RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780959|ref|YP_003065372.1| putative hydrolase serine
protease transmembrane protein [Candidatus Liberibacter asiaticus str.
psy62]
(302 letters)
>gnl|CDD|48217 cd03405, Band_7_HflC, Band_7_HflC: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfC (High frequency of
lysogenization C). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflC is an integral membrane protein
which may localize to the plasma membrane. HflC
associates with another band 7 family member (HflK) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection..
Length = 242
Score = 234 bits (599), Expect = 2e-62
Identities = 101/246 (41%), Positives = 153/246 (62%), Gaps = 4/246 (1%)
Query: 24 FFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQV 83
FIVD +QA+V RFG++ EPG++FK+PF + +VK K+I+ L+ D RV
Sbjct: 1 LFIVDEGEQAVVLRFGEVVRVVTEPGLHFKLPF----IQQVKKFDKRILTLDSDPQRVLT 56
Query: 84 SDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSK 143
D K VDA +RI DP F Q+V + AAE+RL +++++R +G R + +S
Sbjct: 57 KDKKRLIVDAYAKWRITDPLRFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSG 116
Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRAR 203
+R ++M E+ + +A++LGI + DVR+ R DL +EVS+ Y RM+AER A RA
Sbjct: 117 ERGELMEEIRRAVAEEAKELGIEVVDVRIKRIDLPEEVSESVYRRMRAERERIAAEFRAE 176
Query: 204 GREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMR 263
G EE ++ + ADR+ T IL+EA R+++ G+G+AE RI + + KDPEF+ FYRS+
Sbjct: 177 GEEEAERIRADADRERTVILAEAYREAQEIRGEGDAEAARIYAEAYGKDPEFYAFYRSLE 236
Query: 264 AYTDSL 269
AY +S
Sbjct: 237 AYRNSF 242
>gnl|CDD|30678 COG0330, HflC, Membrane protease subunits, stomatin/prohibitin
homologs [Posttranslational modification, protein
turnover, chaperones].
Length = 291
Score = 170 bits (431), Expect = 5e-43
Identities = 74/280 (26%), Positives = 137/280 (48%), Gaps = 8/280 (2%)
Query: 7 ISFFLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKY 66
I + + +L+ L FSS F+V ++ +V RFG+ T EPG++FK+PF + V
Sbjct: 4 ILIIILLVILIVLLFSSIFVVKEGERGVVLRFGRYTRTLGEPGLHFKIPFPEAIEEVVVR 63
Query: 67 LQKQIMRLNL-DNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLD 125
+ + L++ V D VDA++ YR+ DP +V AE+ LR +
Sbjct: 64 VDLRERTLDVGPPQEVITKDNVIVSVDAVVQYRVTDPQKAVYNVE----NAEAALRQLVQ 119
Query: 126 ASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQT 185
+++R V G D+ L+++R ++ ++ E L A+ GI + DV + D +EV
Sbjct: 120 SALRSVIGRMTLDELLTERRAEINAKIREILDEAADPWGIKVVDVEIKDIDPPEEVQAAM 179
Query: 186 YDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRIL 245
+M AER AE + A G + + + +A IL+EA ++E+ + EA+ +I+
Sbjct: 180 EKQMAAERDKRAEILEAEGEAQAAILRAEGEAEAAIILAEAEAEAEV-IARAEADAAKII 238
Query: 246 SNVFQKDP--EFFEFYRSMRAYTDSLASSDTFLVLSPDSD 283
+ ++ P R + + + ++ +V+ P+S
Sbjct: 239 AAALREAPAAPQALAQRYLEELLEIALAGNSKVVVVPNSA 278
>gnl|CDD|144658 pfam01145, Band_7, SPFH domain / Band 7 family. This family has
been called SPFH, Band 7 or PHB domain.
