Query gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 355 No_of_seqs 241 out of 2352 Neff 7.0 Searched_HMMs 13730 Date Wed Jun 1 11:06:22 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780958.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1wina_ d.43.2.1 (A:) Flotilli 99.7 1.8E-17 1.3E-21 132.5 3.6 124 104-239 6-138 (143) 2 d1l2pa_ f.23.21.1 (A:) F1F0 AT 84.9 1 7.3E-05 21.1 8.3 43 237-286 5-47 (61) 3 d1icpa_ c.1.4.1 (A:) 12-oxophy 14.1 20 0.0015 12.4 0.3 18 160-177 151-168 (364) 4 d1gwja_ c.1.4.1 (A:) Morphinon 12.5 29 0.0021 11.4 1.6 16 162-177 158-173 (374) 5 d1y88a1 a.60.4.3 (A:128-186) H 12.1 29 0.0021 11.3 1.6 25 234-258 25-49 (59) 6 d5ruba2 d.58.9.1 (A:2-137) Rib 9.9 25 0.0018 11.7 -0.3 37 197-234 99-136 (136) 7 d1ykwa2 d.58.9.1 (A:4-145) Rib 9.2 25 0.0018 11.8 -0.6 38 196-233 104-142 (142) 8 d1q45a_ c.1.4.1 (A:) 12-oxophy 8.8 36 0.0026 10.7 0.1 23 159-181 151-173 (380) 9 d1h3oa_ a.22.1.3 (A:) TAF(II)- 8.7 39 0.0028 10.5 3.8 40 169-208 7-46 (50) 10 d1oyaa_ c.1.4.1 (A:) Old yello 8.4 34 0.0025 10.8 -0.1 74 158-237 162-235 (399) No 1 >d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=99.65 E-value=1.8e-17 Score=132.54 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=106.4 Q ss_pred EEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEEEEEEEEEEEECCHHHHHH---------HHCCHHHHHHHHHHHHH Q ss_conf 368722048999826722114766503660684188763443422158878532---------01298999988877767 Q gi|254780958|r 104 QVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLF---------NLENPGETLKQVSESAM 174 (355) Q Consensus 104 ~v~~v~v~~~~~~~~~~~~~~~~~~~~mLT~D~n~V~v~~~V~yrI~Dp~~~~~---------~v~~~~~~l~~~~esal 174 (355) ++.+++.+.+.+++..+.+ +|+|+..|+|+++++|||.||.++++ ++.+++..++..++++| T Consensus 6 s~~rislr~~~l~~~~q~v---------~TkD~v~v~V~a~v~~rV~~~~~~~~~a~~~~l~~~~~~~~~~i~~~~~~~l 76 (143) T d1wina_ 6 SGQRISLEIMTLQPRCEDV---------ETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHL 76 (143) T ss_dssp CCCSCCCSCEEECCCEEEE---------ECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHH T ss_pred CEEEEEEEEEEECCCCCEE---------ECCCCCEEEEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH T ss_conf 5057652678615887367---------9789978999999999984808888888876503658899999999999999 Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 77753010000015546788777999988863123461798753430156257899999999887 Q gi|254780958|r 175 REVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRA 239 (355) Q Consensus 175 R~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~~A 239 (355) |+++|+++++++++ +|++|+.++++.+++.++.| ||+|.+|+|+|++||+++.+|+...+.| T Consensus 77 R~vig~~~l~el~~-~R~~i~~~v~~~i~~~l~~~--Gi~v~~v~I~dI~~~~~~~~a~~~~q~A 138 (143) T d1wina_ 77 RSILGTLTVEQIYQ-DRDQFAKLVREVAAPDVGRM--GIEILSFTIKDVYDKVDYLSSLGKTQTS 138 (143) T ss_dssp HHHHHHSCHHHHHH-THHHHHHHHHHHHHHHHTTT--TEEEEEEECCCEECTTCHHHHHCCCCCC T ss_pred HHHHCCCCHHHHHH-CHHHHHHHHHHHHHHHHHHH--CEEEEEEEEEECCCCHHHHHHHHHHHHH T ss_conf 98752366899985-79999999999999999973--8189899999618839999999999986 No 2 >d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]} Probab=84.89 E-value=1 Score=21.06 Aligned_cols=43 Identities=26% Similarity=0.485 Sum_probs=22.5 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 88788999999999999998776889999999977789999999972322 Q gi|254780958|r 237 QRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGE 286 (355) Q Consensus 237 ~~A~qe~er~i~eAe~~a~~i~~~A~geA~~i~~~Aeay~~~~i~~A~ge 286 (355) ..