HHsearch alignment for GI: 254780959 and conserved domain: COG4260
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism].
Probab=98.46 E-value=4.2e-06 Score=65.78 Aligned_cols=168 Identities=16% Similarity=0.233 Sum_probs=118.9
Q ss_pred HHEEEECCCCEEEEEECCEEEEEECCCCEE----EEECC-----------CCCCEEEEEEEEEEECC-CC-CCCCHHCCC
Q ss_conf 300795787579999758576552289718----98076-----------32200379998752013-44-331000011
Q gi|254780959|r 22 SSFFIVDARQQAIVTRFGKIHATYREPGIY----FKMPF-----------SFMNVDRVKYLQKQIMR-LN-LDNIRVQVS 84 (302)
Q Consensus 22 ~~~~~V~~~e~~Vv~rfGk~~~~~~~pGlh----fk~P~-----------~~~~i~~v~~~~~r~~~-~~-~~~~~v~T~ 84 (302)
T Consensus 39 Gs~l~Vrp~qmamfvn~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin~~ 118 (345)
T COG4260 39 GSILHVRPNQMAMFVNGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPINYF 118 (345)
T ss_pred CCEEEEECCCEEEEECCCEEEEEECCCCEEEEEECCCCHHHHHHCCEECCCCCCCCEEEEEECCEECCEECCCCCCEECC
T ss_conf 86799845834899719888765437861686524562532211230057886530599986120203633798770325
Q ss_pred C---C--CCCCCCCCCCEEEECCCHHHHHCCCCHH-----HHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHH
Q ss_conf 2---2--2101243321012011012220133133-----466434677787653101124200-000121001589999
Q gi|254780959|r 85 D---G--KFYEVDAMMTYRIIDPSLFCQSVSCDRI-----AAESRLRTRLDASIRRVYGLRRFD-DALSKQREKMMMEVC 153 (302)
Q Consensus 85 D---~--~~v~vd~~v~yrI~dp~~~~~~~~~~~~-----~~~~~l~~~~~~~lr~v~~~~~~~-e~l~~~R~~i~~~v~ 153 (302)
T Consensus 119 dn~~~g~l~lRa~Gtys~kvtDpi~fi~~I~g~~dvy~v~di~~q~ls~~m~al~tai~q~G~~~~~ltan~~elsk~m~ 198 (345)
T COG4260 119 DNFYNGELFLRAHGTYSIKVTDPILFIQQIPGNRDVYTVDDINQQYLSEFMGALATAINQSGVRFSFLTANQMELSKYMA 198 (345)
T ss_pred CCCCCCEEEEEECCEEEEEECCHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHH
T ss_conf 56666502776152478984278999986568875577899889899999999999987619443111000778999999
Q ss_pred HHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHH
Q ss_conf 999887422144310000001111012445543112
Q gi|254780959|r 154 EDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRM 189 (302)
Q Consensus 154 ~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~~ 189 (302)
T Consensus 199 e~Ld~q~~q~Gm~v~sfqvaSisypde~Q~lin~r~ 234 (345)
T COG4260 199 EVLDEQWTQYGMAVDSFQVASISYPDESQALINMRN 234 (345)
T ss_pred HHHHHHHHHHCCEEEEEEEEEECCCHHHHHHHHHHC
T ss_conf 987389986171676678987538689999987650