Length = 177
Score = 96.7 bits (241), Expect = 6e-21
Identities = 53/182 (29%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 25 FIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNL-DNIRVQV 83
IV + +VTRFGK+ PG++FK+PF ++ + + ++ L + + V
Sbjct: 1 KIVPPGEVGVVTRFGKVSRV-LGPGLHFKLPF----IETIYVVDTRLQTLEVTVQLEVLT 55
Query: 84 SDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSK 143
DG VD + YR+ DP+ + + LR + +++R V D+ LS
Sbjct: 56 KDGVPVTVDVTVQYRVEDPAKLVANYG-GEDDLQELLRPLVRSALREVIARYTLDELLSN 114
Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAE-RLAEAEFIRA 202
RE++ EV E L+ + +K GI IEDV++ D E+++ ++ AE EAE RA
Sbjct: 115 -REEIAQEVKEALQEELDKYGIEIEDVQITDIDPPPEIAEAIEEKQAAEQEAEEAEIERA 173
Query: 203 RG 204
Sbjct: 174 EA 175
>gnl|CDD|48216 cd03404, Band_7_HflK, Band_7_HflK: The band 7 domain of flotillin
(reggie) like proteins. This group includes proteins
similar to prokaryotic HlfK (High frequency of
lysogenization K). Although many members of the band 7
family are lipid raft associated, prokaryote plasma
membranes lack cholesterol and are unlikely to have
lipid raft domains. Individual proteins of this band 7
domain family may cluster to form membrane microdomains
which may in turn recruit multiprotein complexes.
Escherichia coli HflK is an integral membrane protein
which may localize to the plasma membrane. HflK
associates with another band 7 family member (HflC) to
form an HflKC complex. HflKC interacts with FtsH in a
large complex termed the FtsH holo-enzyme. FtsH is an
AAA ATP-dependent protease which exerts progressive
proteolysis against membrane-embedded and soluble
substrate proteins. HflKC can modulate the activity of
FtsH. HflKC plays a role in the decision between
lysogenic and lytic cycle growth during lambda phage
infection..
Length = 266
Score = 96.0 bits (239), Expect = 1e-20
Identities = 70/265 (26%), Positives = 118/265 (44%), Gaps = 34/265 (12%)
Query: 10 FLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQK 69
+ L++ S F+IV ++ +V RFGK T EPG+++K+P+ V+ V Q
Sbjct: 1 LIAALLVILWLLSGFYIVQPGERGVVLRFGKYSRT-VEPGLHWKLPYPIEVVEVVPVFQL 59
Query: 70 QIMRLNLDNIRVQ---------VSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRL 120
+ + + + V+ D +V+ + YRI DP + +V E L
Sbjct: 60 RSVGIPVRVGSVRSVPGESLMLTGDENIVDVEFAVQYRISDPYDYLFNVR----DPEGTL 115
Query: 121 RTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDL--RYDAEKLGISIEDVRVLRTDLT 178
R ++++R V G DD L++ RE++ +V E L DA K GI I V + D
Sbjct: 116 RQAAESAMREVVGRSTLDDVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPP 175
Query: 179 QEV---------SQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARRD 229
+EV ++Q +R+ E A A + + R E + + A EA ++
Sbjct: 176 EEVQDAFDDVNKARQDRERLINEAEAYANEVVPKARGEAARIIQEA---------EAYKE 226
Query: 230 SEINYGKGEAERGRILSNVFQKDPE 254
I +GEA R L ++K P+
Sbjct: 227 EVIAEAQGEAARFESLLAEYKKAPD 251
>gnl|CDD|48215 cd03403, Band_7_stomatin_like, Band_7_stomatin_like: A subgroup of
the band 7 domain of flotillin (reggie) like proteins
similar to stomatin and podicin (two lipid
raft-associated integral membrane proteins). Individual
proteins of this band 7 domain family may cluster to
form membrane microdomains which may in turn recruit
multiprotein complexes. Stomatin is widely expressed
and, highly expressed in red blood cells. It localizes
predominantly to the plasma membrane and to
intracellular vesicles of the endocytic pathway, where
it is present in higher order homo-oligomeric complexes
(of between 9 and 12 monomers). Stomatin interacts with
and regulates members of the degenerin/epithelia Na+
channel family in mechanosensory cells of Caenorhabditis
elegans and vertebrate neurons and, is implicated in
trafficking of Glut1 glucose transporters. Prohibitin is
a mitochondrial inner-membrane protein hypothesized to
act as a chaperone for the stabilization of
mitochondrial proteins. Podicin localizes to the plasma
membrane of podocyte foot processes and, is found in
higher order oligomers. Podocin plays a role in
regulating glomerular permeability. Mutations in the
podicin gene give rise to autosomal recessive steroid
resistant nephritic syndrome. This group also contains
proteins similar to three Caenorhabditis elegans
proteins: UNC-1, UNC-24 and, MEC-2. Mutations in the
unc-1 and unc-24 genes result in abnormal motion and
altered patterns of sensitivity to volatile anesthetics.