|+.+....+.+|+..++.|+.+|+.+ |..++.++++.|+.+ T Consensus 5 ~eAK~eAa~Ii~qA~~ra~qIveeak~~-------A~~Ea~rI~~~A~~e 47 (61) T d1l2pa_ 5 KKAKAEAQVIIEQANKRRSQILDEAKAE-------AEQERTKIVAQAQAE 47 (61) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH T ss_conf 9999999999999998899999999999-------999999999989999 No 3 >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} Probab=14.12 E-value=20 Score=12.39 Aligned_cols=18 Identities=6% Similarity=0.150 Sum_probs=6.9 Q ss_pred CCHHHHHHHHHHHHHHHH Q ss_conf 298999988877767777 Q gi|254780958|r 160 ENPGETLKQVSESAMREV 177 (355) Q Consensus 160 ~~~~~~l~~~~esalR~v 177 (355) .+.+.++...+++|.|.. T Consensus 151 ~eI~~ii~~f~~aA~rA~ 168 (364) T d1icpa_ 151 DEIPQIVNEFRVAARNAI 168 (364) T ss_dssp TTHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 679999998899999999 No 4 >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} Probab=12.52 E-value=29 Score=11.38 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=6.1 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 8999988877767777 Q gi|254780958|r 162 PGETLKQVSESAMREV 177 (355) Q Consensus 162 ~~~~l~~~~esalR~v 177 (355) -++.+...+++|.|.. T Consensus 158 I~~ii~~f~~AA~rA~ 173 (374) T d1gwja_ 158 IPGIVEDYRQAAQRAK 173 (374) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 5 >d1y88a1 a.60.4.3 (A:128-186) Hypothetical protein AF1548, C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Probab=12.07 E-value=29 Score=11.29 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=13.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9998878899999999999999877 Q gi|254780958|r 234 DEVQRAEQDEDRFVEESNKYSNRVL 258 (355) Q Consensus 234 ~~v~~A~qe~er~i~eAe~~a~~i~ 258 (355) +||..|-+++-|.|--.-..+.+++ T Consensus 25 rdvvsageeklreiglsakkarevi 49 (59) T d1y88a1 25 RDVVSAGEEKLREIGLSAKKAREVI 49 (59) T ss_dssp HHHHHHCHHHHHHTTCCHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH T ss_conf 9777610999999640067899999 No 6 >d5ruba2 d.58.9.1 (A:2-137) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rhodospirillum rubrum [TaxId: 1085]} Probab=9.92 E-value=25 Score=11.74 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=23.1 Q ss_pred HHHHHHHHHHCCCCCEE-EEEEEEEECCCHHHHHHHHHH Q ss_conf 79999888631234617-987534301562578999999 Q gi|254780958|r 197 EVRNLIQKTMDYYKSGI-LINTISIEDASPPREVADAFD 234 (355) Q Consensus 197 ~v~~~lq~~l~~y~~GI-~V~~V~i~~v~~P~~v~~A~~ 234 (355) .+-..|..++-. ..|+ .|..++|.|+.+|+.+.+.|+ T Consensus 99 ~i~~Llt~I~GN-~fg~~~v~~lRL~Di~~P~~~l~~Fd 136 (136) T d5ruba2 99 MIASFLTLTMGN-NQGMGDVEYAKMHDFYVPEAYRALFD 136 (136) T ss_dssp CHHHHHHHHHSG-GGSCSSEEEEEEEEEECCHHHHTTSC T ss_pred CHHHHHHHHHCC-CCCCCCCCCCEEEEECCCHHHHHHCC T ss_conf 599999999764-14624110136765339999996359 No 7 >d1ykwa2 d.58.9.1 (A:4-145) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} Probab=9.18 E-value=25 Score=11.77 Aligned_cols=38 Identities=13% Similarity=0.083 Sum_probs=21.2 Q ss_pred HHHHHHHHHHHCCCCCEE-EEEEEEEECCCHHHHHHHHH Q ss_conf 779999888631234617-98753430156257899999 Q gi|254780958|r 196 LEVRNLIQKTMDYYKSGI-LINTISIEDASPPREVADAF 233 (355) Q Consensus 196 ~~v~~~lq~~l~~y~~GI-~V~~V~i~~v~~P~~v~~A~ 233 (355) ..