RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62] (355 letters) >gnl|CDD|130988 TIGR01933, hflK, HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367). Length = 261 Score = 247 bits (633), Expect = 3e-66 Identities = 105/271 (38%), Positives = 160/271 (59%), Gaps = 11/271 (4%) Query: 69 IYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNS 128 IY + ER V LRFGK + PGL+ I++V V V + + Sbjct: 1 IYTIGEAERGVVLRFGK-YHRTVDPGLNWKPPFIEEVYPVNV-TAVRNLR--------KQ 50 Query: 129 GLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFR 188 GL+LTGD+NIV + +V Y +TDP YLF++ENP ++L+Q ++SA+R V+G DI Sbjct: 51 GLMLTGDENIVNVEMNVQYRITDPYKYLFSVENPEDSLRQATDSALRGVIGDSTMDDILT 110 Query: 189 SQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVE 248 R QI + + + + +D Y GI + ++ + A PP EV +AFD+V A +DE+R++ Sbjct: 111 EGRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVIIAREDEERYIN 170 Query: 249 ESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRKRI 308 E+ Y+N V+ ARG+A I E + YK+R I A+G+ RF + +Y AP + R+R+ Sbjct: 171 EAEAYANEVVPKARGDAQRIIEEARGYKERRINRAKGDVARFTKLLAEYKKAPDVTRERL 230 Query: 309 YLETMEGILKKAKKV-IIDKKQSVMPYLPLN 338 YLETME +L +KV + DKK + + YLPL+ Sbjct: 231 YLETMEKVLSNTRKVLLDDKKGNNLLYLPLD 261 >gnl|CDD|182847 PRK10930, PRK10930, FtsH protease regulator HflK; Provisional. Length = 419 Score = 176 bits (448), Expect = 8e-45 Identities = 96/275 (34%), Positives = 155/275 (56%), Gaps = 10/275 (3%) Query: 65 AFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASV 124 A Y + ER V RFGK + V PGL+ ID+V+ V V + Sbjct: 93 AASGFYTIKEAERGVVTRFGKFSHLV-EPGLNWKPTFIDEVKPVNV---------EAVRE 142 Query: 125 GSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAV 184 + SG++LT D+N+V + +V Y VTDP YLF++ +P ++L+Q ++SA+R V+G+ Sbjct: 143 LAASGVMLTSDENVVRVEMNVQYRVTDPEKYLFSVTSPDDSLRQATDSALRGVIGKYTMD 202 Query: 185 DIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDED 244 I R I + + +++T+ Y GI + ++ + A PP EV AFD+ A ++E Sbjct: 203 RILTEGRTVIRSDTQRELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQ 262 Query: 245 RFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTLL 304 +++ E+ Y+N V A G+A I E + AYK + I EAQGE RF + +Y AP + Sbjct: 263 QYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEIT 322 Query: 305 RKRIYLETMEGILKKAKKVIIDKKQSVMPYLPLNE 339 R+R+Y+ETME +L +KV+++ K + LPL++ Sbjct: 323 RERLYIETMEKVLGHTRKVLVNDKGGNLMVLPLDQ 357 >gnl|CDD|128540 smart00244, PHB, prohibitin homologues. prohibitin homologues. Length = 160 Score = 83.1 bits (206), Expect = 9e-17 Identities = 40/172 (23%), Positives = 78/172 (45%), Gaps = 13/172 (7%) Query: 67 QSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGS 126 +I +V E V R G+ V PGLH + P + KV R Q Sbjct: 1 AAIKVVGEGEAGVVERLGR-VLRVLGPGLHFL-IPFID-RVKKVDLRAQTDDVPP----- 52 Query: 127 NSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENP-GETLKQVSESAMREVVGRRFAVD 185 I+T D V + V Y V DP ++ + + ++Q++++ +R V+G+ + Sbjct: 53 --QEIITKDNVKVSVDAVVYYRVLDPLKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDE 110 Query: 186 IFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQ 237 + +R++I+ +R + + + + GI + + I+D P E+ +A ++ Q Sbjct: 111 LLTDEREKISENIREELNERAEAW--GIEVEDVEIKDIRLPEEIQEAMEQQQ 160 >gnl|CDD|162612 TIGR01932, hflC, HflC protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH protease appears to be negative (PubMed:8947034, PubMed:96367). Length = 317 Score = 47.9 bits (114), Expect = 5e-06 Identities = 67/314 (21%), Positives = 108/314 (34%), Gaps = 59/314 (18%) Query: 55 IILLLIGSFCAFQSIYIVHPDERAVELRFGKPKND------VFLPGLHMMFWPIDQVEIV 108 +I+LLI FQ +I+ ER + RFGK D V+ PGLH I+ V+I Sbjct: 8 VIVLLIVVL--FQPFFIIKEGERGIITRFGKILKDNNHHVLVYEPGLHFKIPFIEHVKIF 65 Query: 109 KVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTD-PRLYL----FNLENPG 163 + Q + GR I T ++ + + + + + D + YL + Sbjct: 66 D--AKIQTMDGRPDR-------IPTKEKKDIIIDTYIRWRIEDFKKYYLSTGGGTISAAE 116 Query: 164 ETLKQVSESAMREVVGRRFAVDIFRSQRQQI-------ALEVRNLIQKTMDYYKSGILIN 