Query gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 355 No_of_seqs 241 out of 2352 Neff 7.0 Searched_HMMs 33803 Date Wed Jun 1 21:44:47 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780958.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1win_A Flotillin 2; BAND 7 do 99.7 2.6E-19 7.8E-24 147.3 2.1 132 100-243 2-142 (143) 2 >2rpb_A Hypothetical membrane 99.7 8.1E-18 2.4E-22 137.4 7.1 112 105-228 2-113 (113) 3 >3bk6_A PH stomatin; archaea, 99.7 5.3E-17 1.6E-21 132.0 10.3 114 100-225 1-114 (114) 4 >2kk7_A V-type ATP synthase su 92.1 0.48 1.4E-05 25.8 6.1 39 251-289 9-47 (52) 5 >2zuo_A MVP, major vault prote 89.4 0.51 1.5E-05 25.6 4.1 91 133-225 12-126 (128) 6 >2k88_A Vacuolar proton pump s 80.8 3.5 0.0001 20.0 5.7 32 258-289 11-42 (60) 7 >1l2p_A ATP synthase B chain; 76.7 4.7 0.00014 19.2 8.3 27 237-263 5-31 (61) 8 >2k6i_A Uncharacterized protei 50.3 3.4 0.0001 20.1 -0.3 37 230-266 15-51 (56) 9 >1dl2_A Class I alpha-1,2-mann 29.4 31 0.00091 13.8 2.8 46 290-335 8-54 (54) 10 >2hiq_A Hypothetical protein Y 29.4 16 0.00048 15.6 0.5 12 90-101 38-49 (95) 11 >2acm_B Mucin-1; auto-catalyti 28.4 32 0.00095 13.7 3.1 36 191-228 17-52 (55) 12 >3ixz_B Potassium-transporting 27.5 33 0.00098 13.6 2.8 17 85-101 72-88 (290) 13 >1o5h_A Formiminotetrahydrofol 27.2 34 0.00099 13.5 6.6 19 166-184 10-28 (182) 14 >2asy_A Protein YDHR precursor 25.9 21 0.00061 14.9 0.5 13 90-102 53-65 (123) 15 >1yqe_A Hypothetical UPF0204 p 21.5 32 0.00096 13.6 0.8 49 168-219 40-88 (97) 16 >2eyq_A TRCF, transcription-re 21.1 44 0.0013 12.8 1.5 18 139-156 111-129 (206) No 1 >>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} (A:) Probab=99.75 E-value=2.6e-19 Score=147.32 Aligned_cols=132 Identities=14% Similarity=0.123 Sum_probs=118.5 Q ss_pred CCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHH---------HCCHHHHHHHHH Q ss_conf 75323687220489998267221147665036606841887634434221588785320---------129899998887 Q gi|254780958|r 100 WPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFN---------LENPGETLKQVS 170 (355) Q Consensus 100 ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~---------v~~~~~~l~~~~ 170 (355) +||+++.+++++.+.++++...+ +|+|+..+.+++++.|||.||..+++. +.+++..|+..+ T Consensus 2 ~P~~~v~~~~~r~~~~~~~~~~v---------~T~D~~~i~v~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 72 (143) T 1win_A 2 SSGSSGQRISLEIMTLQPRCEDV---------ETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTL 72 (143) T ss_dssp CCCCCCCSCCCSCEEECCCEEEE---------ECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHH T ss_pred CCCCCCEEEEEEEEEECCCCCEE---------ECCCCCEEEEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 98874158651678744887167---------878998899999999998480899988776432465889999999999 Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH Q ss_conf 7767777530100000155467887779999888631234617987534301562578999999998878899 Q gi|254780958|r 171 ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDE 243 (355) Q Consensus 171 esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~ 243 (355) ++++|+++|+++++++++ +|++++.++++.|++.++.| ||+|.+|.|++++||+++.+|+++++.|++++ T Consensus 73 ~~~lr~~~~~~~~~~~~~-~r~~i~~~v~~~l~~~l~~~--Gi~i~~v~i~~i~~p~e~~~ai~~~~~Ae~~a 142 (143) T 1win_A 73 EGHLRSILGTLTVEQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS 142 (143) T ss_dssp HHHHHHHHHHSCHHHHHH-THHHHHHHHHHHHHHHHTTT--TEEEEEEECCCEECTTCHHHHHCCCCCCCCCC T ss_pred HHHHHHHHCCCCHHHHHH-CHHHHHHHHHHHHHHHHHHH--CEEEEEEEEEECCCCHHHHHHHHHHHHHHHHC T ss_conf 999999862166677760-89999999999999999650--05888999996388499999999999864434 No 2 >>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} (A:) Probab=99.72 E-value=8.1e-18 Score=137.40 Aligned_cols=112 Identities=20% Similarity=0.375 Sum_probs=103.8 Q ss_pred EEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 68722048999826722114766503660684188763443422158878532012989999888777677775301000 Q gi|254780958|r 105 VEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAV 184 (355) Q Consensus 105 v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d 184 (355) |.