+-..|...+-....|+ .+..++|.|+.+|+++.++| T Consensus 104 ~~l~~ll~~i~GN~~~~~~~v~~~rL~Di~~P~~~~~~F 142 (142) T d1ykwa2 104 PKIPNLLTAVCGEGTYFTPGVPVVKLMDIHFPDTYLADF 142 (142) T ss_dssp SCHHHHHHHHSSHHHHCCTTCCEEEEEEEECCHHHHTTC T ss_pred CCHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHHHC T ss_conf 648889999865442265654445899743999999409 No 8 >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} Probab=8.76 E-value=36 Score=10.69 Aligned_cols=23 Identities=9% Similarity=0.021 Sum_probs=10.2 Q ss_pred HCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 12989999888777677775301 Q gi|254780958|r 159 LENPGETLKQVSESAMREVVGRR 181 (355) Q Consensus 159 v~~~~~~l~~~~esalR~vvg~~ 181 (355) ..+.++.+...+++|.|..-+-+ T Consensus 151 ~~eI~~ii~~f~~aA~~A~~aGf 173 (380) T d1q45a_ 151 ASEIPRVVEDYCLSALNAIRAGF 173 (380) T ss_dssp GGGHHHHHHHHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHCC T ss_conf 78899999999999999998286 No 9 >d1h3oa_ a.22.1.3 (A:) TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain {Human (Homo sapiens) [TaxId: 9606]} Probab=8.69 E-value=39 Score=10.50 Aligned_cols=40 Identities=5% Similarity=0.056 Sum_probs=26.0 Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC Q ss_conf 8777677775301000001554678877799998886312 Q gi|254780958|r 169 VSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDY 208 (355) Q Consensus 169 ~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~ 208 (355) ..+..++++..++.++|+-.+--.-|+..++++|+..+++ T Consensus 7 ~Lq~ri~~I~~k~Gl~e~~~dV~~lISHA~QeRLk~lvEK 46 (50) T d1h3oa_ 7 PLQRRILEIGKKHGITELHPDVVSYVSHATQQRLQNLVEK 46 (50) T ss_dssp HHHHHHHHHHHTTTCCEECTTHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999999999884987667899999889999999999998 No 10 >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} Probab=8.39 E-value=34 Score=10.85 Aligned_cols=74 Identities=19% Similarity=0.153 Sum_probs=0.0 Q ss_pred HHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 01298999988877767777530100000155467887779999888631234617987534301562578999999998 Q gi|254780958|r 158 NLENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQ 237 (355) Q Consensus 158 ~v~~~~~~l~~~~esalR~vvg~~~~d~ilt~~R~~i~~~v~~~lq~~l~~y~~GI~V~~V~i~~v~~P~~v~~A~~~v~ 237 (355) +..+.++.+...+++|.|..-+-++.-|+....--.+.+=+-...+.+.|.| |=.+++ +..++-+|.++++++. T Consensus 162 t~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~aHGYLl~qFLSp~tN~RtDeY--GGSlEN----R~Rf~~Eii~aIR~~v 235 (399) T d1oyaa_ 162 TKDEIKQYIKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEY--GGSIEN----RARFTLEVVDALVEAI 235 (399) T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTT--SSSHHH----HTHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHH----HHHHHHHHHHHHHHEE T ss_conf 5677888888999999999980975676124377789986413035665224--765665----4577999987543402 Done!