MEC-2 and UNC-24 proteins interact with MEC-4 which is
part of the degenerin channel complex required for
response to gentle body touch..
Length = 215
Score = 78.6 bits (194), Expect = 2e-15
Identities = 60/208 (28%), Positives = 98/208 (47%), Gaps = 22/208 (10%)
Query: 27 VDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQK-QIMRLNLDNIRVQVSD 85
V ++ +V R GK H T PG++F +PF +DR+ Y + L++ V D
Sbjct: 1 VPQYERGVVERLGKYHRT-LGPGLHFIIPF----IDRIAYKVDLREQVLDVPPQEVITKD 55
Query: 86 GKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALSKQR 145
VDA++ YR++DP V R A +T ++R V G D+ LS +R
Sbjct: 56 NVTVRVDAVLYYRVVDPVKAVYGVEDYRYAISQLAQT----TLRSVIGKMELDELLS-ER 110
Query: 146 EKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGR 205
E++ E+ E L + G+ +E V + L QE+ + + +AER A+ I A G
Sbjct: 111 EEINAELVEILDEATDPWGVKVERVEIKDIILPQEIQEAMAKQAEAEREKRAKIIEAEG- 169
Query: 206 EEGQKRMSIADRKATQILSEARRDSEIN 233
+R+A +L+EA + + IN
Sbjct: 170 ----------ERQAAILLAEAAKQAAIN 187
>gnl|CDD|37831 KOG2620, KOG2620, KOG2620, Prohibitins and stomatins of the PID
superfamily [Energy production and conversion].
Length = 301
Score = 65.0 bits (158), Expect = 3e-11
Identities = 47/218 (21%), Positives = 89/218 (40%), Gaps = 13/218 (5%)
Query: 26 IVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLD-NIRVQVS 84
V ++ A+V RFGK H EPG++F P +D++ Y+ LD
Sbjct: 11 FVPQQEAAVVERFGKFHRIL-EPGLHFLPPV----IDKIAYVHSLKEIAILDPKQEAITK 65
Query: 85 DGKFYEVDAMMTYRIIDPSLFCQS--VSCDRIAAESRLRTRLDASIRRVYGLRRFDDALS 142
D F ++D ++ YR++DP S V A + +T + + + ++ D +
Sbjct: 66 DNVFVQIDGVLYYRVVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTL-----DKVF 120
Query: 143 KQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRA 202
++R + + E + E G + + V + + +AER+ A + +
Sbjct: 121 EERNSLNKSIVEAINKAMEAWGYECLRYEIRDIEPPPSVKRAMNMQNEAERMKRAAILES 180
Query: 203 RGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAE 240
G Q + ++++ + SE N GEAE
Sbjct: 181 EGERIAQINRAEGEKESKILASEGIARQRQNIADGEAE 218
>gnl|CDD|48210 cd02106, Band_7, The band 7 domain of flotillin (reggie) like
proteins. This group contains proteins similar to
stomatin, prohibitin, flotillin, HlfK/C and podicin.
Many of these band 7 domain-containing proteins are
lipid raft-associated. Individual proteins of this band
7 domain family may cluster to form membrane
microdomains which may in turn recruit multiprotein
complexes. Microdomains formed from flotillin proteins
may in addition be dynamic units with their own
regulatory functions. Flotillins have been implicated
in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome.
Length = 121
Score = 61.6 bits (149), Expect = 3e-10
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 69 KQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASI 128
+ L++ V D VDA++ YR++DP +V E LR +++
Sbjct: 4 LRRQTLDVPPQEVLTKDNVPVRVDAVVQYRVVDPVKALYNV--RDPEDEEALRQLAQSAL 61
Query: 129 RRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDR 188
R V G D+ L + R+++ EV E L+ D +K GI + DVR+ D +EV + DR
Sbjct: 62 RSVIGKMTLDE-LLEDRDEIAAEVREALQEDLDKYGIEVVDVRIKDIDPPEEVQEAMEDR 120
Query: 189 M 189
Sbjct: 121 Q 121
>gnl|CDD|37832 KOG2621, KOG2621, KOG2621, Prohibitins and stomatins of the PID
superfamily [Energy production and conversion].