+++++.+.+++....+ +|+|++.+.++++++|||.||..|+|++.+++..|+..+++++|+++|+++++ T Consensus 2 v~~vd~r~~~~~~~~~~v---------~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~alr~~~~~~~~~ 72 (113) T 2rpb_A 2 SDHVDLREHVIDVPPQEV---------ICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELD 72 (113) T ss_dssp CSCCCCCCEEEECCCEEE---------ECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTT T ss_pred CCCEEEEEEEECCCCCEE---------ECCCCCEEEEEEEEEEEECCHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCHH T ss_conf 961752688225898576---------83899999998999999887688721279999999999999999998655399 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHH Q ss_conf 00155467887779999888631234617987534301562578 Q gi|254780958|r 185 DIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE 228 (355) Q Consensus 185 ~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~ 228 (355) ++++ +|++++.++++.+++.++.| ||+|++|+|++++||++ T Consensus 73 el~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~I~~i~~p~e 113 (113) T 2rpb_A 73 ETLS-GRDIINARLREELDKITDRW--GVKITRVEIQRIDPPKD 113 (113) T ss_dssp HHHH-CHHHHHHHHHHHHHHHHGGG--TEECCCEEECCCBCCCC T ss_pred HHHH-HHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEEEECCCC T ss_conf 9982-59999999999898776026--98999999985219589 No 3 >>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} (A:1-114) Probab=99.72 E-value=5.3e-17 Score=131.97 Aligned_cols=114 Identities=19% Similarity=0.354 Sum_probs=105.5 Q ss_pred CCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHH Q ss_conf 75323687220489998267221147665036606841887634434221588785320129899998887776777753 Q gi|254780958|r 100 WPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVG 179 (355) Q Consensus 100 ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg 179 (355) .+|+++.+++++.+..++...++ +|+|++.|+++++++|||.||.+|++++.+++..|...+++++|+++| T Consensus 1 f~i~~v~~i~~r~~~~~~~~~~v---------~T~D~~~v~v~~~v~~ri~d~~~~~~~~~~~~~~l~~~~~~~lr~~~~ 71 (114) T 3bk6_A 1 MIFEKAVIVDLRTQVLDVPVQET---------ITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIG 71 (114) T ss_dssp CCEEECCCCCSSCEEEEEEEEEE---------ECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHH T ss_pred CEEEEEEEEEEEEEEEECCCCEE---------ECCCCCEEEEEEEEEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHH T ss_conf 95786289972578760798646---------738998899989999999563546650277888999999999888776 Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCH Q ss_conf 0100000155467887779999888631234617987534301562 Q gi|254780958|r 180 RRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASP 225 (355) Q Consensus 180 ~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~ 225 (355) +++++++++ +|++++.++++.+++.++.| ||+|.+|+|+++++ T Consensus 72 ~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~L 114 (114) T 3bk6_A 72 QAHLDELLS-ERDKLNMQLQRIIDEATDPW--GIKVTAVEIKDVEL 114 (114) T ss_dssp TSCHHHHHH-CHHHHHHHHHHHHHHHTGGG--TEEEEEEEEEEEEE T ss_pred HHHHHHHHC-CHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCC T ss_conf 301898860-07888788999998878734--85899987325699 No 4 >>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} (A:) Probab=92.15 E-value=0.48 Score=25.77 Aligned_cols=39 Identities=31% Similarity=0.506 Sum_probs=24.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 999998776889999999977789999999972322999 Q gi|254780958|r 251 NKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 (355) Q Consensus 251 e~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r 289 (355) +....+|+-.|..+|.+|+.+|+.++..++.+|.-||+. T Consensus 9 dKI~sKIleDA~~~A~kI~sEAekEk~~il~KAkeEAEk 47 (52) T 2kk7_A 9 DKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999888689999989998899999998999998 No 5 >>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A (A:520-647) Probab=89.37 E-value=0.51 Score=25.60 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=59.9 Q ss_pred ECCCEEEEEEEEEEEE--EC---CHHH--HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH----- Q ss_conf 0684188763443422--15---8878--5320129899998887776777753010000015546788777999----- Q gi|254780958|r 133 TGDQNIVGLHFSVLYV--VT---DPRL--YLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRN----- 200 (355) Q Consensus 133 T~D~n~V~v~~~V~yr--I~---Dp~~--~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~----- 200 (355) |.