGRyL~T 445 (923)
T TIGR00844 413 ACIWPITCFSIVTSVIVHGSSVAVI-MLGRYLNT 445 (923)
T ss_pred HHHHHHHHHHHHHHHEECCHHHHHH-HHHHHHHH
T ss_conf 4540345553221210222066788-76346667
No 122
>pfam09680 Tiny_TM_bacill Protein of unknown function (Tiny_TM_bacill). This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=26.25 E-value=40 Score=13.41 Aligned_cols=20 Identities=5% Similarity=0.054 Sum_probs=9.0
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 43799999999999999742
Q gi|254780958|r 50 YGSVYIILLLIGSFCAFQSI 69 (355)
Q Consensus 50 ~~~i~ii~~v~~~~~~~sg~ 69 (355)
+..+++++++++++...+.+
T Consensus 5 gFaLiVVLFILLIIVG~s~~ 24 (26)
T pfam09680 5 GFALIVVLFILLIIVGASYF 24 (26)
T ss_pred CEEHHHHHHHHHHHHHHHHH
T ss_conf 12269999999999833540
No 123
>TIGR00769 AAA ADP/ATP carrier protein family; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane.
Probab=24.43 E-value=20 Score=15.38 Aligned_cols=44 Identities=30% Similarity=0.496 Sum_probs=31.3
Q ss_pred HHHCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECHHHHHH
Q ss_conf 9869999999999999999837995999967998475403479720
Q gi|254780958|r 297 YVNAPTLLRKRIYLETMEGILKKAKKVIIDKKQSVMPYLPLNEAFS 342 (355)
Q Consensus 297 Y~~ap~vt~~rlylet~~~vl~~~~k~ii~~~~~~~~yLpl~~~~~ 342 (355)
....|-..- -|.=.||-||+++.|+-+=+.--.|-|.|||+-.+
T Consensus 384 LG~TPL~lA--v~vG~~QN~lSk~~KyslFD~tKeMAyIPLd~~~K 427 (491)
T TIGR00769 384 LGMTPLLLA--VYVGAIQNILSKSTKYSLFDATKEMAYIPLDEEQK 427 (491)
T ss_pred HHCCHHHHH--HHHHHHHEEEECCEEECCCHHHHHCCCCCCCCCCC
T ss_conf 731189999--99844320221241120070235225689882002
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=23.96 E-value=43 Score=13.22 Aligned_cols=33 Identities=27% Similarity=0.444 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 9998878899999999-99999987768899999
Q gi|254780958|r 234 DEVQRAEQDEDRFVEE-SNKYSNRVLGSARGEAS 266 (355)
Q Consensus 234 ~~v~~A~qe~er~i~e-Ae~~a~~i~~~A~geA~ 266 (355)
+.++.+-.|-.|+... .+..+.-++.++-.++.
T Consensus 271 ~~~~~~G~d~~rf~~dLl~~~Rdl~~~~~~~~~~ 304 (775)
T PRK07764 271 DRVIEAGHDPRRFAEDLLERFRDLIVLQAVPDAA 304 (775)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 9999828788999999999999999998610666
No 125
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=23.20 E-value=46 Score=13.03 Aligned_cols=27 Identities=33% Similarity=0.588 Sum_probs=16.9
Q ss_pred CCEEEEEEEEEECCCHHH--HHHHHHHHH
Q ss_conf 461798753430156257--899999999
Q gi|254780958|r 210 KSGILINTISIEDASPPR--EVADAFDEV 236 (355)
Q Consensus 210 ~~GI~V~~V~i~~v~~P~--~v~~A~~~v 236 (355)
..+-+|.++.+++-+|-+ ++..+|.++
T Consensus 112 e~~tqiInItv~~~~p~~Aa~IAN~~~~v 140 (226)
T COG3944 112 ETDTQIINITVNDGSPEEAAEIANSISEV 140 (226)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 88856899873799867999999999999
No 126
>PRK06855 aminotransferase; Validated
Probab=22.83 E-value=47 Score=12.99 Aligned_cols=20 Identities=15% Similarity=0.068 Sum_probs=7.6
Q ss_pred EEEEEEEEEECCCHHHHHHH
Q ss_conf 17987534301562578999
Q gi|254780958|r 212 GILINTISIEDASPPREVAD 231 (355)
Q Consensus 212 GI~V~~V~i~~v~~P~~v~~ 231 (355)
|..+==+.+-...+++.+..
