Query         gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 355
No_of_seqs    241 out of 2352
Neff          7.0 
Searched_HMMs 33803
Date          Wed Jun  1 21:44:47 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780958.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1win_A Flotillin 2; BAND 7 do  99.7 2.6E-19 7.8E-24  147.3   2.1  132  100-243     2-142 (143)
  2 >2rpb_A Hypothetical membrane   99.7 8.1E-18 2.4E-22  137.4   7.1  112  105-228     2-113 (113)
  3 >3bk6_A PH stomatin; archaea,   99.7 5.3E-17 1.6E-21  132.0  10.3  114  100-225     1-114 (114)
  4 >2kk7_A V-type ATP synthase su  92.1    0.48 1.4E-05   25.8   6.1   39  251-289     9-47  (52)
  5 >2zuo_A MVP, major vault prote  89.4    0.51 1.5E-05   25.6   4.1   91  133-225    12-126 (128)
  6 >2k88_A Vacuolar proton pump s  80.8     3.5  0.0001   20.0   5.7   32  258-289    11-42  (60)
  7 >1l2p_A ATP synthase B chain;   76.7     4.7 0.00014   19.2   8.3   27  237-263     5-31  (61)
  8 >2k6i_A Uncharacterized protei  50.3     3.4  0.0001   20.1  -0.3   37  230-266    15-51  (56)
  9 >1dl2_A Class I alpha-1,2-mann  29.4      31 0.00091   13.8   2.8   46  290-335     8-54  (54)
 10 >2hiq_A Hypothetical protein Y  29.4      16 0.00048   15.6   0.5   12   90-101    38-49  (95)
 11 >2acm_B Mucin-1; auto-catalyti  28.4      32 0.00095   13.7   3.1   36  191-228    17-52  (55)
 12 >3ixz_B Potassium-transporting  27.5      33 0.00098   13.6   2.8   17   85-101    72-88  (290)
 13 >1o5h_A Formiminotetrahydrofol  27.2      34 0.00099   13.5   6.6   19  166-184    10-28  (182)
 14 >2asy_A Protein YDHR precursor  25.9      21 0.00061   14.9   0.5   13   90-102    53-65  (123)
 15 >1yqe_A Hypothetical UPF0204 p  21.5      32 0.00096   13.6   0.8   49  168-219    40-88  (97)
 16 >2eyq_A TRCF, transcription-re  21.1      44  0.0013   12.8   1.5   18  139-156   111-129 (206)

No 1  
>>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} (A:)
Probab=99.75  E-value=2.6e-19  Score=147.32  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=118.5

Q ss_pred             CCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHH---------HCCHHHHHHHHH
Q ss_conf             75323687220489998267221147665036606841887634434221588785320---------129899998887
Q gi|254780958|r  100 WPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFN---------LENPGETLKQVS  170 (355)
Q Consensus       100 ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~---------v~~~~~~l~~~~  170 (355)
                      +||+++.+++++.+.++++...+         +|+|+..+.+++++.|||.||..+++.         +.+++..|+..+
T Consensus         2 ~P~~~v~~~~~r~~~~~~~~~~v---------~T~D~~~i~v~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   72 (143)
T 1win_A            2 SSGSSGQRISLEIMTLQPRCEDV---------ETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTL   72 (143)
T ss_dssp             CCCCCCCSCCCSCEEECCCEEEE---------ECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEEEEEECCCCCEE---------ECCCCCEEEEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf             98874158651678744887167---------878998899999999998480899988776432465889999999999