Length = 288
Score = 57.2 bits (138), Expect = 6e-09
Identities = 60/229 (26%), Positives = 102/229 (44%), Gaps = 27/229 (11%)
Query: 7 ISFFLFIFLLLGLSFSSFF---IVDARQQAIVTRFGKI-HATYREPGIYFKMPF--SFMN 60
+ F+ +L+ S +F IV ++A++ R G++ R PG++F +P +F
Sbjct: 35 LVILSFLLVLMTFPISIWFCLKIVQEYERAVIFRLGRLRTGGARGPGLFFLLPCIDTFRK 94
Query: 61 VDRVKYLQKQIMRLNLDNIRVQ---VSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAE 117
VD +R N+ Q D VDA++ YRI DP + +V D A
Sbjct: 95 VD---------LRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPIIAVNNVG-DADNAT 144
Query: 118 SRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDL 177
L ++R G + + LS RE + E + L E G+ +E V + L
Sbjct: 145 RLLAQ---TTLRNYLGTKTLSEILS-SREVIAQEAQKALDEATEPWGVKVERVEIKDVRL 200
Query: 178 TQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEA 226
++ + +A R A A+ I A EG+K+ S A ++A ++SE+
Sbjct: 201 PAQLQRAMAAEAEATREARAKVIAA----EGEKKASEALKEAADVISES 245
>gnl|CDD|48214 cd03402, Band_7_2, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome..
Length = 219
Score = 54.1 bits (130), Expect = 4e-08
Identities = 34/181 (18%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 23 SFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQ 82
F+V+ Q ++ FG+ T R G+ + PFS K + ++ + ++V
Sbjct: 1 GLFVVEPNQARVLVLFGRYIGTIRRTGLRWVNPFSSK-----KRVSLRVRNFESEKLKVN 55
Query: 83 VSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALS 142
++G E+ A++ +R++D + +V E + + ++++R V +DD ++
Sbjct: 56 DANGNPIEIAAVIVWRVVDTAKAVFNVD----DYEEFVHIQSESALRHVASQYPYDDPVN 111
Query: 143 KQR------EKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAE 196
K+ +++ E+ +L+ G+ + + R+ E++Q R +A +
Sbjct: 112 KETSLRGNSDEVSDELARELQERLAVAGVEVVEARITHLAYAPEIAQAMLQRQQASAIIA 171
Query: 197 A 197
A
Sbjct: 172 A 172
>gnl|CDD|48220 cd03408, Band_7_5, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome..
Length = 207
Score = 40.3 bits (94), Expect = 7e-04
Identities = 30/196 (15%), Positives = 54/196 (27%), Gaps = 26/196 (13%)
Query: 19 LSFSSFFIVDARQQAIVTRFGKIHATYREPGIYF---------------KMPFSFMNVDR 63
+ S IV Q A+ GK+ + G Y K S +
Sbjct: 11 IKNGSQLIVREGQAAVFVNEGKVADVFAPGGYYLTTNNLPVLAFLLSGDKGFSSPFKGEV 70
Query: 64 VKYLQKQI--MRLNLDNIRVQVS---DGKFYEVDAMMTYRIIDPSLFCQSV-----SCDR 113
+ + + G + ++ DP LF ++
Sbjct: 71 YFFNTRVFTDLLWGTPAPVFGRDSEFGGVPLRAFGTYSLKVTDPVLFVTNIVGTRGLFTV 130
Query: 114 IAAESRLRTRLDASIRRVYG-LRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRV 172
E LR + A++ L+ R+++ V E L G+ + V +
Sbjct: 131 EDLEKSLRALIVAALSSALSESGLAVMLLAANRDELSKAVREALAPWFASFGLELVSVYI 190
Query: 173 LRTDLTQEVSQQTYDR 188
EV + R
Sbjct: 191 ESISYPDEVQKLIDKR 206
>gnl|CDD|48219 cd03407, Band_7_4, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome..