|...+.+.++..|+ ++ |+.. -+|++.|.-.-+-...-|.+|..|++.++|+.....-.-|...|.. T Consensus 12 T~DhArL~l~LsYnW~F~v~d~~d~~~~~k~FsVpDFvGdaCk~iaSRIR~aVA~~~Fd~FHknSa~iIR~aVFG~d~~~ 91 (128) T 2zuo_A 12 TADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSE 91 (128) T ss_dssp CTTCCEEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC--- T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 77889988778777666665001255678875001678999887898899998665399998879999999988776655 Q ss_pred H----------HH--HHHCCCCCEEEEEEEEEECCCH Q ss_conf 9----------88--8631234617987534301562 Q gi|254780958|r 201 L----------IQ--KTMDYYKSGILINTISIEDASP 225 (355) Q Consensus 201 ~----------lq--~~l~~y~~GI~V~~V~i~~v~~ 225 (355) . .. -..+. -|+.|.+|.++.+.| T Consensus 92 ~~~~~~~~~~~~r~~~~F~~--N~lvIt~VDvqsvEp 126 (128) T 2zuo_A 92 DTGPDGTLLPKARDQAVFPQ--NGLVVSSVDVQSVEP 126 (128) T ss_dssp ----------CCCSCEECTT--TCEEEEEEEEEEEEE T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH T ss_conf 56766667777766679999--887999999887689 No 6 >>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} (A:) Probab=80.79 E-value=3.5 Score=20.02 Aligned_cols=32 Identities=25% Similarity=0.351 Sum_probs=20.3 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 76889999999977789999999972322999 Q gi|254780958|r 258 LGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 (355) Q Consensus 258 ~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r 289 (355) +..|+.+|..|+.+|.-++.+.+-.|+.||.. T Consensus 11 LL~AEk~A~~iV~eARk~k~~RLKqAKeEA~~ 42 (60) T 2k88_A 11 LLQAEKEAHEIVSKARKYRQDKLKQAKTDAAK 42 (60) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99989999999999999999889899999999 No 7 >>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} (A:) Probab=76.66 E-value=4.7 Score=19.21 Aligned_cols=27 Identities=22% Similarity=0.496 Sum_probs=13.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 887889999999999999987768899 Q gi|254780958|r 237 QRAEQDEDRFVEESNKYSNRVLGSARG 263 (355) Q Consensus 237 ~~A~qe~er~i~eAe~~a~~i~~~A~g 263 (355) ..|+.+....+.+|+..++.|+.+|+. T Consensus 5 ~eAk~eAa~Ii~~A~kra~qIveeak~ 31 (61) T 1l2p_A 5 KKAKAEAQVIIEQANKRRSQILDEAKA 31 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999999889999999999 No 8 >>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii} (A:) Probab=50.28 E-value=3.4 Score=20.13 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=15.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999887889999999999999987768899999 Q gi|254780958|r 230 ADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEAS 266 (355) Q Consensus 230 ~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~ 266 (355) .+|+.+|--|++..-+.|.||...+.+|.++|--||. T Consensus 15 meaikevklaeeqavkeieeaknraeqikaeaieeak 51 (56) T 2k6i_A 15 MEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAK 51 (56) T ss_dssp TTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999998888999999999988189998899999998 No 9 >>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} (A:238-274,A:479-495) Probab=29.40 E-value=31 Score=13.77 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=28.9 Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCEEEEE Q ss_conf 999999998699999999999999998379-9599996799847540 Q gi|254780958|r 290 FLSIYGQYVNAPTLLRKRIYLETMEGILKK-AKKVIIDKKQSVMPYL 335 (355) Q Consensus 290 f~~i~~~Y~~ap~vt~~rlylet~~~vl~~-~~k~ii~~~~~~~~yL 335 (355) |+=++.+|...-+---.+||.++|..|... .+|++.+.....+|.| T Consensus 8 YEYLlK~~illGd~~y~~My~~A~~aI~kh~~~~~~~~~~~~~~~~~ 54 (54) T 1dl2_A 8 YEYLLKQYLLTHETLYYDLYRKSMEGMKKHDLTKVVFNTEAHPFPVL 54 (54) T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCTTSEEECTTSCEEECC T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC T ss_conf 77888888727867888999999999998776675788888867668 No 10 >>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:1-95) Probab=29.37 E-value=16 Score=15.62 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=9.2 Q ss_pred CCCCCCEECCCC Q ss_conf 558983664575 Q gi|254780958|r 90 VFLPGLHMMFWP 101 (355) Q Consensus 90 v~~pGlh~~~pp 101 (355) ..