Q ss_pred             HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             7767777530100000155467887779999888631234617987534301562578999999998878899
Q gi|254780958|r  171 ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDE  243 (355)
Q Consensus       171 esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~  243 (355)
                      ++++|+++|+++++++++ +|++++.++++.|++.++.|  ||+|.+|.|++++||+++.+|+++++.|++++
T Consensus        73 ~~~lr~~~~~~~~~~~~~-~r~~i~~~v~~~l~~~l~~~--Gi~i~~v~i~~i~~p~e~~~ai~~~~~Ae~~a  142 (143)
T 1win_A           73 EGHLRSILGTLTVEQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGKTQTSGPSS  142 (143)
T ss_dssp             HHHHHHHHHHSCHHHHHH-THHHHHHHHHHHHHHHHTTT--TEEEEEEECCCEECTTCHHHHHCCCCCCCCCC
T ss_pred             HHHHHHHHCCCCHHHHHH-CHHHHHHHHHHHHHHHHHHH--CEEEEEEEEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             999999862166677760-89999999999999999650--05888999996388499999999999864434


No 2  
>>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} (A:)
Probab=99.72  E-value=8.1e-18  Score=137.40  Aligned_cols=112  Identities=20%  Similarity=0.375  Sum_probs=103.8

Q ss_pred             EEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             68722048999826722114766503660684188763443422158878532012989999888777677775301000
Q gi|254780958|r  105 VEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAV  184 (355)
Q Consensus       105 v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~~~~d  184 (355)
                      |.+++++.+.+++....+         +|+|++.+.++++++|||.||..|+|++.+++..|+..+++++|+++|+++++
T Consensus         2 v~~vd~r~~~~~~~~~~v---------~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~~~~~l~~~~~~alr~~~~~~~~~   72 (113)
T 2rpb_A            2 SDHVDLREHVIDVPPQEV---------ICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELD   72 (113)
T ss_dssp             CSCCCCCCEEEECCCEEE---------ECTTSCEEEECEEEEEEESCTTTCTTTTTHHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred             CCCEEEEEEEECCCCCEE---------ECCCCCEEEEEEEEEEEECCHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf             961752688225898576---------83899999998999999887688721279999999999999999998655399


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHH
Q ss_conf             00155467887779999888631234617987534301562578
Q gi|254780958|r  185 DIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE  228 (355)
Q Consensus       185 ~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~  228 (355)
                      ++++ +|++++.++++.+++.++.|  ||+|++|+|++++||++
T Consensus        73 el~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~I~~i~~p~e  113 (113)
T 2rpb_A           73 ETLS-GRDIINARLREELDKITDRW--GVKITRVEIQRIDPPKD  113 (113)
T ss_dssp             HHHH-CHHHHHHHHHHHHHHHHGGG--TEECCCEEECCCBCCCC
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHCC--CEEEEEEEEEEEECCCC
T ss_conf             9982-59999999999898776026--98999999985219589


No 3  
>>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} (A:1-114)
Probab=99.72  E-value=5.3e-17  Score=131.97  Aligned_cols=114  Identities=19%  Similarity=0.354  Sum_probs=105.5

Q ss_pred             CCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf             75323687220489998267221147665036606841887634434221588785320129899998887776777753
Q gi|254780958|r  100 WPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVG  179 (355)
Q Consensus       100 ppi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg  179 (355)
                      .+|+++.+++++.+..++...++         +|+|++.|+++++++|||.||.+|++++.+++..|...+++++|+++|
T Consensus         1 f~i~~v~~i~~r~~~~~~~~~~v---------~T~D~~~v~v~~~v~~ri~d~~~~~~~~~~~~~~l~~~~~~~lr~~~~   71 (114)
T 3bk6_A            1 MIFEKAVIVDLRTQVLDVPVQET---------ITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIG   71 (114)
T ss_dssp             CCEEECCCCCSSCEEEEEEEEEE---------ECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEEEEEEEECCCCEE---------ECCCCCEEEEEEEEEEEEEECHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             95786289972578760798646---------738998899989999999563546650277888999999999888776


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCH
Q ss_conf             0100000155467887779999888631234617987534301562
Q gi|254780958|r  180 RRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASP  225 (355)
Q Consensus       180 ~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~  225 (355)
                      +++++++++ +|++++.++++.+++.++.|  ||+|.+|+|+++++
T Consensus        72 ~~~~~ei~~-~R~~i~~~i~~~l~~~l~~~--Gi~i~~v~i~~i~L  114 (114)
T 3bk6_A           72 QAHLDELLS-ERDKLNMQLQRIIDEATDPW--GIKVTAVEIKDVEL  114 (114)
T ss_dssp             TSCHHHHHH-CHHHHHHHHHHHHHHHTGGG--TEEEEEEEEEEEEE
T ss_pred             HHHHHHHHC-CHHHHHHHHHHHHHHHHHHC--CCEEEEEEECCCCC
T ss_conf             301898860-07888788999998878734--85899987325699


