HHsearch alignment for GI: 254780959 and conserved domain: COG0330
>COG0330 HflC Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=1.7e-38 Score=312.27 Aligned_cols=277 Identities=26% Similarity=0.407 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHEEEECCCCEEEEEECCEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCC-CCCHHCCCCCC
Q ss_conf 99999999999983007957875799997585765522897189807632200379998752013443-31000011222
Q gi|254780959|r 9 FFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNL-DNIRVQVSDGK 87 (302)
Q Consensus 9 ~~v~i~~~~~~~~~~~~~V~~~e~~Vv~rfGk~~~~~~~pGlhfk~P~~~~~i~~v~~~~~r~~~~~~-~~~~v~T~D~~ 87 (302)
T Consensus 6 ~~~~l~~~~~~~~~~~~iv~~~~~~vv~r~G~~~~~~~~pGl~f~~P~~~~~~~~~~~~~~~~~~~d~~~~~~viT~D~~ 85 (291)
T COG0330 6 IIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVRVDLRERTLDVGPPQEVITKDNV 85 (291)
T ss_pred HHHHHHHHHHHHHHEEEEECCCCEEEEEECCCEEEEECCCEEEEECCCCCHHEEEEEEEEEEEEEECCCCCCEEECCCCC
T ss_conf 25999999999963469984685599998264456505881799878752000122454203688416886137805797
Q ss_pred CCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 10124332101201101222013313346643467778765310112420000012100158999999988742214431
Q gi|254780959|r 88 FYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISI 167 (302)
Q Consensus 88 ~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~i~~~v~~~l~~~~~~~GI~I 167 (302)
T Consensus 86 ~V~vd~~v~~rv~d~~~~~~~v~~----~~~~i~~~~~~~lR~vig~~~~~e~~~~~~~~i~~~i~~~l~~~~~~~Gi~V 161 (291)
T COG0330 86 IVSVDAVVQYRVTDPQKAVYNVEN----AEAALRQLVQSALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKV 161 (291)
T ss_pred EEEEEEEEEEEECCHHHHEEEECC----HHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 699999999998773774367268----8999999999999999734318887506558899999999997612588189
Q ss_pred CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00000011110124455431128999998877678899997655778899999768989999888633878999999999
Q gi|254780959|r 168 EDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSN 247 (302)
Q Consensus 168 ~~V~I~~i~~p~~i~~ai~~~~~ae~~~~A~~~~a~~~~ea~~~~a~ae~~~~~i~AeA~~~a~~~~A~aeA~a~~~~~~ 247 (302)
T Consensus 162 ~~V~i~~i~~p~ev~~a~~~~~~Aer~~ra~i~~Ae~~~~~~~~~a~g~~~a~~i~aea~~~a-~~~~~a~~~~~~~~~~ 240 (291)
T COG0330 162 VDVEIKDIDPPEEVQAAMEKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEA-EVIARAEADAAKIIAA 240 (291)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_conf 998887558999999999999999999999999978788876544577899999999989877-9987510369999987
Q ss_pred HHHHCH--HHHHHHHHHHHHHHHHCCCCCEEEECCCCH---HHHHCCC
Q ss_conf 987579--999999999999998346993999889971---6551221
Q gi|254780959|r 248 VFQKDP--EFFEFYRSMRAYTDSLASSDTFLVLSPDSD---FFKYFDR 290 (302)
Q Consensus 248 a~~~~p--~~~~~~~~l~~~~~~~~~~~~~~i~~~~s~---~~~~l~~ 290 (302)
T Consensus 241 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~ 288 (291)
T COG0330 241 ALREAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSAGGAILGLLEL 288 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf 520114478999999999999875068971999669730445534432