T Consensus 249 GwRiG~~~~~~~~~~~~~~~ 268 (433)
T PRK06855 249 GSRCGWIEVYNAEKDPVFKK 268 (433)
T ss_pred CCCEEEEEEECCCCHHHHHH
T ss_conf 31267886315773699999
No 127
>KOG2457 consensus
Probab=22.79 E-value=47 Score=12.98 Aligned_cols=24 Identities=13% Similarity=-0.017 Sum_probs=14.2
Q ss_pred HHHHHHHHHC----CCHHHHHHHHHHHH
Q ss_conf 9999974214----53889999987533
Q gi|254780958|r 62 SFCAFQSIYI----VHPDERAVELRFGK 85 (355)
Q Consensus 62 ~~~~~sg~~~----V~~ge~gVv~rfGk 85 (355)
-+|+..|||+ ..+|-+-||.-.|.
T Consensus 171 ~lWaGlGyY~R~rrL~ega~~vv~~~~g 198 (555)
T KOG2457 171 ELWAGLGYYRRARRLLEGAKMVVAGTEG 198 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9984101898889999999999975788
No 128
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family; InterPro: IPR010020 This entry identifies a clade of sequences from gamma and beta proteobacteria. These proteins are more than 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from Escherichia coli has been annotated as yccS. The YccS hypothetical equivalog is found in beta and gamma proteobacteria, while the smaller YhfK group is only found in E. coli, Salmonella and Yersinia. .
Probab=22.15 E-value=43 Score=13.26 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHHHHHCCC-CCCCCCCHHH--HHHHHHHH-----------HHHHHHHHCCCHHHHHHHHHH-----HHHC
Q ss_conf 899899999999872116-8877643799--99999999-----------999974214538899999875-----3311
Q gi|254780958|r 27 PFDVEAIIRYIKDKFDLI-PFFKSYGSVY--IILLLIGS-----------FCAFQSIYIVHPDERAVELRF-----GKPK 87 (355)
Q Consensus 27 p~dlde~~~~~~~~~~~~-~~~~~~~~i~--ii~~v~~~-----------~~~~sg~~~V~~ge~gVv~rf-----Gk~~ 87 (355)
|-.|.+++..++..|.-. |-+...+-+. +.+..+++ +++.+++|+-+|++-|=..|+ |-++
T Consensus 370 ~~gL~~~~~~L~~~lt~~S~lfRhA~RlSlvv~l~~A~l~~~~~~~PkgYWILLT~lfVcQpnY~ATr~Rl~~Ri~GTvv 449 (724)
T TIGR01667 370 PRGLKDILARLKSHLTPESPLFRHAVRLSLVVMLGYAILEFTALHLPKGYWILLTTLFVCQPNYGATRLRLVQRIIGTVV 449 (724)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 32357899999861383456787489999999999999986415798505443343553038873466888764577888
Q ss_pred CCCC-CCCCEECCC
Q ss_conf 3555-898366457
Q gi|254780958|r 88 NDVF-LPGLHMMFW 100 (355)
Q Consensus 88 ~~v~-~pGlh~~~p 100 (355)
+-+. |--|||++|
T Consensus 450 Glv~aG~~L~~~~P 463 (724)
T TIGR01667 450 GLVIAGVALLFLIP 463 (724)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99987578864247
No 129
>pfam10484 MRP-S23 Mitochondrial ribosomal protein S23. MRP-S23 is one of the proteins that makes up the 55S ribosome in eukaryotes from nematodes to humans. It does not appear to carry any common motifs, either RNA binding or ribosomal protein motifs. All of the mammalian MRPs are encoded in nuclear genes that are evolving more rapidly than those encoding cytoplasmic ribosomal proteins. The MRPs are imported into mitochondria where they assemble coordinately with mitochondrially transcribed rRNAs into ribosomes that are responsible for translating the 13 mRNAs for essential proteins of the oxidative phosphorylation system. MRP-S23 is significantly up-regulated in uterine cancer cells.