No 4  
>>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} (A:)
Probab=92.15  E-value=0.48  Score=25.77  Aligned_cols=39  Identities=31%  Similarity=0.506  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999998776889999999977789999999972322999
Q gi|254780958|r  251 NKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADR  289 (355)
Q Consensus       251 e~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r  289 (355)
                      +....+|+-.|..+|.+|+.+|+.++..++.+|.-||+.
T Consensus         9 dKI~sKIleDA~~~A~kI~sEAekEk~~il~KAkeEAEk   47 (52)
T 2kk7_A            9 DKIKSKILDDAKAEANKIISEAEAEKAKILEKAKEEAEK   47 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999888689999989998899999998999998


No 5  
>>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A (A:520-647)
Probab=89.37  E-value=0.51  Score=25.60  Aligned_cols=91  Identities=16%  Similarity=0.265  Sum_probs=59.9

Q ss_pred             ECCCEEEEEEEEEEEE--EC---CHHH--HHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH-----
Q ss_conf             0684188763443422--15---8878--5320129899998887776777753010000015546788777999-----
Q gi|254780958|r  133 TGDQNIVGLHFSVLYV--VT---DPRL--YLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRN-----  200 (355)
Q Consensus       133 T~D~n~V~v~~~V~yr--I~---Dp~~--~~~~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~-----  200 (355)
                      |.|...+.+.++..|+  ++   |+..  -+|++.|.-.-+-...-|.+|..|++.++|+.....-.-|...|..     
T Consensus        12 T~DhArL~l~LsYnW~F~v~d~~d~~~~~k~FsVpDFvGdaCk~iaSRIR~aVA~~~Fd~FHknSa~iIR~aVFG~d~~~   91 (128)
T 2zuo_A           12 TADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIRMAVFGFEMSE   91 (128)
T ss_dssp             CTTCCEEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             77889988778777666665001255678875001678999887898899998665399998879999999988776655


Q ss_pred             H----------HH--HHHCCCCCEEEEEEEEEECCCH
Q ss_conf             9----------88--8631234617987534301562
Q gi|254780958|r  201 L----------IQ--KTMDYYKSGILINTISIEDASP  225 (355)
Q Consensus       201 ~----------lq--~~l~~y~~GI~V~~V~i~~v~~  225 (355)
                      .          ..  -..+.  -|+.|.+|.++.+.|
T Consensus        92 ~~~~~~~~~~~~r~~~~F~~--N~lvIt~VDvqsvEp  126 (128)
T 2zuo_A           92 DTGPDGTLLPKARDQAVFPQ--NGLVVSSVDVQSVEP  126 (128)
T ss_dssp             ----------CCCSCEECTT--TCEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_conf             56766667777766679999--887999999887689


No 6  
>>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} (A:)
Probab=80.79  E-value=3.5  Score=20.02  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76889999999977789999999972322999
Q gi|254780958|r  258 LGSARGEASHIRESSIAYKDRIIQEAQGEADR  289 (355)
Q Consensus       258 ~~~A~geA~~i~~~Aeay~~~~i~~A~gea~r  289 (355)
                      +..|+.+|..|+.+|.-++.+.+-.|+.||..
T Consensus        11 LL~AEk~A~~iV~eARk~k~~RLKqAKeEA~~   42 (60)
T 2k88_A           11 LLQAEKEAHEIVSKARKYRQDKLKQAKTDAAK   42 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99989999999999999999889899999999


