HHsearch alignment for GI: 254780959 and conserved domain: COG1580
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion].
Probab=94.45 E-value=0.18 Score=30.50 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 221012433210120110122201331334664346777876531011242000001-2100158999999988742214
Q gi|254780959|r 86 GKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALS-KQREKMMMEVCEDLRYDAEKLG 164 (302)
Q Consensus 86 ~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~-~~R~~i~~~v~~~l~~~~~~~G 164 (302)
T Consensus 76 ~~~~~v~i~i~l~~~n~~~-~~e-------l~~-~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~~~in~~L~~g~ 146 (159)
T COG1580 76 PKDRYVKIAITLEVANKAL-LEE-------LEE-KKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIKDRINTILKEGQ 146 (159)
T ss_pred CCCEEEEEEEEEEECCHHH-HHH-------HHH-HHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 8747999999886088889-999-------997-5689999999999717898836822189999999999989984587
Q ss_pred CCCCCCEEHHHH
Q ss_conf 431000000111
Q gi|254780959|r 165 ISIEDVRVLRTD 176 (302)
Q Consensus 165 I~I~~V~I~~i~ 176 (302)
T Consensus 147 -~V~dV~fT~fi 157 (159)
T COG1580 147 -VVKDVLFTNFI 157 (159)
T ss_pred -EEEEEEEEHHH
T ss_conf -26778555131