RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus
Liberibacter asiaticus str. psy62]
(355 letters)
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, cell
adhesion; NMR {Mus musculus} (A:)
Length = 143
Score = 76.2 bits (187), Expect = 6e-15
Identities = 18/151 (11%), Positives = 45/151 (29%), Gaps = 21/151 (13%)
Query: 101 PIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNL- 159
+ + + + + T + + + + + L
Sbjct: 3 SGSSGQRISLEIMTLQPRCED---------VETAEGVALTVTGVAQVKIMTEKELLAVAC 53
Query: 160 --------ENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKS 211
++ + Q E +R ++G I++ R Q A VR + +
Sbjct: 54 EQFLGKNVQDIKNVVLQTLEGHLRSILGTLTVEQIYQ-DRDQFAKLVREVAAPDVGRM-- 110
Query: 212 GILINTISIEDASPPREVADAFDEVQRAEQD 242
GI I + +I+D + + + Q +
Sbjct: 111 GIEILSFTIKDVYDKVDYLSSLGKTQTSGPS 141
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii} (A:)
Length = 113
Score = 71.4 bits (175), Expect = 2e-13
Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQ 190
++ D +V + V Y V DP ++N+ + + +++++ +R ++G + S
Sbjct: 19 VICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETL-SG 77
Query: 191 RQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE 228
R I +R + K D + G+ I + I+ PP++
Sbjct: 78 RDIINARLREELDKITDRW--GVKITRVEIQRIDPPKD 113
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii} (A:1-114)
Length = 114
Score = 62.2 bits (151), Expect = 1e-10
Identities = 23/114 (20%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Query: 110 VIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQV 169
+ E+ + R+ + +T D V ++ V + V DP + ++N Q+
Sbjct: 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQI 61
Query: 170 SESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDA 223
S++ +R V+G+ ++ S+R ++ ++++ +I + D + GI + + I+D
Sbjct: 62 SQTTLRSVIGQAHLDELL-SERDKLNMQLQRIIDEATDPW--GIKVTAVEIKDV 112
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A
{Escherichia coli} (A:)
Length = 61
Score = 28.0 bits (63), Expect = 2.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 258 LGSARGEASHIRESSIAYKDRIIQEAQGEADR 289
L A+ EA I E + + +I+ EA+ EA++
Sbjct: 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQ 35
>2kdo_A Ribosome maturation protein SBDS; SBDS protein, protein
structure, RNA-interacting protein, acetylation,
cytoplasm, disease mutation; NMR {Homo sapiens}
(A:105-169)
Length = 65
Score = 27.3 bits (61), Expect = 3.0
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 171 ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTM 206
E AM+++ ++V +S +QQ ALEV +++ M
Sbjct: 32 ERAMKDI---HYSVKTNKSTKQQ-ALEVIKQLKEKM 63
>2wbm_A MTHSBDS, ribosome maturation protein SDO1 homolog;
shwachman-bodian-diamond syndrome protein, ribosome
binding; 1.75A {Methanothermobacterthermautotrophicus}
(A:110-183)
Length = 74
Score = 27.3 bits (61), Expect = 3.1
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 171 ESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTM 206
E AM E R VD F++ +Q V I+ +
Sbjct: 38 EKAMEEA---RVHVDPFKTVDEQ-VNIVLKAIRTKI 69
>3kdq_A Uncharacterized conserved protein; functionally unknown
protein,corynebacterium diphtheriae, structural
genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
(A:)
Length = 154
Score = 27.0 bits (60), Expect = 3.8
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 8/103 (7%)
Query: 195 ALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNKYS 254
AL R Q+ +L E P + E++ + V N+ +
Sbjct: 9 ALAQRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTN 68
Query: 255 NRV-------LGSARGEASHIRESSIAYKDRIIQEAQGEADRF 290
+ L A + + Y D + + DR+
Sbjct: 69 SVTEFSEGXTLADALSVRDALLKKRTLYSD-LADQLTSRQDRY 110
>3kez_A Putative sugar binding protein; structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 1.90A {Bacteroides vulgatus atcc 8482}
(A:1-437)
Length = 437
Score = 26.8 bits (57), Expect = 4.1
Identities = 10/46 (21%), Positives = 12/46 (26%), Gaps = 13/46 (28%)
Query: 75 DERAVEL-----------RFGKPKN--DVFLPGLHMMFWPIDQVEI 107
DER EL R G DV ++ E
Sbjct: 386 DERRKELVAEGHRXYDVIRNGXTVKRIDVKDSDINKTKHNTAYXEY 431
>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET:
GTT; 1.90A {Necator americanus} (A:1-78,A:191-206)
Length = 94
Score = 26.8 bits (59), Expect = 4.9