No 7  
>>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} (A:)
Probab=76.66  E-value=4.7  Score=19.21  Aligned_cols=27  Identities=22%  Similarity=0.496  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             887889999999999999987768899
Q gi|254780958|r  237 QRAEQDEDRFVEESNKYSNRVLGSARG  263 (355)
Q Consensus       237 ~~A~qe~er~i~eAe~~a~~i~~~A~g  263 (355)
                      ..|+.+....+.+|+..++.|+.+|+.
T Consensus         5 ~eAk~eAa~Ii~~A~kra~qIveeak~   31 (61)
T 1l2p_A            5 KKAKAEAQVIIEQANKRRSQILDEAKA   31 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999889999999999


No 8  
>>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii} (A:)
Probab=50.28  E-value=3.4  Score=20.13  Aligned_cols=37  Identities=27%  Similarity=0.347  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999887889999999999999987768899999
Q gi|254780958|r  230 ADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEAS  266 (355)
Q Consensus       230 ~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~A~geA~  266 (355)
                      .+|+.+|--|++..-+.|.||...+.+|.++|--||.
T Consensus        15 meaikevklaeeqavkeieeaknraeqikaeaieeak   51 (56)
T 2k6i_A           15 MEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAK   51 (56)
T ss_dssp             TTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999998888999999999988189998899999998


No 9  
>>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} (A:238-274,A:479-495)
Probab=29.40  E-value=31  Score=13.77  Aligned_cols=46  Identities=26%  Similarity=0.451  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHCHHHHHHHHHHHHHHHHHCC-CCEEEEECCCCEEEEE
Q ss_conf             999999998699999999999999998379-9599996799847540
Q gi|254780958|r  290 FLSIYGQYVNAPTLLRKRIYLETMEGILKK-AKKVIIDKKQSVMPYL  335 (355)
Q Consensus       290 f~~i~~~Y~~ap~vt~~rlylet~~~vl~~-~~k~ii~~~~~~~~yL  335 (355)
                      |+=++.+|...-+---.+||.++|..|... .+|++.+.....+|.|
T Consensus         8 YEYLlK~~illGd~~y~~My~~A~~aI~kh~~~~~~~~~~~~~~~~~   54 (54)
T 1dl2_A            8 YEYLLKQYLLTHETLYYDLYRKSMEGMKKHDLTKVVFNTEAHPFPVL   54 (54)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCTTSEEECTTSCEEECC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf             77888888727867888999999999998776675788888867668


No 10 
>>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:1-95)
Probab=29.37  E-value=16  Score=15.62  Aligned_cols=12  Identities=25%  Similarity=0.520  Sum_probs=9.2

Q ss_pred             CCCCCCEECCCC
Q ss_conf             558983664575
Q gi|254780958|r   90 VFLPGLHMMFWP  101 (355)
Q Consensus        90 v~~pGlh~~~pp  101 (355)
                      ..+||++||+|-
T Consensus        38 ~~EpG~iWKIWT   49 (95)
T 2hiq_A           38 NQEPGFLWKVWT   49 (95)
T ss_dssp             TTSTTEEEEEEE
T ss_pred             CCCCCCEEEEEE
T ss_conf             059981588987


No 11 
>>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens} (B:)
Probab=28.38  E-value=32  Score=13.65  Aligned_cols=36  Identities=14%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHH
Q ss_conf             67887779999888631234617987534301562578
Q gi|254780958|r  191 RQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE  228 (355)
Q Consensus       191 R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~  228 (355)
                      -..+..+..+.-.+.++.|  -+.|.+|.++++.+|..
T Consensus        17 ~~~VktQf~q~k~eAa~rY--NLtIS~VsV~dv~fPsS   52 (55)
T 2acm_B           17 VHDVETQFNQYKTEAASRY--NLTISDVSVSDVPFPFS   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CCCEEEEEEECC-----
T ss_pred             HHHHHHHHHHHHHHHHHCC--CEEEEEEEEEECCCCCC
T ss_conf             8899999988655232101--33765668764138864


No 12 
>>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} (B:)
Probab=27.51  E-value=33  Score=13.55  Aligned_cols=17  Identities=12%  Similarity=0.089  Sum_probs=10.5