Length = 262
Score = 40.3 bits (94), Expect = 7e-04
Identities = 53/218 (24%), Positives = 83/218 (38%), Gaps = 35/218 (16%)
Query: 31 QQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIRVQ--VSDGKF 88
Q AI+ RFGK PG +F +P R+ +R+ ++RV+ D F
Sbjct: 3 QVAIIERFGKFFKV-AWPGCHFVIPLVETVAGRLS------LRVQQLDVRVETKTKDNVF 55
Query: 89 YEVDAMMTYRIID------PSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRRFDDALS 142
V + YR+ + + LR R+ L D L
Sbjct: 56 VTVVGQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPK-----LTL----DELF 106
Query: 143 KQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRA 202
+Q++++ V E+LR + G I + D EV + + A+R A A
Sbjct: 107 EQKDEIAKAVEEELREAMSRYGFEIVATLITDIDPDAEVKRAMNEINAAQRQRVA----A 162
Query: 203 RGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAE 240
+ E +K I D KA + +EA+R G G AE
Sbjct: 163 VHKAEAEK---IKDIKAAEADAEAKRLQ----GVGAAE 193
>gnl|CDD|38293 KOG3083, KOG3083, KOG3083, Prohibitin [Posttranslational
modification, protein turnover, chaperones].
Length = 271
Score = 36.9 bits (85), Expect = 0.007
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 19/110 (17%)
Query: 136 RFD-DALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLT-----------QEVSQ 183
RFD L QRE + +V DL A G+ ++DV T LT ++V+Q
Sbjct: 133 RFDAGELITQRELVSRQVSNDLTERAATFGLILDDVS--ITHLTFGKEFTEAVEAKQVAQ 190
Query: 184 QTYDR-----MKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEARR 228
Q +R KAE+ +A I A G + + ++ + A L E RR
Sbjct: 191 QEAERARFVVEKAEQQKKAAVISAEGDSKAAELIANSLATAGDGLIELRR 240
>gnl|CDD|38300 KOG3090, KOG3090, KOG3090, Prohibitin-like protein
[Posttranslational modification, protein turnover,
chaperones].
Length = 290
Score = 34.6 bits (79), Expect = 0.039
Identities = 31/145 (21%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 141 LSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAE-AEF 199
L QRE++ + + L A I+++DV + +E + + A + A+ A+F
Sbjct: 150 LITQREQVSRLIRKILTERAADFNIALDDVSITELTFGKEFTAAIEAKQVAAQEAQRAKF 209
Query: 200 IRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFEF- 258
I + +E Q S I +GEA+ +++ + +P F
Sbjct: 210 IVEKAEQEKQ--------------------SAIVRAQGEAKSAQLIGEAIKNNPAFITLR 249
Query: 259 -YRSMRAYTDSLASSDTFLVLSPDS 282
+ R ++ASS + LS D
Sbjct: 250 KIEAAREIAQTIASSANKVYLSSDD 274
>gnl|CDD|32449 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 32.3 bits (73), Expect = 0.14
Identities = 44/254 (17%), Positives = 78/254 (30%), Gaps = 52/254 (20%)
Query: 11 LFIFLLLGLSFSSF-FIVDARQQAIVTRFGKIHATYRE---------PGIYFKMPFSFMN 60
+ I ++L L F F + AR + R G + E G MP
Sbjct: 19 VVILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPI---- 74
Query: 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAM-MTYRIIDPSLFCQSVSCDRIAAESR 119
+ I R++L I+++V Y D M + + + AAE
Sbjct: 75 -------FQTIERMSLTTIKLEVEIDNVYTKDGMPLNVEAVAYVKIGDTFQDIATAAERF 127
Query: 120 LRTRLDASIRRVYGLRRFDDAL------------SKQREKMMMEVCEDLRYDAEKLGISI 167
+ ++ + AL ++ R V E + D K+G+ +
Sbjct: 128 GGKGSREDLEQLAE-DTLEGALRAVLAQMTVEELNEDRLGFAQVVQEVVGDDLSKMGLVL 186
Query: 168 EDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMSIADRKATQILSEAR 227
+ + + D+ E ++ A GR IA ++E
Sbjct: 187 DSLAI--NDINDT---------SKENQDPNNYLDALGRRR------IAQVLQDAEIAENE 229
Query: 228 RDSEINYGKGEAER 241
+ E EA R
Sbjct: 230 AEKETEIAIAEANR 243
>gnl|CDD|48213 cd03401, Band_7_prohibitin, Band_7_prohibitin. A subgroup of the
band 7 domain of flotillin (reggie) like proteins. This
subgroup group includes proteins similar to prohibitin
(a lipid raft-associated integral membrane protein).
