Query         gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 355
No_of_seqs    241 out of 2352
Neff          7.0 
Searched_HMMs 13730
Date          Wed Jun  1 11:06:22 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780958.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1wina_ d.43.2.1 (A:) Flotilli  99.7 1.8E-17 1.3E-21  132.5   3.6  124  104-239     6-138 (143)
  2 d1l2pa_ f.23.21.1 (A:) F1F0 AT  84.9       1 7.3E-05   21.1   8.3   43  237-286     5-47  (61)
  3 d1icpa_ c.1.4.1 (A:) 12-oxophy  14.1      20  0.0015   12.4   0.3   18  160-177   151-168 (364)
  4 d1gwja_ c.1.4.1 (A:) Morphinon  12.5      29  0.0021   11.4   1.6   16  162-177   158-173 (374)
  5 d1y88a1 a.60.4.3 (A:128-186) H  12.1      29  0.0021   11.3   1.6   25  234-258    25-49  (59)
  6 d5ruba2 d.58.9.1 (A:2-137) Rib   9.9      25  0.0018   11.7  -0.3   37  197-234    99-136 (136)
  7 d1ykwa2 d.58.9.1 (A:4-145) Rib   9.2      25  0.0018   11.8  -0.6   38  196-233   104-142 (142)
  8 d1q45a_ c.1.4.1 (A:) 12-oxophy   8.8      36  0.0026   10.7   0.1   23  159-181   151-173 (380)
  9 d1h3oa_ a.22.1.3 (A:) TAF(II)-   8.7      39  0.0028   10.5   3.8   40  169-208     7-46  (50)
 10 d1oyaa_ c.1.4.1 (A:) Old yello   8.4      34  0.0025   10.8  -0.1   74  158-237   162-235 (399)

No 1  
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.65  E-value=1.8e-17  Score=132.54  Aligned_cols=124  Identities=15%  Similarity=0.167  Sum_probs=106.4

Q ss_pred             EEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHH---------HHCCHHHHHHHHHHHHH
Q ss_conf             368722048999826722114766503660684188763443422158878532---------01298999988877767
Q gi|254780958|r  104 QVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLF---------NLENPGETLKQVSESAM  174 (355)
Q Consensus       104 ~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~---------~v~~~~~~l~~~~esal  174 (355)
                      ++.+++.+.+.+++..+.+         +|+|+..|+|+++++|||.||.++++         ++.+++..++..++++|
T Consensus         6 s~~rislr~~~l~~~~q~v---------~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~l   76 (143)
T d1wina_           6 SGQRISLEIMTLQPRCEDV---------ETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHL   76 (143)
T ss_dssp             CCCSCCCSCEEECCCEEEE---------ECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEEECCCCCEE---------ECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf             5057652678615887367---------9789978999999999984808888888876503658899999999999999


Q ss_pred             HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             77753010000015546788777999988863123461798753430156257899999999887
Q gi|254780958|r  175 REVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRA  239 (355)
Q Consensus       175 R~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A  239 (355)
                      |+++|+++++++++ +|++|+.++++.+++.++.|  ||+|.+|+|+|++||+++.+|+...+.|
T Consensus        77 R~vig~~~l~el~~-~R~~i~~~v~~~i~~~l~~~--Gi~v~~v~I~dI~~~~~~~~a~~~~q~A  138 (143)
T d1wina_          77 RSILGTLTVEQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGKTQTS  138 (143)
T ss_dssp             HHHHHHSCHHHHHH-THHHHHHHHHHHHHHHHTTT--TEEEEEEECCCEECTTCHHHHHCCCCCC
T ss_pred             HHHHCCCCHHHHHH-CHHHHHHHHHHHHHHHHHHH--CEEEEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             98752366899985-79999999999999999973--8189899999618839999999999986


No 2  
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}
Probab=84.89  E-value=1  Score=21.06  Aligned_cols=43  Identities=26%  Similarity=0.485  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88788999999999999998776889999999977789999999972322
Q gi|254780958|r  237 QRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGE  286 (355)
Q Consensus       237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~ge  286 (355)
                      ..|+.+....+.+|+..++.|+.+|+.+       |..++.++++.|+.+
T Consensus         5 ~eAK~eAa~Ii~qA~~ra~qIveeak~~-------A~~Ea~rI~~~A~~e   47 (61)
T d1l2pa_           5 KKAKAEAQVIIEQANKRRSQILDEAKAE-------AEQERTKIVAQAQAE   47 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_conf             9999999999999998899999999999-------999999999989999


No 3  
>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}
Probab=14.12  E-value=20  Score=12.39  Aligned_cols=18  Identities=6%  Similarity=0.150  Sum_probs=6.9

Q ss_pred             CCHHHHHHHHHHHHHHHH
Q ss_conf             298999988877767777
Q gi|254780958|r  160 ENPGETLKQVSESAMREV  177 (355)
Q Consensus       160 ~~~~~~l~~~~esalR~v  177 (355)
                      .+.+.++...+++|.|..
T Consensus       151 ~eI~~ii~~f~~aA~rA~  168 (364)
T d1icpa_         151 DEIPQIVNEFRVAARNAI  168 (364)
T ss_dssp             TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             679999998899999999