216 +K+ + +R +G +I RS Q+ AL I K G I Sbjct: 117 VLIKRKIDDRLRSEIGVLGLKEIVRSSNDQLDTLVSKLALNRGGKINKIAMTITKGREIL 176 Query: 217 TISIEDASPPR------EVADAF-------DEVQRAEQDEDRFVEESNKYSNRVLGSARG 263 I + + EV D DE+ E +R E + + Sbjct: 177 AREISQIANSQLKDIGIEVVDVRIKKINYSDELS--ESIYNRMRSEREQIARMHRSQGEE 234 Query: 264 EASHIRESSIAYKDRIIQEAQ-------GEADR-----FLSIYGQYVNAPTLLRKRIYLE 311 +A I + +I+ EA GE D + YG+ + R LE Sbjct: 235 KAEEILGKAEYEVRKILSEAYRTARIIKGEGDAEAAKIYSDAYGKDPEFYSFWRS---LE 291 Query: 312 TMEGILKKAKKVII 325 E K + + Sbjct: 292 AYEKSFKDNQDEKV 305 >gnl|CDD|182913 PRK11029, PRK11029, FtsH protease regulator HflC; Provisional. Length = 334 Score = 34.7 bits (80), Expect = 0.036 Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 13/71 (18%) Query: 48 KSYGSVYIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKND------VFLPGLHMMFWP 101 KS ++ II+L++ + S+++V ER + LRFGK D V+ PGLH Sbjct: 3 KSVIAIIIIVLVV----LYMSVFVVKEGERGIVLRFGKVLRDDDNKPLVYAPGLHF---K 55 Query: 102 IDQVEIVKVIE 112 I +E VK+++ Sbjct: 56 IPFIETVKMLD 66 >gnl|CDD|163099 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. Length = 498 Score = 33.1 bits (76), Expect = 0.13 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 20/97 (20%) Query: 217 TISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASH----IRESS 272 TIS ED P A D VQ FVEE+ LGS R ++ I E Sbjct: 125 TISYEDKDPEL----AKDVVQTLLT---IFVEET-------LGSKRQDSDSAQRFIDEQI 170 Query: 273 IAYKDRIIQEAQGEADRFLSIYGQYV-NAPTLLRKRI 308 Y+ + ++ A+ F G + + I Sbjct: 171 KTYEKK-LEAAENRLKAFKQENGGILPDQEGDYYSEI 206 >gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes. Length = 85 Score = 32.1 bits (73), Expect = 0.22 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 235 EVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIA----YKDRIIQEAQGEA 287 E+++AE+D + +EE+ + + + AR EA + E + + II+EA+ E Sbjct: 3 EIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEI 59 >gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated. Length = 156 Score = 31.7 bits (73), Expect = 0.27 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 12/68 (17%) Query: 228 EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYK------DRIIQ 281 ++AD +RA+++ + + L AR EA+ I E A K + Sbjct: 39 KIADGLAAAERAKKELELAQAKYEA----QLAEARAEAAEIIEQ--AKKRAAQIIEEAKA 92 Query: 282 EAQGEADR 289 EA+ EA R Sbjct: 93 EAEAEAAR 100 >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional. Length = 847 Score = 30.9 bits (70), Expect = 0.52 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Query: 288 DRFLSIYGQYVNAPTLLRKRIYLETMEGILKKAKKVIIDKK 328 DRF+ Y + A L R ++LE +EG + K VIID K Sbjct: 734 DRFMMFYIR--TADKLQRTAVWLENLEGGIDYLKAVIIDDK 772 >gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional. Length = 2033 Score = 30.6 bits (68), Expect = 0.60 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%) Query: 215 INTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSA 261 ++ ED++PP +A + E RAE ED E +YSN LG + Sbjct: 1929 VDETETEDSAPPARLAPSPLETSRAEDSED---SEYPEYSNPRLGKS 1972 >gnl|CDD|181646 PRK09098, PRK09098, type III secretion system protein HrpB; Validated. Length = 233 Score = 28.6 bits (64), Expect = 2.3 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 230 ADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 +AF V + E + VL +AR A I + A + I++ A+ EADR Sbjct: 21 REAFATVLALDAALAAVHAERDA----VLAAARARAERIVAEARAQAEAILEAARREADR 76 >gnl|CDD|185085 PRK15131, PRK15131, mannose-6-phosphate isomerase; Provisional. Length = 389 Score = 28.4 bits (64), Expect = 3.1 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 15/51 (29%) Query: 37 IKDKFDLIPF-FKSYGSVYIILLLIGSFCAFQSIYI-VHPDERAVELRFGK 85 + +F +PF FK +L CA Q + I VHP++RA E+ F K Sbjct: 74 VAKRFGELPFLFK-------VL------CAAQPLSIQVHPNKRAAEIGFAK 111 >gnl|CDD|184402 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional. Length = 336 Score = 27.9 bits (63), Expect = 3.6 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%) Query: 28 FDVEAIIRYIKDKFDLI 