HHsearch alignment for GI: 254780959 and conserved domain: cd03408
>cd03408 Band_7_5 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=99.21 E-value=2.6e-10 Score=97.79 Aligned_cols=168 Identities=20% Similarity=0.272 Sum_probs=117.0
Q ss_pred HHHHEEEECCCCEEEEEECCEEEEEECCCCEEEEE----CCC---------CCC--EEEEEEEEEEE---CCCCCC-CCH
Q ss_conf 98300795787579999758576552289718980----763---------220--03799987520---134433-100
Q gi|254780959|r 20 SFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKM----PFS---------FMN--VDRVKYLQKQI---MRLNLD-NIR 80 (302)
Q Consensus 20 ~~~~~~~V~~~e~~Vv~rfGk~~~~~~~pGlhfk~----P~~---------~~~--i~~v~~~~~r~---~~~~~~-~~~ 80 (302)
T Consensus 12 ~~Gs~LiV~e~Q~avf~~~Gki~dv~-~pg~~~l~t~n~P~l~~l~~~~~g~~spf~~evyfvn~~~~~~~kwGt~~pi~ 90 (207)
T cd03408 12 KNGSQLIVREGQAAVFVNEGKVADVF-APGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEVYFFNTRVFTDLLWGTPAPVF 90 (207)
T ss_pred CCCCEEEECCCCEEEEEECCEEEEEE-CCCCCEEECCCCCHHHHHCCCCCCCCCCEECCCCCEEEEEEEEECCCCCCCCC
T ss_conf 55989998799689999899998997-79972463599730522226464567764235354677899850456779866
Q ss_pred HC--CCCCCCCCCCCCCCEEEECCCHHHHHCCCCH-----HHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHH
Q ss_conf 00--1122210124332101201101222013313-----3466434677787653101124200000-12100158999
Q gi|254780959|r 81 VQ--VSDGKFYEVDAMMTYRIIDPSLFCQSVSCDR-----IAAESRLRTRLDASIRRVYGLRRFDDAL-SKQREKMMMEV 152 (302)
Q Consensus 81 v~--T~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~-----~~~~~~l~~~~~~~lr~v~~~~~~~e~l-~~~R~~i~~~v 152 (302)
T Consensus 91 ~~d~~~~~v~lra~G~ys~kI~Dp~~F~~~ivg~~~~~~~~~i~~~l~~~i~~~l~~~l~~~~~~~~~~~~~~~els~~i 170 (207)
T cd03408 91 GRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTVEDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAV 170 (207)
T ss_pred CCCCCCCEEEEEEEEEEEEEECCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 66887551779999999999848999999836886536179999999999999999999862852526789999999999
Q ss_pred HHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHH
Q ss_conf 999988742214431000000111101244554311
Q gi|254780959|r 153 CEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDR 188 (302)
Q Consensus 153 ~~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~ 188 (302)
T Consensus 171 ~~~l~~~~~~~Glel~~f~I~sI~~pee~~~~i~kr 206 (207)
T cd03408 171 REALAPWFASFGLELVSVYIESISYPDEVQKLIDKR 206 (207)
T ss_pred HHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHCC
T ss_conf 999999999659188888897557998999987444