RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780958|ref|YP_003065371.1| HflK protein [Candidatus Liberibacter asiaticus str. psy62] (355 letters) >2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} Length = 113 Score = 70.4 bits (172), Expect = 5e-13 Identities = 21/98 (21%), Positives = 47/98 (47%), Gaps = 3/98 (3%) Query: 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQVSESAMREVVGRRFAVDIFRSQ 190 ++ D +V + V Y V DP ++N+ + + +++++ +R ++G + S Sbjct: 19 VICKDNVVVTVDAVVYYQVIDPVKAVYNVSDFLMAIVKLAQTNLRAIIGEMELDETL-SG 77 Query: 191 RQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPRE 228 R I +R + K D + G+ I + I+ PP++ Sbjct: 78 RDIINARLREELDKITDRW--GVKITRVEIQRIDPPKD 113 >3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} Length = 188 Score = 66.4 bits (161), Expect = 9e-12 Identities = 33/181 (18%), Positives = 70/181 (38%), Gaps = 7/181 (3%) Query: 110 VIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETLKQV 169 + E+ + R+ + +T D V ++ V + V DP + ++N Q+ Sbjct: 2 IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKNYIMATSQI 61 Query: 170 SESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREV 229 S++ +R V+G+ ++ + + R + + T + GI + + I+D P + Sbjct: 62 SQTTLRSVIGQAHLDELLSERDKLNMQLQRIIDEATDPW---GIKVTAVEIKDVELPAGM 118 Query: 230 ADAFDEVQRAEQDEDRFVEESNKYSNRVLGSARGEASHIRESSIAYKDR---IIQEAQGE 286 A AE++ + + R A I E +A + R I + G+ Sbjct: 119 QKAMARQAEAERERRARITLAEAERQAAEK-LREAAEIISEHPMALQLRTLQTISDVAGD 177 Query: 287 A 287 Sbjct: 178 K 178 >1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} SCOP: d.43.2.1 Length = 143 Score = 53.9 bits (129), Expect = 6e-08 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 12/121 (9%) Query: 131 ILTGDQNIVGLHFSVLYVVTDPRLYLFN---------LENPGETLKQVSESAMREVVGRR 181 + T + + + + + L +++ + Q E +R ++G Sbjct: 24 VETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTL 83 Query: 182 FAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQ 241 V+ R Q A VR + + I I + +I+D + + + Q + Sbjct: 84 -TVEQIYQDRDQFAKLVREVAAPDVGRMG--IEILSFTIKDVYDKVDYLSSLGKTQTSGP 140 Query: 242 D 242 Sbjct: 141 S 141 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 44.5 bits (105), Expect = 4e-05 Identities = 45/211 (21%), Positives = 72/211 (34%), Gaps = 80/211 (37%) Query: 13 TRLSGSNGNGDGLPPFDVEAIIRYIKDKFDLIPFFKSYGSVYIILLLIGSFC--AF--QS 68 + L G+ G+ GL V A+ D ++ FF S +L IG C A+ S Sbjct: 265 SYLKGATGHSQGL----VTAVAIAETDSWE--SFFVSVRKAITVLFFIGVRCYEAYPNTS 318 Query: 69 I--YIVHPDERAVELRFGKPKNDVFLP-----GLHMMFWPIDQVEIVKVIE-------RQ 114 + I+ D ++E G P P L +QV+ + Sbjct: 319 LPPSILE-D--SLENNEGVPS-----PMLSISNL-----TQEQVQ--DYVNKTNSHLPAG 363 Query: 115 QKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDP--RLYLFNLENPGETLKQVSES 172 +++ S L+ G +N VV+ P LY NL TL++ Sbjct: 364 KQV---EIS------LV-NGAKN---------LVVSGPPQSLYGLNL-----TLRKAKAP 399 Query: 173 AMREVVGRRFAVDIFR---SQRQQIALEVRN 200 + +D R S+R L+ N Sbjct: 400 S---------GLDQSRIPFSER---KLKFSN 418 Score = 41.1 bits (96), Expect = 4e-04 Identities = 57/342 (16%), Positives = 105/342 (30%), Gaps = 128/342 (37%) Query: 45 PFFKSYGSV-YIILLLIGSFC-------AFQSIYIVHPDERA--------VEL--RF--- 83 P S+GS+ +++L+ SF F I + A EL +F Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67 Query: 84 -------GKPKN--DV-----------FLPG--LHMM---FWPIDQVEIVK---VIE--- 112 K V +L G +H + + +VK +I+ Sbjct: 68 VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127 Query: 113 RQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLY-LFNLENPGETLKQVSE 171 + + R SNS L + +L +F G T E Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNA-------------QLVAIFG--GQGNTDDYFEE 172 Query: 172 SAMREV--VGRRFAVDIFRSQRQQIALEVRNLIQKTMD---YYKSGI-LINTISIEDASP 225 +R++ D+ + A + LI+ T+D + G+ ++ + +P Sbjct: 173 --LRDLYQTYHVLVGDLIKF----SAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226 Query: 226 PRE-VADAFDEV--------QRAEQDEDRFVEESNKY--SNRVLGSARGE-ASHIRES-- 271 ++ + + Q A Y + ++LG GE S+++ + Sbjct: 227 DKDYLLSI--PISCPLIGVIQLAH------------YVVTAKLLGFTPGELRSYLKGATG 272 Query: 272 -SIAYKDRIIQEAQG--------EADRFLSIYGQYVNAPTLL 304 S QG E D + S + A T+L Sbjct: 273 HS-----------QGLVTAVAIAETDSWESFFVSVRKAITVL 303 Score = 26.4 bits (58), Expect = 9.1 Identities = 29/202 (14%), Positives = 58/202 (28%), Gaps = 77/202 (38%) Query: 12 PTRLSGSNGNGDGLP-PF----DV--EAIIRYIKDKFDL-IPFFKSYGSVYIILLLIGSF 63 P+ L S N +G+P P ++ E + Y+ +K + +P + V I L+ Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYV-NKTNSHLP---AGKQVEIS--LVNGA 374 Query: 64 CAF------QSIYIVHPDERAVELRFGKPKNDVFL-----------PGLHMMFWPI---- 102 QS+Y + L K K L F P+ Sbjct: 375 KNLVVSGPPQSLY-------GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427 Query: 103 ------DQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYL 156 +++ + + + + + V Sbjct: 428 HSHLLVPASDLIN-----KDLVK--------NNVSFNAKD----IQIPV----------- 459 Query: 157 FNLENPGETLKQVSESAMREVV 178 ++ + G L+ +S S +V Sbjct: 460 YDTFD-GSDLRVLSGSISERIV 480 >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* Length = 472 Score = 31.6 bits (70), Expect = 0.31 Identities = 20/135 (14%), Positives = 41/135 (30%), Gaps = 9/135 (6%) Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVT---DPRLYLFNLENPGE 164 + ++E IGGR + G + G++ + + + L L N + + Sbjct: 31 LLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFD 90 Query: 165 TLKQVSESAMREVVGRRFA------VDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTI 218 L Q V + D ++++ + + M L Sbjct: 91 YLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQ 150 Query: 219 SIEDASPPREVADAF 233 A+P V D + Sbjct: 151 PNGPATPVDMVVDYY 165 >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* Length = 662 Score = 30.8 bits (68), Expect = 0.50 Identities = 31/207 (14%), Positives = 78/207 (37%), Gaps = 8/207 (3%) Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDP---RLYLFNLENP-G 163 V ++E + ++GGR A+ + + G + GL + + VV+ L + P Sbjct: 133 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLY 192 Query: 164 ETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDA 223 E Q E+V + F + + L+ L K + ++ L I +++ Sbjct: 193 EANGQAVPKEKDEMVEQEFNRLLEATSYLSHQLDFNVLNNKPVSLGQA--LEVVIQLQEK 