44 FD EAIIRYI+ K+ L+ Sbjct: 182 FD-EAIIRYIRKKYKLL 197 >gnl|CDD|179204 PRK01005, PRK01005, V-type ATP synthase subunit E; Provisional. Length = 207 Score = 28.2 bits (63), Expect = 3.6 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Query: 216 NTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIR---ESS 272 + + E P E A A V A++ R + E+ + + +++ SA A ES+ Sbjct: 15 DALREETLKPAEEEAGAI--VHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESA 72 Query: 273 IA 274 + Sbjct: 73 LV 74 >gnl|CDD|162049 TIGR00805, oat, sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. Length = 633 Score = 27.8 bits (62), Expect = 4.7 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 4/45 (8%) Query: 54 YIILLLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMM 98 ++IL + SF AF I V LR P+ GL + Sbjct: 521 FLILFIPLSFIAF----ITAVPLYMVLLRVVNPEEKSLAIGLQWL 561 >gnl|CDD|165863 PLN02219, PLN02219, probable galactinol--sucrose galactosyltransferase 2. Length = 775 Score = 27.7 bits (61), Expect = 5.2 Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Query: 221 EDASPPRE--VADAFDEVQRAEQDEDRFVEESNKYSNRVLG 259 E +PP+ + D + +++ E+DE+ V+E +++ R+ G Sbjct: 227 EGGTPPKFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTG 267 >gnl|CDD|184048 PRK13428, PRK13428, F0F1 ATP synthase subunit delta; Provisional. Length = 445 Score = 27.4 bits (61), Expect = 5.8 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Query: 228 EVADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEA 287 E A A D + A+Q + VE++ + RV+ AR +A I E ++ +A EA Sbjct: 43 ESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAE-------QLRAQADAEA 95 Query: 288 DR 289 +R Sbjct: 96 ER 97 >gnl|CDD|116469 pfam07857, DUF1632, CEO family (DUF1632). These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long. This family has been termed the CEO family for C. elegans ORF. Length = 254 Score = 27.4 bits (61), Expect = 5.8 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%) Query: 34 IRYIKDKFDLIPFFKSYGSVYIILLLIGSFCAFQSIYIV 72 I YIKD L P G Y+ G F ++Y Sbjct: 202 IIYIKDNPPLYPGAPQDGLDYVFSHYTGIFL-TSTVYFF 239 >gnl|CDD|115849 pfam07220, DUF1420, Protein of unknown function (DUF1420). This family consists of several hypothetical putative lipoproteins which seem to be found specifically in the bacterium Leptospira interrogans. Members of this family are typically around 670 resides in length and their function is unknown. Length = 672 Score = 27.2 bits (60), Expect = 6.5 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%) Query: 27 PFDVEAIIRYIKDKFDLIPFFKSYGSVYIILLLIG 61 PF + I + KDKF LI + +++IILLLI Sbjct: 137 PFFLFKEIGFFKDKFALIDIND-FLNLFIILLLIA 170 >gnl|CDD|163550 TIGR03838, queuosine_YadB, glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid. Length = 272 Score = 27.1 bits (61), Expect = 7.1 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 220 IEDASPPREVADAFDEVQR 238 IED PPREV A D++ R Sbjct: 39 IEDLDPPREVPGAADDILR 57 >gnl|CDD|179556 PRK03287, truB, tRNA pseudouridine synthase B; Provisional. Length = 298 Score = 26.8 bits (60), Expect = 9.6 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 5/50 (10%) Query: 75 DERAVELRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASV 124 A L G+ + G++ P +V I + ER GGR+ SV Sbjct: 246 AAEAEALSHGRRLEPAGIDGVYAAVDPDGRV-IALLEER----GGRARSV 290 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.320 0.138 0.394 Gapped Lambda K H 0.267 0.0809 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 5,911,775 Number of extensions: 389645 Number of successful extensions: 891 Number of sequences better than 10.0: 1 Number of HSP's gapped: 876 Number of HSP's successfully gapped: 34 Length of query: 355 Length of database: 5,994,473 Length adjustment: 94 Effective length of query: 261 Effective length of database: 3,963,321 Effective search space: 1034426781 Effective search space used: 1034426781 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.0 bits)