Individual proteins of this band 7 domain family may
cluster to form membrane microdomains which may in turn
recruit multiprotein complexes. These microdomains in
addition to being stable scaffolds may also be also
dynamic units with their own regulatory functions.
Prohibitin is a mitochondrial inner-membrane protein
which may act as a chaperone for the stabilization of
mitochondrial proteins. Human prohibitin forms a
heter-oligomeric complex with Bap-37 (prohibitin 2, a
band 7 domain carrying homologue). This complex may
protect non-assembled membrane proteins against
proteolysis by the m-AAA protease. Prohibitin and Bap-37
yeast homologues have been implicated in yeast longevity
and, in the maintenance of mitochondrial morphology..
Length = 196
Score = 32.5 bits (74), Expect = 0.15
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 18/82 (21%)
Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLT-----------QEVSQQ-----TYD 187
QRE++ + E L A+ GI ++DV + T LT ++V+QQ +
Sbjct: 117 QREEVSALIREALTERAKDFGIILDDVSI--THLTFSKEFTKAVEAKQVAQQEAERAKFV 174
Query: 188 RMKAERLAEAEFIRARGREEGQ 209
KAE+ +A IRA G E
Sbjct: 175 VEKAEQEKQAAVIRAEGEAEAA 196
>gnl|CDD|48212 cd03400, Band_7_1, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome..
Length = 124
Score = 32.6 bits (74), Expect = 0.15
Identities = 19/105 (18%), Positives = 40/105 (38%)
Query: 77 DNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTRLDASIRRVYGLRR 136
+ I V +G D + YRI A +R + +R V G
Sbjct: 12 EKIDVLSKEGLSINADVSVQYRINPNKAAAVHSKLGTDYARKIVRPTFRSLVREVTGRYT 71
Query: 137 FDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEV 181
+ S +R+++ + ++L + G+ +E+V + L ++
Sbjct: 72 AEQIYSTKRKEIESAIKKELIEEFVGDGLILEEVLLRNIKLPDQI 116
>gnl|CDD|35385 KOG0163, KOG0163, KOG0163, Myosin class VI heavy chain
[Cytoskeleton].
Length = 1259
Score = 31.1 bits (70), Expect = 0.42
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 135 RRFDDALSKQREKMMMEVCEDLRYDAEKLGISIED-VRVLRTDLTQEVSQQTYDRMKAER 193
R+ DD + K KM ++ + + + E V+ L + Q++ + R K +
Sbjct: 875 RQIDDLVKKI--KMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEELERLR-KIQE 931
Query: 194 LAEAEFIRARGREEGQKRMSIADRKATQILSEARRDSE 231
LAEAE R R E ++R ++K + E +R +E
Sbjct: 932 LAEAE--RKRREAEEKRRREEEEKKRAKAEMETKRKAE 967
>gnl|CDD|48218 cd03406, Band_7_3, A subgroup of the band 7 domain of flotillin
(reggie) like proteins. This subgroup contains proteins
similar to stomatin, prohibitin, flotillin, HlfK/C and
podicin. Many of these band 7 domain-containing
proteins are lipid raft-associated. Individual proteins
of this band 7 domain family may cluster to form
membrane microdomains which may in turn recruit
multiprotein complexes. Microdomains formed from
flotillin proteins may in addition be dynamic units with
their own regulatory functions. Flotillins have been
implicated in signal transduction, vesicle trafficking,
cytoskeleton rearrangement and are known to interact
with a variety of proteins. Stomatin interacts with and
regulates members of the degenerin/epithelia Na+ channel
family in mechanosensory cells of Caenorhabditis elegans
and vertebrate neurons and participates in trafficking
of Glut1 glucose transporters. Prohibitin may act as a
chaperone for the stabilization of mitochondrial
proteins. Prokaryotic HflK/C plays a role in the
decision between lysogenic and lytic cycle growth during
lambda phage infection. Flotillins have been implicated
in the progression of prion disease, in the pathogenesis
of neurodegenerative diseases such as Parkinson's and
Alzheimer's disease and, in cancer invasion and
metastasis. Mutations in the podicin gene give rise to
autosomal recessive steroid resistant nephritic
syndrome..