250 Query: 224 SPPREVADAFDEVQRAEQDEDRFVEE--SNKYSNRVLGSARGEASHIRESSIAYKDRIIQ 281 E + + ++ + +++ + + + K + L EAS ++ + +++ Sbjct: 251 HVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEFLVK 310 Query: 282 EAQGEADRFLSIYGQYVNAPTLLRKRI 308 + Y + L +++ Sbjct: 311 SKHRDLTALCKEYDELAETQGKLEEKL 337 >2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Length = 669 Score = 29.5 bits (65), Expect = 1.3 Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 244 DRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSI--YGQYVNAP 301 D F ++ Y VL +A R + A + G + + +G+ A Sbjct: 587 DAFDKQDAAYRESVLP----KAVTARVAVEAGIADYWYKYVGLNGAIVGMTTFGESAPAE 642 Query: 302 TLLRKRIYLETMEGILKKAKKVI 324 L + + T++ ++ KAK+++ Sbjct: 643 LLFEE--FGFTVDNVVAKAKELL 663 >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489 Score = 29.1 bits (63), Expect = 1.6 Identities = 17/148 (11%), Positives = 37/148 (25%), Gaps = 9/148 (6%) Query: 108 VKVIERQQKIGGRSASV---------GSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLFN 158 V V+E + + GGR + + + + + + + Y Sbjct: 37 VTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSHITLDYCRE 96 Query: 159 LENPGETLKQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTI 218 L + + + + R A + + G L + Sbjct: 97 LGVEIQGFGNQNANTFVNYQSDTSLSGQSVTYRAAKADTFGYMSELLKKATDQGALDQVL 156 Query: 219 SIEDASPPREVADAFDEVQRAEQDEDRF 246 S ED E F ++ + Sbjct: 157 SREDKDALSEFLSDFGDLSDDGRYLGSS 184 >3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus} Length = 429 Score = 29.2 bits (65), Expect = 1.7 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 12/78 (15%) Query: 46 FFKSYGSVYIIL--LLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPID 103 F+ Y L I F F + +++P E A L K F+PG P Sbjct: 303 MFQPGAIFYNFLYVTFIVFFTYFYTAVLINPVELAENLH----KAGAFIPG----VRPGQ 354 Query: 104 QVE--IVKVIERQQKIGG 119 + ++I R G Sbjct: 355 DTVKYLERIINRLIFFGA 372 >1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Length = 680 Score = 28.7 bits (63), Expect = 2.1 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 9/98 (9%) Query: 244 DRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSIYGQYVNAPTL 303 F ++ +Y VL S + + + ++ G DRF G AP + Sbjct: 592 FTFDKQPLEYRLSVLPDNVPIMS-VEVLATTCWGKYAHQSFG-IDRF----GASGKAPEV 645 Query: 304 LRKRIYLETMEGILKKAKKVIIDKKQSVMPYLPLNEAF 341 + + T EG+ ++A+K I K + PL +AF Sbjct: 646 FKF--FGFTPEGVAERAQKTIAFYKGDKLIS-PLKKAF 680 >1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} Length = 336 Score = 28.1 bits (60), Expect = 2.8 Identities = 9/31 (29%), Positives = 17/31 (54%) Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNI 138 V + ++ + GGR +S S++G + G Q Sbjct: 28 VHLFDKSRGSGGRMSSKRSDAGALDMGAQYF 58 >2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y Length = 400 Score = 28.0 bits (62), Expect = 3.1 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 8/76 (10%) Query: 46 FFKSYGSVYIIL--LLIGSFCAFQSIYIVHPDERAVELRFGKPKNDVFLPGLHMMFWPID 103 + + +Y++L I FC F + + +P E A L+ K+ F+PG+ Sbjct: 273 YLQPGQPLYVLLYASAIIFFCFFYTALVFNPRETADNLK----KSGAFVPGIRPG--EQT 326 Query: 