HHsearch alignment for GI: 254780958 and conserved domain: pfam12221

>pfam12221 HflK_N Bacterial membrane protein N terminal. This domain is found in bacteria. This domain is typically between 65 to 81 amino acids in length. This domain is found associated with pfam01145. This domain is the N terminal of the bacterial membrane protein HflK. HflK complexes with HflC to form a membrane protease which is modulated by the GTPase HflX. The N terminal domain of HflK is the membrane spanning region which anchors the protein in the bacterial membrane.
Probab=98.53  E-value=1.2e-07  Score=70.15  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
Q ss_conf             998889999977877777889999988998999999998721168877
Q gi|254780958|r    1 MSYDKNNSDWRPTRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFK   48 (355)
Q Consensus         1 M~wn~~~~p~~~~~~~~~~~~~~~~~p~dlde~~~~~~~~~~~~~~~~   48 (355)
T Consensus         1 MawNepg~~--~~dPWg~~-~g~~~gPPDLDe~~r~~~~kl~~lfgg~   45 (46)
T pfam12221         1 MAWNEPGNN--DKDPWGNG-GGKNQGPPDLDEIFRKLQDKLGGLFGGK   45 (46)
T ss_pred             CCCCCCCCC--CCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             987788898--88987788-8888899789999999999998660589