Query gi|254780959|ref|YP_003065372.1| putative hydrolase serine protease transmembrane protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 302
No_of_seqs 189 out of 3146
Neff 8.3
Searched_HMMs 33803
Date Wed Jun 1 21:31:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780959.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1win_A Flotillin 2; BAND 7 do 99.6 9E-18 2.7E-22 154.0 -0.7 133 61-194 4-141 (143)
2 >2rpb_A Hypothetical membrane 99.6 7.2E-16 2.1E-20 139.6 2.8 112 64-180 2-113 (113)
3 >3bk6_A PH stomatin; archaea, 99.5 8.9E-15 2.6E-19 131.3 2.6 112 61-177 3-114 (114)
4 >2kk7_A V-type ATP synthase su 64.5 8.3 0.00025 17.3 5.3 29 203-231 18-46 (52)
5 >1l2p_A ATP synthase B chain; 63.2 8.8 0.00026 17.2 6.6 20 195-214 9-28 (61)
6 >2zuo_A MVP, major vault prote 58.5 2.7 8.1E-05 21.0 0.3 95 78-177 7-126 (128)
7 >3bz1_L Photosystem II reactio 47.3 12 0.00035 16.2 2.1 23 3-25 13-35 (37)
8 >2acm_B Mucin-1; auto-catalyti 38.3 20 0.00061 14.4 2.4 31 151-181 23-53 (55)
9 >2hiq_A Hypothetical protein Y 22.3 37 0.0011 12.4 1.3 10 45-54 38-47 (95)
10 >3he8_A Ribose-5-phosphate iso 19.2 42 0.0013 12.0 1.8 34 147-180 9-45 (128)
No 1
>>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, cell adhesion; NMR {Mus musculus} (A:)
Probab=99.65 E-value=9e-18 Score=154.05 Aligned_cols=133 Identities=13% Similarity=0.124 Sum_probs=121.1
Q ss_pred EEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCHHHHHCC-----CCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 03799987520134433100001122210124332101201101222013-----3133466434677787653101124
Q gi|254780959|r 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVS-----CDRIAAESRLRTRLDASIRRVYGLR 135 (302)
Q Consensus 61 i~~v~~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~dp~~~~~~~~-----~~~~~~~~~l~~~~~~~lr~v~~~~ 135 (302)
++++..+|+|.++++.++.+++|+|+.++.+++++.|||.||..++..+. .....++.+|.+.+.+++|+++|++
T Consensus 4 ~~~v~~~~~r~~~~~~~~~~v~T~D~~~i~v~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lr~~~~~~ 83 (143)
T 1win_A 4 GSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTL 83 (143)
T ss_dssp CCCCCSCCCSCEEECCCEEEEECSSSCEEEECCEEEEEECCCSSCCHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87415865167874488716787899889999999999848089998877643246588999999999999999986216
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20000012100158999999988742214431000000111101244554311289999
Q gi|254780959|r 136 RFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERL 194 (302)
Q Consensus 136 ~~~e~l~~~R~~i~~~v~~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~~~ae~~ 194 (302)
+++++++ +|+++++.+++.|++.+.+|||+|.+|.|++++||+++.+++.+++.|+++
T Consensus 84 ~~~~~~~-~r~~i~~~v~~~l~~~l~~~Gi~i~~v~i~~i~~p~e~~~ai~~~~~Ae~~ 141 (143)
T 1win_A 84 TVEQIYQ-DRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTSGPS 141 (143)
T ss_dssp CHHHHHH-THHHHHHHHHHHHHHHHTTTTEEEEEEECCCEECTTCHHHHHCCCCCCCCC
T ss_pred CHHHHHH-CHHHHHHHHHHHHHHHHHHHCEEEEEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 6677760-899999999999999996500588899999638849999999999986443
No 2
>>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii} (A:)
Probab=99.57 E-value=7.2e-16 Score=139.59 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=104.5
Q ss_pred EEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99987520134433100001122210124332101201101222013313346643467778765310112420000012
Q gi|254780959|r 64 VKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSK 143 (302)
Q Consensus 64 v~~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~ 143 (302)
|..+|+|.++++.++++++|+|++.+.++++++|||.||.++++++.+ ++..|.+.+++++|+++|+|+++++++
T Consensus 2 v~~vd~r~~~~~~~~~~v~T~D~~~v~v~~~v~yrI~d~~~~~~~~~~----~~~~l~~~~~~alr~~~~~~~~~el~~- 76 (113)
T 2rpb_A 2 SDHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVSD----FLMAIVKLAQTNLRAIIGEMELDETLS- 76 (113)
T ss_dssp CSCCCCCCEEEECCCEEEECTTSCEEEECEEEEEEESCTTTCTTTTTH----HHHHHHHHHHHHHHHHHTSCCTTHHHH-
T ss_pred CCCEEEEEEEECCCCCEEECCCCCEEEEEEEEEEEECCHHHHHEECCC----HHHHHHHHHHHHHHHHHHHCCHHHHHH-
