HHsearch alignment for GI: 254780959 and conserved domain: cd03407

>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=97.34  E-value=0.00055  Score=49.62  Aligned_cols=93  Identities=17%  Similarity=0.268  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             98877678899997655778899999768989999888633878999999999987579999999999999998346993
Q gi|254780959|r  195 AEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLASSDT  274 (302)
Q Consensus       195 ~~A~~~~a~~~~ea~~~~a~ae~~~~~i~AeA~~~a~~~~A~aeA~a~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~  274 (302)
T Consensus       148 Am~~~~~Aer~r~a~i~~Ae~~~~~~i~~Aeg~ae~~~l~aeg~a~~~~~~A~g~~~~---------~~~~~~a~~~~~-  217 (262)
T cd03407         148 AMNEINAAQRQRVAAVHKAEAEKIKDIKAAEADAEAKRLQGVGAAEQRQAIADGLRES---------ILSLADAVPGMT-  217 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHCC-
T ss_conf             9999999999999999998999997798868999999999999999999987878999---------999999875227-


Q ss_pred             EEEECCCC-HHH---HHCCCHHHCCCCCCCC
Q ss_conf             99988997-165---5122101001211146
Q gi|254780959|r  275 FLVLSPDS-DFF---KYFDRFQERQKNYRKE  301 (302)
Q Consensus       275 ~~i~~~~s-~~~---~~l~~~~~~~~~~~~~  301 (302)
T Consensus       218 ----~~~~~~~~l~~~Y~e~l~~~~~~~~~~  244 (262)
T cd03407         218 ----AKDVMDLLLVNQYFDTLKAYGRSSSTV  244 (262)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             ----087999999999999999997089978