Q ss_pred             HHCCCCCCCCCEECCCC
Q ss_conf             31135558983664575
Q gi|254780958|r   85 KPKNDVFLPGLHMMFWP  101 (355)
Q Consensus        85 k~~~~v~~pGlh~~~pp  101 (355)
                      ++......|||-|.|.+
T Consensus        72 ~~~~~~s~PGL~~rP~~   88 (290)
T 3ixz_B           72 DYQDQLKSPGVTLRPDV   88 (290)
T ss_pred             CCCCCCCCCCCEECCCC
T ss_conf             75346789852321457


No 13 
>>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative; 2.80A {Thermotoga maritima} (A:33-214)
Probab=27.20  E-value=34  Score=13.52  Aligned_cols=19  Identities=16%  Similarity=0.072  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHCCCCC
Q ss_conf             9888777677775301000
Q gi|254780958|r  166 LKQVSESAMREVVGRRFAV  184 (355)
Q Consensus       166 l~~~~esalR~vvg~~~~d  184 (355)
                      +.-..-++|-+-|+++|+.
T Consensus        10 l~galg~aL~~MV~~LT~g   28 (182)
T 1o5h_A           10 VVGAXACALAEXVANFTRK   28 (182)
T ss_dssp             HHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHHHHHHCC
T ss_conf             9999999999999998778


No 14 
>>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} (A:)
Probab=25.89  E-value=21  Score=14.91  Aligned_cols=13  Identities=23%  Similarity=0.411  Sum_probs=9.0

Q ss_pred             CCCCCCEECCCCC
Q ss_conf             5589836645753
Q gi|254780958|r   90 VFLPGLHMMFWPI  102 (355)
Q Consensus        90 v~~pGlh~~~ppi  102 (355)
                      ..+||+.||+|-.
T Consensus        53 n~EpGliWKIWTE   65 (123)
T 2asy_A           53 NQEPGFLWKVWTE   65 (123)
T ss_dssp             TCCCCBSCCCCBC
T ss_pred             HCCCCCEEEEEEE
T ss_conf             4299806899875


No 15 
>>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} (A:186-282)
Probab=21.55  E-value=32  Score=13.62  Aligned_cols=49  Identities=10%  Similarity=0.162  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf             8877767777530100000155467887779999888631234617987534
Q gi|254780958|r  168 QVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTIS  219 (355)
Q Consensus       168 ~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~  219 (355)
                      ...+..+++.+.+...+-++-+ +-.+....+..+.+.++..  |++|....
T Consensus        40 ~l~~~~i~~a~e~s~~~~a~iD-~Ks~k~~~r~~i~~~l~~~--gl~v~k~~   88 (97)
T 1yqe_A           40 HLTAEFLVKAVKLSEAEYIIID-EKSVNSAVKKIVNEAAEVA--GVEVLKSK   88 (97)
T ss_dssp             GCCHHHHHHHHHHHTCSEEEEC-TTTCCHHHHHHHHHHHHHH--TCEEEEHH
T ss_pred             CCCHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHC--CCEEEEHH
T ss_conf             0799999999871788689997-6779878999999999976--97587436


No 16 
>>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} (A:1-118,A:269-356)
Probab=21.06  E-value=44  Score=12.75  Aligned_cols=18  Identities=11%  Similarity=-0.088  Sum_probs=8.4

Q ss_pred             EEEEEEEEEEECC-HHHHH
Q ss_conf             8763443422158-87853
Q gi|254780958|r  139 VGLHFSVLYVVTD-PRLYL  156 (355)
Q Consensus       139 V~v~~~V~yrI~D-p~~~~  156 (355)
                      +.++..+||.=.+ ..+|+
T Consensus       111 ts~~allq~~~~~tlfDYL  129 (206)
T 2eyq_A          111 VPVNTLMQSEPLPPLFSYF  129 (206)
T ss_dssp             EEHHHHTBSSCCCBGGGGS
T ss_pred             EEHHHHHCCCCCCCHHHHC
T ss_conf             7579972578877588747


Done!