Probab=22.07 E-value=48 Score=12.89 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
Q ss_conf 2999999999998699999999999999998379
Q gi|254780958|r 286 EADRFLSIYGQYVNAPTLLRKRIYLETMEGILKK 319 (355)
Q Consensus 286 ea~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~ 319 (355)
-.++|-.+|.+.++-+++.-++||-||-+..+..
T Consensus 36 ~~QqFvq~Y~eLks~g~ldee~lfeeTak~Llae 69 (74)
T pfam10484 36 QTQQFVQKYQELKSQGALDEEELFEETAKALLEE 69 (74)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 8899999999998703556888999999999875
No 130
>pfam12072 DUF3552 Domain of unknown function (DUF3552). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important.
Probab=21.60 E-value=49 Score=12.83 Aligned_cols=10 Identities=0% Similarity=-0.117 Sum_probs=5.4
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999837
Q gi|254780958|r 309 YLETMEGILK 318 (355)
Q Consensus 309 ylet~~~vl~ 318 (355)
-..+|+++.+
T Consensus 190 i~~AIQR~As 199 (201)
T pfam12072 190 IALAIQRCAA 199 (201)
T ss_pred HHHHHHHHHC
T ss_conf 9999997641
No 131
>TIGR02876 spore_yqfD sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown ..
Probab=21.53 E-value=50 Score=12.82 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH--------CC-CHHHHHHHHHHHHHCCCCCCCCCE-ECCC
Q ss_conf 6437999999999999997421--------45-388999998753311355589836-6457
Q gi|254780958|r 49 SYGSVYIILLLIGSFCAFQSIY--------IV-HPDERAVELRFGKPKNDVFLPGLH-MMFW 100 (355)
Q Consensus 49 ~~~~i~ii~~v~~~~~~~sg~~--------~V-~~ge~gVv~rfGk~~~~v~~pGlh-~~~p 100 (355)
..|+++.+++.+++++++|+|- +. +..+..|...+-++ + + .||.. |.+.
T Consensus 84 r~~~~~G~L~f~~~~~~lS~fiW~IdvrI~g~~~~~~~~i~~~L~~~-G-~-k~Gv~k~~~D 142 (406)
T TIGR02876 84 RPGILIGILLFLAIVYLLSTFIWKIDVRITGVKGETEYEIRKELKEM-G-I-KPGVKKFSID 142 (406)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHC-C-C-CCCCCCCCCC
T ss_conf 50076689999999998617558999997279997789999999855-8-7-5683203688
No 132
>PRK09645 RNA polymerase sigma factor SigL; Provisional
Probab=21.42 E-value=50 Score=12.80 Aligned_cols=26 Identities=12% Similarity=0.142 Sum_probs=10.9
Q ss_pred HHHHHHHCHHHHHHHHH--HHHHHHHHC
Q ss_conf 99999869999999999--999999837
Q gi|254780958|r 293 IYGQYVNAPTLLRKRIY--LETMEGILK 318 (355)
Q Consensus 293 i~~~Y~~ap~vt~~rly--let~~~vl~ 318 (355)
|......++.-.+.|+| ++.+.+.|.
T Consensus 138 IA~~l~is~~tVk~~l~ra~~~Lr~~L~ 165 (171)
T PRK09645 138 IAADLGIPEGTVKSRLHYAVRALRLTLQ 165 (171)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999892999999999999999999999
No 133
>TIGR00814 stp serine transporter; InterPro: IPR004694 The Hydroxy/Aromatic Amino Acid Permease (HAAAP) family includes well characterised aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This group is specific for hydroxy amino acid transporters and includes the serine permease, SdaC and threonine permease, TdcC, of Escherichia coli.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=21.24 E-value=50 Score=12.78 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=10.4
Q ss_pred HHHHHHHH-HHHHHCCCCCCCCCEE
Q ss_conf 88999998-7533113555898366
Q gi|254780958|r 74 PDERAVEL-RFGKPKNDVFLPGLHM 97 (355)
Q Consensus 74 ~ge~gVv~-rfGk~~~~v~~pGlh~ 97 (355)
++--.||. .|||-.+...+ =|+|
T Consensus 67 ~DiT~vV~~hfGK~~G~liT-~LYF 90 (419)
T TIGR00814 67 EDITEVVEEHFGKTWGILIT-LLYF 90 (419)
T ss_pred CCCCHHHHHHCCCHHHHHHH-HHHH
T ss_conf 89732654211113678999-9999
No 134
>pfam06637 PV-1 PV-1 protein (PLVAP). This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown.