T ss_conf 961752688225898576838999999989999998876887212799----999999999999999986553999982-
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHH
Q ss_conf 1001589999999887422144310000001111012
Q gi|254780959|r 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180 (302)
Q Consensus 144 ~R~~i~~~v~~~l~~~~~~~GI~I~~V~I~~i~~p~~ 180 (302)
+|+++++++++.+++.+++|||+|.+|+|++++||++
T Consensus 77 ~R~~i~~~i~~~l~~~l~~~Gi~i~~v~I~~i~~p~e 113 (113)
T 2rpb_A 77 GRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113 (113)
T ss_dssp CHHHHHHHHHHHHHHHHGGGTEECCCEEECCCBCCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCC
T ss_conf 5999999999989877602698999999985219589
No 3
>>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii} (A:1-114)
Probab=99.49 E-value=8.9e-15 Score=131.27 Aligned_cols=112 Identities=19% Similarity=0.290 Sum_probs=105.1
Q ss_pred EEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 03799987520134433100001122210124332101201101222013313346643467778765310112420000
Q gi|254780959|r 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDA 140 (302)
Q Consensus 61 i~~v~~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~ 140 (302)
++++..+|+|.+.++.++.++.|+|++++.+++.++|||.||.+++.++.+ ++..|.+.+.+++|+++|+++++++
T Consensus 3 i~~v~~i~~r~~~~~~~~~~v~T~D~~~v~v~~~v~~ri~d~~~~~~~~~~----~~~~l~~~~~~~lr~~~~~~~~~ei 78 (114)
T 3bk6_A 3 FEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKN----YIMATSQISQTTLRSVIGQAHLDEL 78 (114)
T ss_dssp EEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSC----HHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred EEEEEEEEEEEEEEECCCCEEECCCCCEEEEEEEEEEEEEECHHHHHCCCC----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 786289972578760798646738998899989999999563546650277----8889999999998887763018988
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHH
Q ss_conf 0121001589999999887422144310000001111
Q gi|254780959|r 141 LSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDL 177 (302)
Q Consensus 141 l~~~R~~i~~~v~~~l~~~~~~~GI~I~~V~I~~i~~ 177 (302)
++ +|+++++.+++.+++.+.+|||+|.+|.|+++++
T Consensus 79 ~~-~R~~i~~~i~~~l~~~l~~~Gi~i~~v~i~~i~L 114 (114)
T 3bk6_A 79 LS-ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVEL 114 (114)
T ss_dssp HH-CHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEE
T ss_pred HC-CHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 60-0788878899999887873485899987325699
No 4
>>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii} (A:)
Probab=64.49 E-value=8.3 Score=17.34 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999765577889999976898999988
Q gi|254780959|r 203 RGREEGQKRMSIADRKATQILSEARRDSE 231 (302)
Q Consensus 203 ~~~~ea~~~~a~ae~~~~~i~AeA~~~a~ 231 (302)
.+..++.+|.++|+.++..++-.|.-+|+
T Consensus 18 DA~~~A~kI~sEAekEk~~il~KAkeEAE 46 (52)
T 2kk7_A 18 DAKAEANKIISEAEAEKAKILEKAKEEAE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88868999998999889999999899999
No 5
>>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} (A:)
Probab=63.19 E-value=8.8 Score=17.17 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 98877678899997655778
Q gi|254780959|r 195 AEAEFIRARGREEGQKRMSI 214 (302)
Q Consensus 195 ~~A~~~~a~~~~ea~~~~a~ 214 (302)
.+|..++.++...+..|..+
T Consensus 9 ~eAa~Ii~~A~kra~qIvee 28 (61)
T 1l2p_A 9 AEAQVIIEQANKRRSQILDE 28 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999889999999
No 6
>>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A (A:520-647)
Probab=58.54 E-value=2.7 Score=21.01 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=57.3
Q ss_pred CCHHCCCCCCCCCCCCCCCEEE--E---CCCH--HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-HH
Q ss_conf 1000011222101243321012--0---1101--2220133133466434677787653101124200000121001-58
Q gi|254780959|r 78 NIRVQVSDGKFYEVDAMMTYRI--I---DPSL--FCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQREK-MM 149 (302)
Q Consensus 78 ~~~v~T~D~~~v~vd~~v~yrI--~---dp~~--~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~l~~~R~~-i~ 149 (302)
...+.|+|...+.+...-+|.- . ||.. -.+++.+.-.. +-..+.|-+|..+++.+.+++.. +-.. |.
