HHsearch results for GI: 254780959 and protein with PDBid: 3bk6_A
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH, membrane fusion, trafficking, transmembrane, membrane protein; 3.20A {Pyrococcus horikoshii}
Probab=99.88 E-value=2.7e-23 Score=194.87 Aligned_cols=178 Identities=17% Similarity=0.272 Sum_probs=149.7
Q ss_pred EEEEEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 03799987520134433100001122210124332101201101222013313346643467778765310112420000
Q gi|254780959|r 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDA 140 (302)
Q Consensus 61 i~~v~~~~~r~~~~~~~~~~v~T~D~~~v~vd~~v~yrI~dp~~~~~~~~~~~~~~~~~l~~~~~~~lr~v~~~~~~~e~ 140 (302)
++++..+|.|+++++.++.+++|+|++.+.++++++|||.||.+|++.+++ +...+.+.+++++|+++|+++++++
T Consensus 3 i~~~~~vD~R~~~~~i~~q~v~T~D~~~v~v~~~v~yrI~dp~~~~~~~~~----~~~~l~~~~~~~lr~~i~~~~l~ei 78 (188)
T 3bk6_A 3 FEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKN----YIMATSQISQTTLRSVIGQAHLDEL 78 (188)
T ss_dssp EEECCCCCSSCEEEEEEEEEEECTTSCEEEEEEEEEEEESCHHHHHHSSSC----HHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred EEEEEEEEEEEEEEECCCCEEECCCCCEEEEEEEEEEEECCHHHHHHHCCC----HHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 886389972578761798657738999899989999998987999874479----9999999999999988501658999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01210015899999998874221443100000011110124455431128999998877678899997655778899999
Q gi|254780959|r 141 LSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKAT 220 (302)
Q Consensus 141 l~~~R~~i~~~v~~~l~~~~~~~GI~I~~V~I~~i~~p~~i~~ai~~~~~ae~~~~A~~~~a~~~~ea~~~~a~ae~~~~ 220 (302)
++ +|..+...+.+.+.+.+.+|||+|.+|.|++++||+++.+++.+++.|+++++|...+|+++.++
T Consensus 79 l~-~r~~i~~~~~~~~~~~~~~~Gi~v~~V~I~di~~p~~v~~ai~~~~~Ae~e~~a~~~~Ae~e~~~------------ 145 (188)
T 3bk6_A 79 LS-ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA------------ 145 (188)
T ss_dssp HH-CHHHHHHHHHHHHHHHTGGGTEEEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_conf 86-47777678999999888732869999873467998779999999999999999999998999999------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 768989999888633878999999999987579999999999999998346993
Q gi|254780959|r 221 QILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMRAYTDSLASSDT 274 (302)
Q Consensus 221 ~i~AeA~~~a~~~~A~aeA~a~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 274 (302)
|+++++++++ +..+|..++ ++++|+++++.++.++
T Consensus 146 --------------ae~~~~aa~~----~~e~~~a~~-lr~~q~i~~i~~~~~~ 180 (188)
T 3bk6_A 146 --------------AEKLREAAEI----ISEHPMALQ-LRTLQTISDVAGDKSN 180 (188)
T ss_dssp --------------HHHHHHHHHH----HHHCTTHHH-HHHTTC----------
T ss_pred --------------HHHHHHHHHH----HHCCHHHHH-HHHHHHHHHHHHCCCC
T ss_conf --------------9999999999----852999999-9999999999716366