Length = 280
Score = 30.0 bits (67), Expect = 0.79
Identities = 49/267 (18%), Positives = 102/267 (38%), Gaps = 41/267 (15%)
Query: 21 FSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRLNLDNIR 80
S+ ++ + R G + + PG + +PF + K +Q + + N+
Sbjct: 2 SSALHKIEEGHVGVYYRGGALLTSTSGPGFHLMLPF----ITTYKSVQVTLQTDEVKNVP 57
Query: 81 VQVSDGKFYEVDAMMTYRIIDPS-----LFCQSVSCDRIAAESRLRTRLDA-----SIRR 130
S G D + + P + + D+ +++ L+ +++
Sbjct: 58 CGTSGGVMIYFDRIEVVNFLIPDSVYDIVKNYTADYDKTLIFNKIHHELNQFCSVHTLQE 117
Query: 131 VYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMK 190
VY + FD + E + + + +DL A G+ I+ VRV + + + + ++ Y+ M+
Sbjct: 118 VY-IDLFD----QIDENLKLALQKDLTRMAP--GLEIQAVRVTKPKIPEAI-RRNYELME 169
Query: 191 AERL-------------AEAEFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKG 237
AE+ EAE R + E +K +A Q + E + I+ +
Sbjct: 170 AEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRISEIED 229
Query: 238 EAERGRILSNVFQKDPEFFEFYRSMRA 264
EA R +K E+Y + +
Sbjct: 230 EAFLAR------EKAKADAEYYTAQKE 250
Score = 28.4 bits (63), Expect = 2.7
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 154 EDLRYDAEKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEAEFIRARGREEGQKRMS 213
E + + KL I+I+ +V+ + E + + K ++A+ F + +E +KR+S
Sbjct: 166 ELMEAEKTKLLIAIQKQKVVEKEAETERKKAVIEAEKVAQVAKILFGQKVMEKETEKRIS 225
Query: 214 IADRKATQILSEARRDSEINYGKGEAERGRILSNVFQKDPEFFE--FYRSMRAYT 266
+ +A +A+ D+E + EAE +N + PE+ E Y ++ A +
Sbjct: 226 EIEDEAFLAREKAKADAEYYTAQKEAE-----ANKLKLTPEYLELMKYEAIAANS 275
>gnl|CDD|37110 KOG1899, KOG1899, KOG1899, LAR transmembrane tyrosine
phosphatase-interacting protein liprin [General function
prediction only].
Length = 861
Score = 29.7 bits (66), Expect = 0.89
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 140 ALSKQREKMMMEVCE-DLRYDA-EKLGISIEDVRVLRTDLTQEVSQQTYDRMKAERLAEA 197
+L Q+ +M EV E L+ A EK E L +L QEV+Q + ERL
Sbjct: 171 SLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYE 230
Query: 198 EFIRARGREEGQKRMSIADRKATQILSEARRDSEINYGKGEAERGRI------LSNVFQK 251
+++ E R ++ K + + R + GE + R L ++ +
Sbjct: 231 TKLKSTKGEMAPLREQRSE-KNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRA 289
Query: 252 DPEFFEFYRSMRAYTD 267
+ + F S+R Y +
Sbjct: 290 NEQKDRFIESLRNYLN 305
>gnl|CDD|177157 MTH00094, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 403
Score = 29.5 bits (67), Expect = 1.1
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 1 MSNKSCISF-FLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFM 59
K+ SF F+F + L+ +S F IV + + F + +P FM
Sbjct: 340 SFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNF-------NVGLSLPLVFM 392
Query: 60 N 60
Sbjct: 393 M 393
>gnl|CDD|38173 KOG2962, KOG2962, KOG2962, Prohibitin-related membrane protease
subunits [General function prediction only].