T Consensus 7 ~i~vET~DhArL~l~LsYnW~F~v~d~~d~~~~~k~FsVpDFvGd----aCk~iaSRIR~aVA~~~Fd~FHk-nSa~iIR 81 (128)
T 2zuo_A 7 VITIETADHARLQLQLAYNWHFELKNRNDPAEAAKLFSVPDFVGD----ACKAIASRVRGAVASVTFDDFHK-NSARIIR 81 (128)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECCTTTTCHHHHHGGGSSSSHHHH----HHHHHHHHHHHHHTTSCHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 899987788998877877766666500125567887500167899----98878988999986653999988-7999999
Q ss_pred HHHHH-----H----------HHH--HHHHCCCCCCCCEEHHHHH
Q ss_conf 99999-----9----------988--7422144310000001111
Q gi|254780959|r 150 MEVCE-----D----------LRY--DAEKLGISIEDVRVLRTDL 177 (302)
Q Consensus 150 ~~v~~-----~----------l~~--~~~~~GI~I~~V~I~~i~~ 177 (302)
+.|.. . .+. .+...|+.|++|.|+.+.|
T Consensus 82 ~aVFG~d~~~~~~~~~~~~~~~r~~~~F~~N~lvIt~VDvqsvEp 126 (128)
T 2zuo_A 82 MAVFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEP 126 (128)
T ss_dssp HHSSCCC-------------CCCSCEECTTTCEEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998877665556766667777766679999887999999887689
No 7
>>3bz1_L Photosystem II reaction center protein L; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz2_L* (L:)
Probab=47.28 E-value=12 Score=16.18 Aligned_cols=23 Identities=39% Similarity=0.743 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHEE
Q ss_conf 51268999999999999983007
Q gi|254780959|r 3 NKSCISFFLFIFLLLGLSFSSFF 25 (302)
Q Consensus 3 ~~~~i~~~v~i~~~~~~~~~~~~ 25 (302)
|++.+-+.+++++++.++||++|
T Consensus 13 nrtsLy~GlLlifvlavLFssYf 35 (37)
T 3bz1_L 13 NRTSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 05559999999999999999870
No 8
>>2acm_B Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens} (B:)
Probab=38.33 E-value=20 Score=14.36 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEHHHHHHHHH
Q ss_conf 9999998874221443100000011110124
Q gi|254780959|r 151 EVCEDLRYDAEKLGISIEDVRVLRTDLTQEV 181 (302)
Q Consensus 151 ~v~~~l~~~~~~~GI~I~~V~I~~i~~p~~i 181 (302)
...+.-.+.+.+|.+.|.+|.++++.+|..-
T Consensus 23 Qf~q~k~eAa~rYNLtIS~VsV~dv~fPsSA 53 (55)
T 2acm_B 23 QFNQYKTEAASRYNLTISDVSVSDVPFPFSA 53 (55)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEEECC------
T ss_pred HHHHHHHHHHHCCCEEEEEEEEEECCCCCCC
T ss_conf 9988655232101337656687641388645
No 9
>>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} (A:1-95)
Probab=22.31 E-value=37 Score=12.42 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=6.4
Q ss_pred ECCCCEEEEE
Q ss_conf 2289718980
Q gi|254780959|r 45 YREPGIYFKM 54 (302)
Q Consensus 45 ~~~pGlhfk~ 54 (302)
..+||++||+
T Consensus 38 ~~EpG~iWKI 47 (95)
T 2hiq_A 38 NQEPGFLWKV 47 (95)
T ss_dssp TTSTTEEEEE
T ss_pred CCCCCCEEEE
T ss_conf 0599815889
No 10
>>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization, X-RAY crystallography; 1.90A {Clostridium thermocellum} PDB: 3hee_A* (A:1-128)
Probab=19.24 E-value=42 Score=11.97 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEE---HHHHHHHH
Q ss_conf 15899999998874221443100000---01111012
Q gi|254780959|r 147 KMMMEVCEDLRYDAEKLGISIEDVRV---LRTDLTQE 180 (302)
Q Consensus 147 ~i~~~v~~~l~~~~~~~GI~I~~V~I---~~i~~p~~ 180 (302)
.-.-++++.+.+.++..|.+|.|+.- ...++|.-
T Consensus 9 haG~~lK~~i~~~L~~~g~eV~D~G~~~~~~~dypd~ 45 (128)
T 3he8_A 9 HGGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDF 45 (128)
T ss_dssp GGGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHH
T ss_conf 7469999999999998799889669998887683789
Done!