HHsearch alignment for GI: 254780958 and conserved domain: pfam12221
>pfam12221 HflK_N Bacterial membrane protein N terminal. This domain is found in bacteria. This domain is typically between 65 to 81 amino acids in length. This domain is found associated with pfam01145. This domain is the N terminal of the bacterial membrane protein HflK. HflK complexes with HflC to form a membrane protease which is modulated by the GTPase HflX. The N terminal domain of HflK is the membrane spanning region which anchors the protein in the bacterial membrane.
Probab=98.53 E-value=1.2e-07 Score=70.15 Aligned_cols=45 Identities=22% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf 998889999977877777889999988998999999998721168877
Q gi|254780958|r 1 MSYDKNNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFK 48 (355)
Q Consensus 1 M~wn~~~~p~~~~~~~~~~~~~~~~~p~dlde~~~~~~~~~~~~~~~~ 48 (355)
T Consensus 1 MawNepg~~--~~dPWg~~-~g~~~gPPDLDe~~r~~~~kl~~lfgg~ 45 (46)
T pfam12221 1 MAWNEPGNN--DKDPWGNG-GGKNQGPPDLDEIFRKLQDKLGGLFGGK 45 (46)
T ss_pred CCCCCCCCC--CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 987788898--88987788-8888899789999999999998660589