104 QVEIVKVIERQQKIGG 119 I KV+ R +G Sbjct: 327 AKYIDKVMTRLTLVGA 342 >3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Length = 690 Score = 27.8 bits (61), Expect = 3.5 Identities = 17/84 (20%), Positives = 34/84 (40%), Gaps = 10/84 (11%) Query: 244 DRFVEESNKYSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRFLSI--YGQYVNAP 301 DRF ++ +Y VL A + I + R + G L I +G Sbjct: 614 DRFEAQTAEYKESVLPKAVTKRFAIEMGATFGWHRYV----GLEGDVLGIDTFGASAPGE 669 Query: 302 TLLRK-RIYLETMEGILKKAKKVI 324 ++ + T+E +++K K+++ Sbjct: 670 KIMEEYGF---TVENVVRKVKEML 690 >3jq0_A SUSD superfamily protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE GOL SO4; 1.13A {Bacteroides vulgatus atcc 8482} Length = 493 Score = 27.8 bits (60), Expect = 3.6 Identities = 8/45 (17%), Positives = 11/45 (24%), Gaps = 12/45 (26%) Query: 75 DERAVEL-----------RFGKPKNDVFLPGL-HMMFWPIDQVEI 107 ER E G + + WPID + Sbjct: 436 KERLREFMFEGKRWYDIRLLGWDYVHQYSSAEQSRLLWPIDAGTL 480 >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516 Score = 27.9 bits (60), Expect = 3.7 Identities = 21/139 (15%), Positives = 45/139 (32%), Gaps = 13/139 (9%) Query: 108 VKVIERQQKIGGRSASVGSNSGLIL-TGDQNIVGLHFSVLYVVTDPRLYLFNLENPGETL 166 V+E + ++GGR +V G G + L++ +L L N G T Sbjct: 35 CLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEA-QLSL----NDGRTR 89 Query: 167 KQVSESAMREVVGRRFAVDIFRSQRQQIALEVRNLIQKTMDYYKSGILINTISIEDASPP 226 + + R VD + + ++ M + + + D S Sbjct: 90 FVFDDDNFIYIDEERGRVDHDKE-------LLLEIVDNEMSKFAELEFHQHLGVSDCSFF 142 Query: 227 REVADAFDEVQRAEQDEDR 245 + V + ++ ++ Sbjct: 143 QLVMKYLLQRRQFLTNDQI 161 >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495 Score = 27.8 bits (60), Expect = 3.7 Identities = 10/50 (20%), Positives = 20/50 (40%) Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLYVVTDPRLYLF 157 ++E + +IGGRS S + G + V +T +++ Sbjct: 65 TLLLEARDRIGGRSWSSNIDGYPYEMGGTWVHWHQSHVWREITRYKMHNA 114 >1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1 Length = 61 Score = 27.6 bits (62), Expect = 4.4 Identities = 11/32 (34%), Positives = 19/32 (59%) Query: 258 LGSARGEASHIRESSIAYKDRIIQEAQGEADR 289 L A+ EA I E + + +I+ EA+ EA++ Sbjct: 4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQ 35 >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 Score = 27.2 bits (59), Expect = 5.4 Identities = 9/40 (22%), Positives = 20/40 (50%) Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHFSVLY 147 V ++E + ++GGR A+ + + G + GL + + Sbjct: 304 VTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMA 343 >3iv0_A SUSD homolog; NP_809186.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 481 Score = 27.3 bits (59), Expect = 5.6 Identities = 11/52 (21%), Positives = 14/52 (26%), Gaps = 19/52 (36%) Query: 75 DERAVEL-----------RFGKPKNDVFLPGL--------HMMFWPIDQVEI 107 ER EL R GK N + WPI + + Sbjct: 417 WERCRELIGEGHYYYDLVRTGKVYNRNYCMNPMTRTNFNVGAWTWPIHRNAL 468 >3oyv_A Imelysin; outer membrane protein, extracellular active site, metal BIN protein, structural genomics; HET: MSE; 1.25A {Bacteroides ovatus atcc 8483} PDB: 3n8u_A* Length = 361 Score = 27.4 bits (60), Expect = 5.6 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 8/76 (10%) Query: 81 LRFGKPKNDVFLPGLHMMFWPIDQVEIVKVIERQQKIGGRSASVGSNSGLILTGDQNIVG 140 FG P +M WP+DQ IV+++ + + + QN+ G Sbjct: 288 FLFGPVDEMGLDP--NMDSWPLDQNAIVQIL--NSQSWSDLEWSEGDDEAAVESAQNVRG 343 Query: 141 LH---FSVLYVVTDPR 153 H F +LY +PR Sbjct: 344 FHTLEF-LLYKNGEPR 358 >3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae} Length = 154 Score = 27.0 bits (60), Expect = 5.8 Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 8/103 (7%) Query: 195 ALEVRNLIQKTMDYYKSGILINTISIEDASPPREVADAFDEVQRAEQDEDRFVEESNK-- 252 AL R Q+ +L E P + E++ + V N+ Sbjct: 9 ALAQRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVRRINRTN 68 Query: 253 -----YSNRVLGSARGEASHIRESSIAYKDRIIQEAQGEADRF 290 L A + + Y D + + DR+ Sbjct: 69 SVTEFSEGMTLADALSVRDALLKKRTLYSD-LADQLTSRQDRY 110 >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421 Score = 26.9 bits (59), Expect = 7.4 Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 108 VKVIERQQKIGGRSASVGSNSGLILTGDQNIVGLHF 143 + V+E+ IGGR ++ + TG +++ Sbjct: 26 IIVLEKSAMIGGRFTNLPYKGFQLSTGALHMIPHGE 61 >3c0w_A Intron-encoded endonuclease I-SCEI; endonuclease, homing, ladlidadg, catalytic mechanism, metal binding; HET: DNA; 2.20A {Saccharomyces cerevisiae} PDB: 1r7m_A* 3c0x_A* Length = 235 Score = 26.8 bits (59), Expect = 8.9 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Query: 29 DVEAIIRYIKDKFDLIPFFKSYGSVYIILLLIGSFCAFQSI---YIVHPD 75 +VE +++ +++KF L + K + II + S+ F ++ Y+ P Sbjct: 171 EVEYLVKGLRNKFQLNCYVKINKNKPIIYIDSMSYLIFYNLIKPYL-IPQ 219 >3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus} Length = 454 Score = 26.7 bits (58), Expect = 9.6 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 22/57 (38%) Query: 75 DERAVEL-----------RFGKP---KNDVFLPGL--------HMMFWPIDQVEIVK 109 DER+ EL R GK K LP + + PI + + + Sbjct: 385 DERSKELVGEGHRFFDLLRNGKTIVRKGGYHLPSVDEEVDWDFYKCVLPIPEDQFIF 441 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 26.4 bits (57), Expect = 9.9 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 34/95 (35%) Query: 273 IAYKDRIIQEAQGEADRFLSIYGQYVNAPTLLRK-----RIYLETMEGILK--------K 319 IA DR+ QE P +RK R L+ ++ K K Sbjct: 74 IAQADRLTQE------------------PESIRKWREEQRKRLQELDAASKVMEQEWREK 115 Query: 320 AKKVIIDKKQSVMPYLPLNEAFSRIQTKREIRWYQ 354 AKK + + Q + N+ +RI K +YQ Sbjct: 116 AKKDLEEWNQRQSEQVEKNKINNRIADK---AFYQ 147 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.138 0.394 Gapped Lambda K H 0.267 0.0509 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,094,383 Number of extensions: 146604 Number of successful extensions: 452 Number of sequences better than 10.0: 1 Number of HSP's gapped: 447 Number of HSP's successfully gapped: 36 Length of query: 355 Length of database: 5,693,230 Length adjustment: 93 Effective length of query: 262 Effective length of database: 3,438,538 Effective search space: 900896956 Effective search space used: 900896956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 57 (26.3 bits)