HHsearch alignment for GI: 254780959 and conserved domain: cd03407
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.34 E-value=0.00055 Score=49.62 Aligned_cols=93 Identities=17% Similarity=0.268 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98877678899997655778899999768989999888633878999999999987579999999999999998346993
Q gi|254780959|r 195 AEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLASSDT 274 (302)
Q Consensus 195 ~~A~~~~a~~~~ea~~~~a~ae~~~~~i~AeA~~~a~~~~A~aeA~a~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 274 (302)
T Consensus 148 Am~~~~~Aer~r~a~i~~Ae~~~~~~i~~Aeg~ae~~~l~aeg~a~~~~~~A~g~~~~---------~~~~~~a~~~~~- 217 (262)
T cd03407 148 AMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRES---------ILSLADAVPGMT- 217 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCC-
T ss_conf 9999999999999999998999997798868999999999999999999987878999---------999999875227-
Q ss_pred EEEECCCC-HHH---HHCCCHHHCCCCCCCC
Q ss_conf 99988997-165---5122101001211146
Q gi|254780959|r 275 FLVLSPDS-DFF---KYFDRFQERQKNYRKE 301 (302)
Q Consensus 275 ~~i~~~~s-~~~---~~l~~~~~~~~~~~~~ 301 (302)
T Consensus 218 ----~~~~~~~~l~~~Y~e~l~~~~~~~~~~ 244 (262)
T cd03407 218 ----AKDVMDLLLVNQYFDTLKAYGRSSSTV 244 (262)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf ----087999999999999999997089978