Length = 322
Score = 28.5 bits (63), Expect = 2.6
Identities = 53/277 (19%), Positives = 106/277 (38%), Gaps = 41/277 (14%)
Query: 10 FLFIFLLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQK 69
I LL+ S+ ++ + R G + + PG + +PF + K +Q
Sbjct: 9 AAAIALLVAFLSSAVHKIEEGHVGVYYRGGALLTSITGPGFHLMLPF----ITTYKSVQV 64
Query: 70 QIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPS-----LFCQSVSCDRIAAESRLRTRL 124
+ + N+ S G D + + P + +V D+ +++ L
Sbjct: 65 TLQTDEVKNVPCGTSGGVLIYFDRIEVVNFLRPDAVYDIVKNYTVDYDKTLIFNKIHHEL 124
Query: 125 DA-----SIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQ 179
+ +++ VY + FD + E + + DL A G+ I+ VRV + + +
Sbjct: 125 NQFCSVHTLQEVY-IDLFD----QIDENLKDALQADLTRMAP--GLEIQAVRVTKPKIPE 177
Query: 180 EVSQQTYDRMKAERL-------------AEAEFIRARGREEGQKRMSIADRKATQILSEA 226
+ ++ ++ M+AE+ EAE R + E +K +A Q L E
Sbjct: 178 AI-RRNFELMEAEKTKLLIAAEKQKVVEKEAETERKKAVIEAEKNAQVAKILMQQKLMEK 236
Query: 227 RRDSEINYGKGEAERGRILSNVFQKDPEFFEFYRSMR 263
+ I+ + A R +K E+YR+++
Sbjct: 237 ETEKRISEIEDAAFLAR------EKSKADAEYYRALK 267
>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 256
Score = 27.6 bits (62), Expect = 4.4
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 1 MSNKSCISFFLFIFLLLGLSFSSF 24
+SNKSC + L + LGL F+SF
Sbjct: 149 LSNKSC-TNSLLLTCFLGLYFTSF 171
>gnl|CDD|33674 COG3885, COG3885, Uncharacterized conserved protein [Function
unknown].
Length = 261
Score = 27.6 bits (61), Expect = 4.7
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 248 VFQKDPEFFEFYRSMRAYTDSLASSDTFLVLSP 280
+ +D E + ++++ S+T++V+SP
Sbjct: 15 IDPEDEESRKLNKAIKEIASDDKGSETYVVISP 47
>gnl|CDD|35900 KOG0681, KOG0681, KOG0681, Actin-related protein - Arp5p
[Cytoskeleton].
Length = 645
Score = 27.3 bits (60), Expect = 5.4
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 10/122 (8%)
Query: 113 RIAAESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRV 172
+ + ++RLR R++ + R+ + L ++RE+ ++ E+LR EKL I +
Sbjct: 357 KASTDARLRARVEKELERL-------NKLEEEREENLISWLEELREKLEKLLERISQKKR 409
Query: 173 LRTDLTQEVSQQTYDRMKA-ERLAEAEFIR--ARGREEGQKRMSIADRKATQILSEARRD 229
L+ +L S + RM+A RLA + +R + D + L E +
Sbjct: 410 LKQELKDRKSHASQLRMRALARLAYEQVVRRKRKEATPDNFGARDEDWDVYEDLEEENKS 469
Query: 230 SE 231
Sbjct: 470 IL 471
>gnl|CDD|33246 COG3442, COG3442, Predicted glutamine amidotransferase [General
function prediction only].
Length = 250
Score = 26.8 bits (59), Expect = 8.4
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 156 LRYDAEKLGISIEDVRVLRTDLTQEVSQQTYD 187
LR AEK GI +E ++ LT +YD
Sbjct: 26 LRQRAEKRGIKVE---IVEVSLTDTFPDDSYD 54
>gnl|CDD|145733 pfam02738, Ald_Xan_dh_C2, Molybdopterin-binding domain of aldehyde
dehydrogenase.
Length = 543
Score = 26.5 bits (59), Expect = 9.3
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 145 REKMMMEVCEDLRYDAEKLGISIEDVRVL-------RTDLTQEVSQQTYDRMKAERLAEA 197
E+++ E+ A +LGI ++R T Q + E +
Sbjct: 224 LERLIDEL-------ARELGIDPLEIRRKNLYKEGDTTPFGQRLDSGNLPECLDECRKSS 276
Query: 198 EFIRARGREEGQK 210
EF RAR R +K
Sbjct: 277 EF-RAR-RAAVEK 287
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.326 0.138 0.388
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,663,332
Number of extensions: 196238
Number of successful extensions: 1082
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 59
Length of query: 302
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,254,100
Effective search space: 889106900
Effective search space used: 889106900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)