No 4  
>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}
Probab=12.52  E-value=29  Score=11.38  Aligned_cols=16  Identities=13%  Similarity=0.090  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8999988877767777
Q gi|254780958|r  162 PGETLKQVSESAMREV  177 (355)
Q Consensus       162 ~~~~l~~~~esalR~v  177 (355)
                      -++.+...+++|.|..
T Consensus       158 I~~ii~~f~~AA~rA~  173 (374)
T d1gwja_         158 IPGIVEDYRQAAQRAK  173 (374)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 5  
>d1y88a1 a.60.4.3 (A:128-186) Hypothetical protein AF1548, C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=12.07  E-value=29  Score=11.29  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=13.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9998878899999999999999877
Q gi|254780958|r  234 DEVQRAEQDEDRFVEESNKYSNRVL  258 (355)
Q Consensus       234 ~~v~~A~qe~er~i~eAe~~a~~i~  258 (355)
                      +||..|-+++-|.|--.-..+.+++
T Consensus        25 rdvvsageeklreiglsakkarevi   49 (59)
T d1y88a1          25 RDVVSAGEEKLREIGLSAKKAREVI   49 (59)
T ss_dssp             HHHHHHCHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf             9777610999999640067899999


No 6  
>d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]}
Probab=9.92  E-value=25  Score=11.74  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHCCCCCEE-EEEEEEEECCCHHHHHHHHHH
Q ss_conf             79999888631234617-987534301562578999999
Q gi|254780958|r  197 EVRNLIQKTMDYYKSGI-LINTISIEDASPPREVADAFD  234 (355)
Q Consensus       197 ~v~~~lq~~l~~y~~GI-~V~~V~i~~v~~P~~v~~A~~  234 (355)
                      .+-..|..++-. ..|+ .|..++|.|+.+|+.+.+.|+
T Consensus        99 ~i~~Llt~I~GN-~fg~~~v~~lRL~Di~~P~~~l~~Fd  136 (136)
T d5ruba2          99 MIASFLTLTMGN-NQGMGDVEYAKMHDFYVPEAYRALFD  136 (136)
T ss_dssp             CHHHHHHHHHSG-GGSCSSEEEEEEEEEECCHHHHTTSC
T ss_pred             CHHHHHHHHHCC-CCCCCCCCCCEEEEECCCHHHHHHCC
T ss_conf             599999999764-14624110136765339999996359


No 7  
>d1ykwa2 d.58.9.1 (A:4-145) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}
Probab=9.18  E-value=25  Score=11.77  Aligned_cols=38  Identities=13%  Similarity=0.083  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHCCCCCEE-EEEEEEEECCCHHHHHHHHH
Q ss_conf             779999888631234617-98753430156257899999
Q gi|254780958|r  196 LEVRNLIQKTMDYYKSGI-LINTISIEDASPPREVADAF  233 (355)
Q Consensus       196 ~~v~~~lq~~l~~y~~GI-~V~~V~i~~v~~P~~v~~A~  233 (355)
                      ..+-..|...+-....|+ .+..++|.|+.+|+++.++|
T Consensus       104 ~~l~~ll~~i~GN~~~~~~~v~~~rL~Di~~P~~~~~~F  142 (142)
T d1ykwa2         104 PKIPNLLTAVCGEGTYFTPGVPVVKLMDIHFPDTYLADF  142 (142)
T ss_dssp             SCHHHHHHHHSSHHHHCCTTCCEEEEEEEECCHHHHTTC
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHHHC
T ss_conf             648889999865442265654445899743999999409


No 8  
>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}
Probab=8.76  E-value=36  Score=10.69  Aligned_cols=23  Identities=9%  Similarity=0.021  Sum_probs=10.2

Q ss_pred             HCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf             12989999888777677775301
Q gi|254780958|r  159 LENPGETLKQVSESAMREVVGRR  181 (355)
Q Consensus       159 v~~~~~~l~~~~esalR~vvg~~  181 (355)
                      ..+.++.+...+++|.|..-+-+
T Consensus       151 ~~eI~~ii~~f~~aA~~A~~aGf  173 (380)
T d1q45a_         151 ASEIPRVVEDYCLSALNAIRAGF  173 (380)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             78899999999999999998286


No 9  
>d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.69  E-value=39  Score=10.50  Aligned_cols=40  Identities=5%  Similarity=0.056  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf             8777677775301000001554678877799998886312
Q gi|254780958|r  169 VSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDY  208 (355)
Q Consensus       169 ~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~  208 (355)
                      ..+..++++..++.++|+-.+--.-|+..++++|+..+++
T Consensus         7 ~Lq~ri~~I~~k~Gl~e~~~dV~~lISHA~QeRLk~lvEK   46 (50)
T d1h3oa_           7 PLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEK   46 (50)
T ss_dssp             HHHHHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999884987667899999889999999999998


No 10 
>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}
Probab=8.39  E-value=34  Score=10.85  Aligned_cols=74  Identities=19%  Similarity=0.153  Sum_probs=0.0

Q ss_pred             HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             01298999988877767777530100000155467887779999888631234617987534301562578999999998
Q gi|254780958|r  158 NLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQ  237 (355)
Q Consensus       158 ~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~  237 (355)
                      +..+.++.+...+++|.|..-+-++.-|+....--.+.+=+-...+.+.|.|  |=.+++    +..++-+|.++++++.
T Consensus       162 t~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeY--GGSlEN----R~Rf~~Eii~aIR~~v  235 (399)
T d1oyaa_         162 TKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEY--GGSIEN----RARFTLEVVDALVEAI  235 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTT--SSSHHH----HTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHH----HHHHHHHHHHHHHHEE
T ss_conf             5677888888999999999980975676124377789986413035665224--765665----4577999987543402


Done!