HHsearch alignment for GI: 254780959 and conserved domain: cd03407
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=100.00 E-value=6e-40 Score=323.27 Aligned_cols=246 Identities=19% Similarity=0.248 Sum_probs=222.1
Q ss_pred CCCEEEEEECCEEEEEECCCCEEEEECCCCCCEEEEE-EEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEE--CCCHH
Q ss_conf 8757999975857655228971898076322003799-98752013443310000112221012433210120--11012
Q gi|254780959|r 29 ARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVK-YLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRII--DPSLF 105 (302)
Q Consensus 29 ~~e~~Vv~rfGk~~~~~~~pGlhfk~P~~~~~i~~v~-~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~--dp~~~ 105 (302)
T Consensus 1 Q~e~~VV~RfGky~~~~-~PGLhf~iP~----id~v~~~~~~r~~~~~~~-~~~~TkDn~~V~vd~~v~yrI~~~~~~~a 74 (262)
T cd03407 1 QSQVAIIERFGKFFKVA-WPGCHFVIPL----VETVAGRLSLRVQQLDVR-VETKTKDNVFVTVVGQIQYRVSEENATDA 74 (262)
T ss_pred CCEEEEEEECCCCCCCC-CCCEEEECCC----EEEEEEEEEEEEEECCCC-CEEECCCCCEEEEEEEEEEEEECCCHHHH
T ss_conf 96679988778707745-9970898176----799999972079962678-45650578689999999999904858889
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHH
Q ss_conf 22013313346643467778765310112420000012100158999999988742214431000000111101244554
Q gi|254780959|r 106 CQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQT 185 (302)
Q Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~i~~~v~~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai 185 (302)
T Consensus 75 ~y~v~~~----~~~i~~~~~s~lR~vIG~~~Ld~vl~-~R~~I~~~v~~~l~~~~~~~GI~V~~V~I~di~pP~~V~~Am 149 (262)
T cd03407 75 FYKLGNP----EEQIQSYVFDVLRARIPKLTLDELFE-QKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAM 149 (262)
T ss_pred HHHHCCH----HHHHHHHHHHHHHHHHCCCCHHHHHH-CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCHHHHHHH
T ss_conf 9860589----99999999999998966673788874-618799999999999998608736999985259999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCHHHHHHH---H
Q ss_conf 31128999998877678899997655778899999768989999888633878999999999987--579999999---9
Q gi|254780959|r 186 YDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQ--KDPEFFEFY---R 260 (302)
Q Consensus 186 ~~~~~ae~~~~A~~~~a~~~~ea~~~~a~ae~~~~~i~AeA~~~a~~~~A~aeA~a~~~~~~a~~--~~p~~~~~~---~ 260 (302)
T Consensus 150 ~~~~~Aer~r~a~i~~Ae~~~~~~i~~Aeg~ae~~~l~aeg~a~~~~~~A~g~~~~~~~~~~a~~~~~~~~~~~~~l~~~ 229 (262)
T cd03407 150 NEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAVPGMTAKDVMDLLLVNQ 229 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999999998999997798868999999999999999999987878999999999875227087999999999
Q ss_pred HHHHHHHHHCCCCCEEEECCCCHHH
Q ss_conf 9999999834699399988997165
Q gi|254780959|r 261 SMRAYTDSLASSDTFLVLSPDSDFF 285 (302)
Q Consensus 261 ~l~~~~~~~~~~~~~~i~~~~s~~~ 285 (302)
T Consensus 230 Y~e~l~~~~~~~~~~v~~p~~~~~~ 254 (262)
T cd03407 230 YFDTLKAYGRSSSTVVFRPHGPGGA 254 (262)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf 9999999970899789956999878