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 23 DGLPPFDVEAIIRYIKDKF-DLIPFFKSY 50
DG AI RY+ KF IP K +
Sbjct: 57 DGKQLAQSFAIARYLSRKFGFAIPALKKW 85
>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying
enzyme, prostaglandin D2 synthase, vaccine candidate;
HET: GSH; 1.65A {Schistosoma haematobium} (A:1-85)
Length = 85
Score = 26.8 bits (59), Expect = 4.9
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 22 GDGLPPFDVEAIIRYIKDKFDLI 44
G + AI RY+ K ++
Sbjct: 63 GHVKWMVESLAIARYMAKKHHMM 85
>2cvd_A Glutathione-requiring prostaglandin D synthase;
glutathione-S-transferase, isomerase; HET: GSH HQL;
1.45A {Homo sapiens} (A:1-76)
Length = 76
Score = 26.7 bits (59), Expect = 5.3
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 23 DGLPPFDVEAIIRYIKDKFDL 43
DGL AI RY+ DL
Sbjct: 56 DGLTLHQSLAIARYLTKNTDL 76
>1yq1_A Glutathione S-transferase; nematoda, structural genomics,
PSI, protein structure initiative; 3.00A
{Caenorhabditis elegans} (A:1-79)
Length = 79
Score = 26.3 bits (58), Expect = 5.9
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 23 DGLPPFDVEAIIRYIKDKFDL 43
DG AI+RY+ KF
Sbjct: 58 DGFELPQSGAILRYLARKFGF 78
>3gtu_B Glutathione S-transferase; conjugation, detoxification,
cytosolic, heterodimer; 2.80A {Homo sapiens} (B:1-90)
Length = 90
Score = 26.5 bits (58), Expect = 6.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 23 DGLPPFDVEAIIRYIKDKFDL 43
AI+RYI K ++
Sbjct: 69 GKNKITQSNAILRYIARKHNM 89
>3lq7_A Glutathione S-transferase; structural genomics, PSI, protein
structure initiative, nysgrc; 2.30A {Agrobacterium
tumefaciens} (A:1-102,A:212-240)
Length = 131
Score = 26.1 bits (57), Expect = 6.8
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 23 DGLPPFDVEAIIRYIKDKF-DLIPFFK 48
L F+ AI+ +I L P FK
Sbjct: 81 GDLILFESGAIVMHIAQHHSGLRPAFK 107
>2fhe_A GST, protein (glutathione S-transferase); 2.30A {Fasciola
hepatica} (A:1-81)
Length = 81
Score = 26.0 bits (57), Expect = 8.6
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 23 DGLPPFDVEAIIRYIKDKFDLI 44
D AI+RYI DK +I
Sbjct: 60 DKCKLTQSLAILRYIADKHGMI 81
>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural
genomics, center for structural genomics of infectious
diseases, csgid; HET: MSE GTT; 1.20A {Salmonella
enterica subsp} PDB: 1g7o_A (A:1-80,A:168-218)
Length = 131
Score = 25.8 bits (57), Expect = 8.7
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 22 GDGLPPFDVEAIIRYIKDKFD 42
D + I+ Y+ +
Sbjct: 57 DDSRYLPESXDIVHYVDNLDG 77
>1dug_A Chimera of glutathione S-transferase-synthetic
linker-C-terminal fibrinogen gamma...; gamma chain
integrin fragment; HET: GSH; 1.80A {Schistosoma
japonicum} (A:1-81)
Length = 81
Score = 25.9 bits (57), Expect = 8.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 23 DGLPPFDVEAIIRYIKDKFDLI 44
+ AIIRYI DK +++
Sbjct: 60 GDVKLTQSMAIIRYIADKHNML 81
>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein;
2.70A {Escherichia coli} (A:1-81)
Length = 81
Score = 25.9 bits (57), Expect = 8.7
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 23 DGLPPFDVEAIIRYIKDKFDLI 44
+ AIIRYI DK +++
Sbjct: 60 GDVKLTQSMAIIRYIADKHNML 81
>2c4j_A Glutathione S-transferase MU 2; glutathione transferase,
multigene family; HET: GSO; 1.35A {Homo sapiens}
(A:1-87)
Length = 87
Score = 25.6 bits (56), Expect = 9.5
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 23 DGLPPFDVEAIIRYIKDKFDL 43
AI+RYI K +L
Sbjct: 66 GTHKITQSNAILRYIARKHNL 86
>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione
S-transferase; ankyrin binding, carrier
crystallization, ION transport; 2.60A {Rattus
norvegicus} (A:1-82)
Length = 82
Score = 25.6 bits (56), Expect = 9.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 23 DGLPPFDVEAIIRYIKDKFDLI 44
+ AIIRYI DK +++
Sbjct: 61 GDVKLTQSMAIIRYIADKHNML 82
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.320 0.138 0.394
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,709,360
Number of extensions: 122946
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 34
Length of query: 355
Length of database: 4,956,049
Length adjustment: 89
Effective length of query: 266
Effective length of database: 1,947,404
Effective search space: 518009464
Effective search space used: 518009464
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.4 bits)