Probab=20.58 E-value=52 Score=12.69 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 6437999999999999997421453889
Q gi|254780958|r 49 SYGSVYIILLLIGSFCAFQSIYIVHPDE 76 (355)
Q Consensus 49 ~~~~i~ii~~v~~~~~~~sg~~~V~~ge 76 (355)
...+=++|++.+++|.++...+++.+..
T Consensus 32 vSLIQfLIIlgLVLFmVYGnvH~~tEs~ 59 (442)
T pfam06637 32 VSLIQFLIILGLVLFMIYGNVHASTESN 59 (442)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 9999999999999996407744132778
No 135
>pfam06373 CART Cocaine and amphetamine regulated transcript protein (CART). This family consists of several cocaine and amphetamine regulated transcript type I protein (CART) sequences. Cocaine and amphetamine regulated transcript (CART) peptide has been shown to be an anorectic peptide that inhibits both normal and starvation-induced feeding and completely blocks the feeding response induced by neuropeptide Y and regulated by leptin in the hypothalamus. The C-terminal part containing the three disulfide bridges is the biologically active part of the molecule affecting food intake. The solution structure of the active part of CART has a fold equivalent to other functionally distinct small proteins. CART consists mainly of turns and loops spanned by a compact framework composed by a few small stretches of antiparallel beta-sheet common to cystine knots.
Probab=20.45 E-value=52 Score=12.67 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=20.1
Q ss_pred HHHHHCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99986999999999999999983799
Q gi|254780958|r 295 GQYVNAPTLLRKRIYLETMEGILKKA 320 (355)
Q Consensus 295 ~~Y~~ap~vt~~rlylet~~~vl~~~ 320 (355)
+-|.+.|+.+.++-.+|++++||.+.
T Consensus 33 df~~~~~~~~~ek~Ll~ALqevL~kl 58 (110)
T pfam06373 33 DFYPKQDELSEEKELLEALQEVLEKL 58 (110)
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 60668998413999999999999997
No 136
>PRK07193 fliF flagellar MS-ring protein; Reviewed
Probab=20.29 E-value=53 Score=12.65 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHCCCCC
Q ss_conf 89999999987211688
Q gi|254780958|r 30 VEAIIRYIKDKFDLIPF 46 (355)
Q Consensus 30 lde~~~~~~~~~~~~~~ 46 (355)
.+.++.++++..+.+..
T Consensus 6 ~~~~~~~l~~~w~~~~~ 22 (550)
T PRK07193 6 MDAMLSKLKQKWSPFRL 22 (550)
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999985042
No 137
>KOG3927 consensus
Probab=20.10 E-value=53 Score=12.62 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=10.1
Q ss_pred CCCCCCCCEECCCCC
Q ss_conf 355589836645753
Q gi|254780958|r 88 NDVFLPGLHMMFWPI 102 (355)
Q Consensus 88 ~~v~~pGlh~~~ppi 102 (355)
++...|||-|.|.+-
T Consensus 82 ~~~~~PGl~~~P~~~ 96 (300)
T KOG3927 82 DSGANPGLSFRPNPP 96 (300)
T ss_pred CCCCCCCEEECCCCC
T ss_conf 468899634457887
No 138
>PRK11118 hypothetical protein; Provisional
Probab=20.07 E-value=39 Score=13.53 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=9.1
Q ss_pred CCCCCCEECCCCC
Q ss_conf 5589836645753
Q gi|254780958|r 90 VFLPGLHMMFWPI 102 (355)
Q Consensus 90 v~~pGlh~~~ppi 102 (355)
...|||.||+|-.
T Consensus 31 ~~epGliwKIWte 43 (100)
T PRK11118 31 NEEPGFIWKIWTE 43 (100)
T ss_pred HCCCCCEEEEEEC
T ss_conf 4288836778420
Done!