HHsearch results for GI: 254780958 and protein with PDBid: 3bk6_A
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.94 E-value=1.6e-25 Score=187.68 Aligned_cols=176 Identities=19% Similarity=0.317 Sum_probs=145.8
Q ss_pred CCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 53236872204899982672211476650366068418876344342215887853201298999988877767777530
Q gi|254780958|r 101 PIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGR 180 (355)
Q Consensus 101 pi~~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~~v~~~~~~l~~~~esalR~vvg~ 180 (355)
-|+++.++|++.+.++++.+. ++|+|++.|.++++|+|||+||.+|++++.++...+...+++++|+++|+
T Consensus 2 ii~~~~~vD~R~~~~~i~~q~---------v~T~D~~~v~v~~~v~yrI~dp~~~~~~~~~~~~~l~~~~~~~lr~~i~~ 72 (188)
T 3bk6_A 2 IFEKAVIVDLRTQVLDVPVQE---------TITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQISQTTLRSVIGQ 72 (188)
T ss_dssp CEEECCCCCSSCEEEEEEEEE---------EECTTSCEEEEEEEEEEEESCHHHHHHSSSCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEEEEEEEEECCCCE---------EECCCCCEEEEEEEEEEEECCHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 688638997257876179865---------77389998999899999989879998744799999999999999988501
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10000015546788777999988863123461798753430156257899999999887889999999999999987768
Q gi|254780958|r 181 RFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGS 260 (355)
Q Consensus 181 ~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A~qe~er~i~eAe~~a~~i~~~ 260 (355)
+++++++++ |..+...+...+...++.| ||+|.+|+|+++.||+++..||++++.|++++++.+.+|++++.. ++
T Consensus 73 ~~l~eil~~-r~~i~~~~~~~~~~~~~~~--Gi~v~~V~I~di~~p~~v~~ai~~~~~Ae~e~~a~~~~Ae~e~~~--ae 147 (188)
T 3bk6_A 73 AHLDELLSE-RDKLNMQLQRIIDEATDPW--GIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA--AE 147 (188)
T ss_dssp SCHHHHHHC-HHHHHHHHHHHHHHHTGGG--TEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_pred CCHHHHHHH-HHHHHHHHHHHHHHHHHHC--CEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
T ss_conf 658999864-7777678999999888732--869999873467998779999999999999999999998999999--99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC
Q ss_conf 89999999977789999999972322999999999998699999999999999998379
Q gi|254780958|r 261 ARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRIYLETMEGILKK 319 (355)
Q Consensus 261 A~geA~~i~~~Aeay~~~~i~~A~gea~rf~~i~~~Y~~ap~vt~~rlylet~~~vl~~ 319 (355)
+.++|+++ +..+|...+.| |+|||+++.++
T Consensus 148 ~~~~aa~~----------------------------~~e~~~a~~lr-~~q~i~~i~~~ 177 (188)
T 3bk6_A 148 KLREAAEI----------------------------ISEHPMALQLR-TLQTISDVAGD 177 (188)
T ss_dssp HHHHHHHH----------------------------HHHCTTHHHHH-HTTC-------
T ss_pred HHHHHHHH----------------------------HHCCHHHHHHH-HHHHHHHHHHC
T ss_conf 99999999----------------------------85299999999-99999999716