+||++||+|- T Consensus 38 ~~EpG~iWKIWT 49 (95) T 2hiq_A 38 NQEPGFLWKVWT 49 (95) T ss_dssp TTSTTEEEEEEE T ss_pred CCCCCCEEEEEE T ss_conf 059981588987 No 11 >>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens} (B:) Probab=28.38 E-value=32 Score=13.65 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=25.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHH Q ss_conf 67887779999888631234617987534301562578 Q gi|254780958|r 191 RQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE 228 (355) Q Consensus 191 R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~ 228 (355) -..+..+..+.-.+.++.| -+.|.+|.++++.+|.. T Consensus 17 ~~~VktQf~q~k~eAa~rY--NLtIS~VsV~dv~fPsS 52 (55) T 2acm_B 17 VHDVETQFNQYKTEAASRY--NLTISDVSVSDVPFPFS 52 (55) T ss_dssp HHHHHHHHHHHHHHHHHHH--CCCEEEEEEECC----- T ss_pred HHHHHHHHHHHHHHHHHCC--CEEEEEEEEEECCCCCC T ss_conf 8899999988655232101--33765668764138864 No 12 >>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} (B:) Probab=27.51 E-value=33 Score=13.55 Aligned_cols=17 Identities=12% Similarity=0.089 Sum_probs=10.5 Q ss_pred HHCCCCCCCCCEECCCC Q ss_conf 31135558983664575 Q gi|254780958|r 85 KPKNDVFLPGLHMMFWP 101 (355) Q Consensus 85 k~~~~v~~pGlh~~~pp 101 (355) ++......|||-|.|.+ T Consensus 72 ~~~~~~s~PGL~~rP~~ 88 (290) T 3ixz_B 72 DYQDQLKSPGVTLRPDV 88 (290) T ss_pred CCCCCCCCCCCEECCCC T ss_conf 75346789852321457 No 13 >>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative; 2.80A {Thermotoga maritima} (A:33-214) Probab=27.20 E-value=34 Score=13.52 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=9.2 Q ss_pred HHHHHHHHHHHHHHCCCCC Q ss_conf 9888777677775301000 Q gi|254780958|r 166 LKQVSESAMREVVGRRFAV 184 (355) Q Consensus 166 l~~~~esalR~vvg~~~~d 184 (355) +.-..-++|-+-|+++|+. T Consensus 10 l~galg~aL~~MV~~LT~g 28 (182) T 1o5h_A 10 VVGAXACALAEXVANFTRK 28 (182) T ss_dssp HHHHHHHHHHHHHHHTTTT T ss_pred HHHHHHHHHHHHHHHHHCC T ss_conf 9999999999999998778 No 14 >>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} (A:) Probab=25.89 E-value=21 Score=14.91 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=9.0 Q ss_pred CCCCCCEECCCCC Q ss_conf 5589836645753 Q gi|254780958|r 90 VFLPGLHMMFWPI 102 (355) Q Consensus 90 v~~pGlh~~~ppi 102 (355) ..+||+.||+|-. T Consensus 53 n~EpGliWKIWTE 65 (123) T 2asy_A 53 NQEPGFLWKVWTE 65 (123) T ss_dssp TCCCCBSCCCCBC T ss_pred HCCCCCEEEEEEE T ss_conf 4299806899875 No 15 >>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} (A:186-282) Probab=21.55 E-value=32 Score=13.62 Aligned_cols=49 Identities=10% Similarity=0.162 Sum_probs=33.3 Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE Q ss_conf 8877767777530100000155467887779999888631234617987534 Q gi|254780958|r 168 QVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTIS 219 (355) Q Consensus 168 ~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~ 219 (355) ...+..+++.+.+...+-++-+ +-.+....+..+.+.++.. |++|.... T Consensus 40 ~l~~~~i~~a~e~s~~~~a~iD-~Ks~k~~~r~~i~~~l~~~--gl~v~k~~ 88 (97) T 1yqe_A 40 HLTAEFLVKAVKLSEAEYIIID-EKSVNSAVKKIVNEAAEVA--GVEVLKSK 88 (97) T ss_dssp GCCHHHHHHHHHHHTCSEEEEC-TTTCCHHHHHHHHHHHHHH--TCEEEEHH T ss_pred CCCHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHC--CCEEEEHH T ss_conf 0799999999871788689997-6779878999999999976--97587436 No 16 >>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:1-118,A:269-356) Probab=21.06 E-value=44 Score=12.75 Aligned_cols=18 Identities=11% Similarity=-0.088 Sum_probs=8.4 Q ss_pred EEEEEEEEEEECC-HHHHH Q ss_conf 8763443422158-87853 Q gi|254780958|r 139 VGLHFSVLYVVTD-PRLYL 156 (355) Q Consensus 139 V~v~~~V~yrI~D-p~~~~ 156 (355) +.++..+||.=.+ ..+|+ T Consensus 111 ts~~allq~~~~~tlfDYL 129 (206) T 2eyq_A 111 VPVNTLMQSEPLPPLFSYF 129 (206) T ss_dssp EEHHHHTBSSCCCBGGGGS T ss_pred EEHHHHHCCCCCCCHHHHC T ss_conf 7579972578877588747 Done!