>cd03406 Band_7_3 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H

Probab=99.82 E-value=2.1e-18 Score=159.41 Aligned_cols=165 Identities=15% Similarity=0.315 Sum_probs=137.8 Q ss_pred HHHEEEECCCCEEEEEECCEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEE Q ss_conf 83007957875799997585765522897189807632200379998752013443310000112221012433210120 Q gi|254780959|r 21 FSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRII 100 (302) Q Consensus 21 ~~~~~~V~~~e~~Vv~rfGk~~~~~~~pGlhfk~P~~~~~i~~v~~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~ 100 (302) T Consensus 2 ~~~~H~v~EGhvgvYyRgGaLl~~~s~PG~H~~iPf----iT~~~~vQ~TlQTD~v~nVpCGTsgGvmi~Fd~I---eVv 74 (280) T cd03406 2 SSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPF----ITTYKSVQVTLQTDEVKNVPCGTSGGVMIYFDRI---EVV 74 (280) T ss_pred CHHHCCCCCCCEEEEECCCEEECCCCCCCEEEEEEE----EEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEEE---EEE T ss_conf 502101577726999737420046799971799876----5456788987301100456777778737987436---765 Q ss_pred C---C---CHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCCEE Q ss_conf 1---1---0122201331334664346777876531011242000001210015899999998874221--443100000 Q gi|254780959|r 101 D---P---SLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKL--GISIEDVRV 172 (302) Q Consensus 101 d---p---~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~i~~~v~~~l~~~~~~~--GI~I~~V~I 172 (302) T Consensus 75 N~L~~~~Vydiv~n~t~d--YDk~lI~dkihheinqfCS~htlqEVyid~FDqIDE~Lk~aLQ~dl~~~apGl~I~aVRv 152 (280) T cd03406 75 NFLIPDSVYDIVKNYTAD--YDKTLIFNKIHHELNQFCSVHTLQEVYIDLFDQIDENLKLALQKDLTRMAPGLEIQAVRV 152 (280) T ss_pred ECCCHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 023588999999852666--542013446788998886202188998877776648999999876540277736999997 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 01111012445543112899999 Q gi|254780959|r 173 LRTDLTQEVSQQTYDRMKAERLA 195 (302) Q Consensus 173 ~~i~~p~~i~~ai~~~~~ae~~~ 195 (302) T Consensus 153 tKPkiPe~Ir~Ny-E~me~EKTk 174 (280) T cd03406 153 TKPKIPEAIRRNY-ELMEAEKTK 174 (280) T ss_pred ECCCCHHHHHHHH-HHHHHHHHH T ss_conf 5899819999999-999867888

HHsearch alignment for GI: 254780959 and conserved domain: cd03406