HHsearch alignment for GI: 254780958 and conserved domain: pfam12127
>pfam12127 YdfA_immunity SigmaW regulon antibacterial. This protein is found in bacteria. Proteins in this family are about 330 amino acids in length. The operon from which this protein is derived confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=94.03 E-value=0.48 Score=26.21 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=50.6
Q ss_pred HHHCC-CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75301-00000155467887779999888631234617987534301562578999999998878899999999999999
Q gi|254780958|r 177 VVGRR-FAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSN 255 (355)
Q Consensus 177 vvg~~-~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~ 255 (355)
T Consensus 181 ~IGSa~~hk~VL-EnPd~ISk~VL---~kgLDa-gTAFeIlSIDIADvdVG~NIGA~L---q~dQAeADk~vAqAkAE~R 252 (321)
T pfam12127 181 TIGSADTHKEVL-ENPDSISKTVL---EKGLDA-GTAFEILSIDIADIDVGENIGARL---QTDQAEADKRIAQAKAEER 252 (321)
T ss_pred EECCCCHHHHHH-CCHHHHHHHHH---HCCCCC-CCEEEEEEEEEECCCHHHHHCHHH---HHHHHHHHHHHHHHHHHHH
T ss_conf 132623287997-29878799998---536786-851699987542341222225455---1778878789998778889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 877688999999997778999999997232299
Q gi|254780958|r 256 RVLGSARGEASHIRESSIAYKDRIIQEAQGEAD 288 (355)
Q Consensus 256 ~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~ 288 (355)
T Consensus 253 RA--~AvA~EQEm~A~vqemrA-kvVeAEaeVP 282 (321)
T pfam12127 253 RA--MAVAREQEMKAKVQEMRA-KVVEAEAEVP 282 (321)
T ss_pred HH--HHHHHHHHHHHHHHHHHH-HHHHHHHHCH
T ss_conf 99--999998999999999776-7312320152