HHsearch alignment for GI: 254780959 and conserved domain: cd03400
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.51 E-value=9.6e-15 Score=131.48 Aligned_cols=121 Identities=16% Similarity=0.250 Sum_probs=106.8
Q ss_pred EEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEE--CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 98752013443310000112221012433210120--1101222013313346643467778765310112420000012
Q gi|254780959|r 66 YLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRII--DPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSK 143 (302)
Q Consensus 66 ~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~--dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~ 143 (302)
T Consensus 2 ~y~~R~q~~~-~~~~vlskdgl~v~~dvtV~Y~v~~~~~~~l~~~~G~--~y~~~iI~p~vrs~~R~v~~~y~a~elys~ 78 (124)
T cd03400 2 EYSTRLQEVD-EKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGT--DYARKIVRPTFRSLVREVTGRYTAEQIYST 78 (124)
T ss_pred CCCCEEEEEC-EEEEEECCCCCEEEEEEEEEEEECHHHHHHHHHHHCC--CHHHEEECHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 8762576601-1488787899789999999999988889999998497--777735217899999999733789999885
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHH
Q ss_conf 1001589999999887422144310000001111012445543112
Q gi|254780959|r 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRM 189 (302)
Q Consensus 144 ~R~~i~~~v~~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~~ 189 (302)
T Consensus 79 kR~~i~~~I~~~l~~~l~~~gi~ve~VlIr~I~lP~~~~~AIE~Kl 124 (124)
T cd03400 79 KRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQIADAIEAKL 124 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCHHHHHHHHHCC
T ss_conf 7999999999999998863895999999997528989999998419