HHsearch alignment for GI: 254780959 and conserved domain: PRK11029
>PRK11029 FtsH protease regulator HflC; Provisional.
Probab=100.00 E-value=0 Score=482.43 Aligned_cols=283 Identities=34% Similarity=0.575 Sum_probs=260.5
Q ss_pred HHHHHHHHHHHHHHHEEEECCCCEEEEEECCEEEEE------ECCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCHHC
Q ss_conf 999999999999830079578757999975857655------22897189807632200379998752013443310000
Q gi|254780959|r 9 FFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHAT------YREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQ 82 (302)
Q Consensus 9 ~~v~i~~~~~~~~~~~~~V~~~e~~Vv~rfGk~~~~------~~~pGlhfk~P~~~~~i~~v~~~~~r~~~~~~~~~~v~ 82 (302)
T Consensus 5 ilviii~vlv~l~~s~yiV~e~e~aVVlrFGk~vr~~~~~~~v~ePGLhfkiPf----I~~V~~~d~Ri~~~d~~~~~vl 80 (334)
T PRK11029 5 VIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPF----IETVKMLDARIQTMDNQADRFV 80 (334)
T ss_pred HHHHHHHHHHHHHHEEEEECCCEEEEEEECCCEECCCCCCCCCCCCCEEEECCC----CCEEEECCCEEEEEECCCCEEE
T ss_conf 999999999999856899757708999966955236677764358980587375----4188981227997607972688
Q ss_pred CCCCCCCCCCCCCCEEEECCCHHHHHCCC-CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH---
Q ss_conf 11222101243321012011012220133-13346643467778765310112420000012100158999999988---
Q gi|254780959|r 83 VSDGKFYEVDAMMTYRIIDPSLFCQSVSC-DRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRY--- 158 (302)
Q Consensus 83 T~D~~~v~vd~~v~yrI~dp~~~~~~~~~-~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~i~~~v~~~l~~--- 158 (302)
T Consensus 81 T~D~k~i~VD~~v~wrI~Dp~~fy~~~~~~~~~~a~~~l~~~~~s~lR~~ig~~~l~eiis~~R~~l~~~v~~~l~~~~~ 160 (334)
T PRK11029 81 TKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLDVRDALNSGSA 160 (334)
T ss_pred ECCCCEEEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 51784899855899997378998988544317789999999989999999732769888301088999999999743013
Q ss_pred ------------------------------------HHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------------------------------74221443100000011110124455431128999998877678
Q gi|254780959|r 159 ------------------------------------DAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRA 202 (302)
Q Consensus 159 ------------------------------------~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~~~ae~~~~A~~~~a 202 (302)
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~s~~~~GIeVvdV~ikrid~P~~v~~av~~rM~aER~~~A~~~ra 240 (334)
T PRK11029 161 GTEDEVATPAADDAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRS 240 (334)
T ss_pred CCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 32001011110023445566677775432211011101125838999998744898899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
Q ss_conf 89999765577889999976898999988863387899999999998757999999999999999834699399988997
Q gi|254780959|r 203 RGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLASSDTFLVLSPDS 282 (302)
Q Consensus 203 ~~~~ea~~~~a~ae~~~~~i~AeA~~~a~~~~A~aeA~a~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~i~~~~s 282 (302)
T Consensus 241 eG~~~a~~Ira~ad~e~~~i~AeA~r~a~~irgegdAea~~iya~Ay~kdpefy~f~rsLeay~~~l~~~~~~lVl~~ds 320 (334)
T PRK11029 241 QGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSQDPDFYAFIRSLRAYENSFSGNQDVMVLSPDS 320 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 78999999898888888999888998999998378899999999997339899999999999999956999589989881
Q ss_pred HHHHHCCCHHHCC
Q ss_conf 1655122101001
Q gi|254780959|r 283 DFFKYFDRFQERQ 295 (302)
Q Consensus 283 ~~~~~l~~~~~~~ 295 (302)
T Consensus 321 ~f~~y~~~~~~~~ 333 (334)
T PRK11029 321 DFFRYMKTPTSAT 333 (334)
T ss_pred HHHHHHCCCCCCC
T ss_conf 7998505987678