HHsearch alignment for GI: 254780959 and conserved domain: COG0330

>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].
Probab=100.00  E-value=1.7e-38  Score=312.27  Aligned_cols=277  Identities=26%  Similarity=0.407  Sum_probs=239.9

Q ss_pred             HHHHHHHHHHHHHHHEEEECCCCEEEEEECCEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCC-CCCHHCCCCCC
Q ss_conf             99999999999983007957875799997585765522897189807632200379998752013443-31000011222
Q gi|254780959|r    9 FFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNL-DNIRVQVSDGK   87 (302)
Q Consensus         9 ~~v~i~~~~~~~~~~~~~V~~~e~~Vv~rfGk~~~~~~~pGlhfk~P~~~~~i~~v~~~~~r~~~~~~-~~~~v~T~D~~   87 (302)
T Consensus         6 ~~~~l~~~~~~~~~~~~iv~~~~~~vv~r~G~~~~~~~~pGl~f~~P~~~~~~~~~~~~~~~~~~~d~~~~~~viT~D~~   85 (291)
T COG0330           6 IIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNV   85 (291)
T ss_pred             HHHHHHHHHHHHHHEEEEECCCCEEEEEECCCEEEEECCCEEEEECCCCCHHEEEEEEEEEEEEEECCCCCCEEECCCCC
T ss_conf             25999999999963469984685599998264456505881799878752000122454203688416886137805797


Q ss_pred             CCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             10124332101201101222013313346643467778765310112420000012100158999999988742214431
Q gi|254780959|r   88 FYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISI  167 (302)
Q Consensus        88 ~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~i~~~v~~~l~~~~~~~GI~I  167 (302)
T Consensus        86 ~V~vd~~v~~rv~d~~~~~~~v~~----~~~~i~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V  161 (291)
T COG0330          86 IVSVDAVVQYRVTDPQKAVYNVEN----AEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKV  161 (291)
T ss_pred             EEEEEEEEEEEECCHHHHEEEECC----HHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf             699999999998773774367268----8999999999999999734318887506558899999999997612588189


Q ss_pred             CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             00000011110124455431128999998877678899997655778899999768989999888633878999999999
Q gi|254780959|r  168 EDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSN  247 (302)
Q Consensus       168 ~~V~I~~i~~p~~i~~ai~~~~~ae~~~~A~~~~a~~~~ea~~~~a~ae~~~~~i~AeA~~~a~~~~A~aeA~a~~~~~~  247 (302)
T Consensus       162 ~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~  240 (291)
T COG0330         162 VDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAA  240 (291)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf             998887558999999999999999999999999978788876544577899999999989877-9987510369999987


Q ss_pred             HHHHCH--HHHHHHHHHHHHHHHHCCCCCEEEECCCCH---HHHHCCC
Q ss_conf             987579--999999999999998346993999889971---6551221
Q gi|254780959|r  248 VFQKDP--EFFEFYRSMRAYTDSLASSDTFLVLSPDSD---FFKYFDR  290 (302)
Q Consensus       248 a~~~~p--~~~~~~~~l~~~~~~~~~~~~~~i~~~~s~---~~~~l~~  290 (302)
T Consensus       241 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~  288 (291)
T COG0330         241 ALREAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSAGGAILGLLEL  288 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             520114478999999999999875068971999669730445534432