HHsearch alignment for GI: 254780959 and conserved domain: COG1580

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion].
Probab=94.45  E-value=0.18  Score=30.50  Aligned_cols=81  Identities=12%  Similarity=0.137  Sum_probs=57.9

Q ss_pred             CCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             221012433210120110122201331334664346777876531011242000001-2100158999999988742214
Q gi|254780959|r   86 GKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALS-KQREKMMMEVCEDLRYDAEKLG  164 (302)
Q Consensus        86 ~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~-~~R~~i~~~v~~~l~~~~~~~G  164 (302)
T Consensus        76 ~~~~~v~i~i~l~~~n~~~-~~e-------l~~-~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~  146 (159)
T COG1580          76 PKDRYVKIAITLEVANKAL-LEE-------LEE-KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ  146 (159)
T ss_pred             CCCEEEEEEEEEEECCHHH-HHH-------HHH-HHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             8747999999886088889-999-------997-5689999999999717898836822189999999999989984587


Q ss_pred             CCCCCCEEHHHH
Q ss_conf             431000000111
Q gi|254780959|r  165 ISIEDVRVLRTD  176 (302)
Q Consensus       165 I~I~~V~I~~i~  176 (302)
T Consensus       147 -~V~dV~fT~fi  157 (159)
T COG1580         147 -VVKDVLFTNFI  157 (159)
T ss_pred             -EEEEEEEEHHH
T ss_conf             -26778555131