RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780959|ref|YP_003065372.1| putative hydrolase serine
protease transmembrane protein [Candidatus Liberibacter asiaticus str.
psy62]
(302 letters)
>1win_A Flotillin 2; BAND 7 domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, cell
adhesion; NMR {Mus musculus} (A:)
Length = 143
Score = 77.0 bits (189), Expect = 3e-15
Identities = 17/140 (12%), Positives = 43/140 (30%), Gaps = 6/140 (4%)
Query: 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIA----- 115
+ + +IM L V+ ++G V + +I+ +
Sbjct: 4 GSSGQRISLEIMTLQPRCEDVETAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQD 63
Query: 116 AESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRT 175
++ + L+ +R + G + + R++ V E D ++GI I +
Sbjct: 64 IKNVVLQTLEGHLRSILGTLTVEQIY-QDRDQFAKLVREVAAPDVGRMGIEILSFTIKDV 122
Query: 176 DLTQEVSQQTYDRMKAERLA 195
+ + +
Sbjct: 123 YDKVDYLSSLGKTQTSGPSS 142
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus
horikoshii} (A:)
Length = 113
Score = 68.0 bits (166), Expect = 1e-12
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 64 VKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRLRTR 123
++ + +++ V D VDA++ Y++IDP +VS +
Sbjct: 2 SDHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVYNVS----DFLMAIVKL 57
Query: 124 LDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180
++R + G D+ LS R+ + + E+L ++ G+ I V + R D ++
Sbjct: 58 AQTNLRAIIGEMELDETLS-GRDIINARLREELDKITDRWGVKITRVEIQRIDPPKD 113
>3bk6_A PH stomatin; archaea, trimer, coiled- coil, flotillin, SPFH,
membrane fusion, trafficking, transmembrane, membrane
protein; 3.20A {Pyrococcus horikoshii} (A:1-114)
Length = 114
Score = 64.2 bits (156), Expect = 2e-11
Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 5/117 (4%)
Query: 61 VDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAAESRL 120
++ + + L++ D V+A++ +R++DP V
Sbjct: 3 FEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQV----KNYIMAT 58
Query: 121 RTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDL 177
++R V G D+ LS +R+K+ M++ + + GI + V + +L
Sbjct: 59 SQISQTTLRSVIGQAHLDELLS-ERDKLNMQLQRIIDEATDPWGIKVTAVEIKDVEL 114
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S,
iron-sulfur, oxidoreductase, purine metabolism,
molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN;
2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B*
1jro_B* 2w54_B* 2w55_B* (B:462-606)
Length = 145
Score = 31.0 bits (70), Expect = 0.20
Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%)
Query: 160 AEKLGISIEDVRVLRTDLTQEV--------SQQTYDRMKAERLAEAEFIRARGREEGQKR 211
A LGI VR+ TD T +V S A + A E +R R R
Sbjct: 40 AAVLGIDPVQVRITATD-TSKVPNTSATAASSGADMNGMAVKDA-CETLRGRLAGFVAAR 97
Query: 212 MSIA 215
A
Sbjct: 98 EGCA 101
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum,
MCD; HET: FAD MCN; 1.80A {Pseudomonas putida}
(B:482-633)
Length = 152
Score = 27.6 bits (61), Expect = 1.9
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 160 AEKLGISIEDVRVL--RTDLTQEV----SQQTYDRMKAERLAEAEFIRARGREEGQKRMS 213
A+ LG+ DV + T T S+ + A A +R R ++ +
Sbjct: 38 ADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRA-ASIVRERVKQLAGHLLE 96
Query: 214 IA 215
A
Sbjct: 97 AA 98
>2jxp_A Putative lipoprotein B; uncharacterized lipoprotein B,
structure, northeast structural genomics consortium,
NESG, PSI-2; NMR {Nitrosomonas europaea atcc 19718} (A:)
Length = 155
Score = 27.5 bits (61), Expect = 2.5
Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 13/142 (9%)
Query: 57 SFMNVDRVKYLQKQIMRLNLDNIRVQVSDGKFYEVDAMMTYRIIDPSLFCQSVSCDRIAA 116
+ + L++ I V+ + + +A++ S+S
Sbjct: 21 APAGLTIGSDLERVIST---HTRAKVVNKAE--KSEAIIQIVHAIREKRILSLSESGRVR 75
Query: 117 ESRLRTRLDASIRRVYGLRRFDDALSKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTD 176
E L R+ A + D ++ + + L + + + +L D
Sbjct: 76 EFELVYRVAARLL--------DAHNAELASLQEIRLTRILPFLDAQELAKAAEEEMLYKD 127
Query: 177 LTQEVSQQTYDRMKAERLAEAE 198
+ ++ QQ ++ A A E
Sbjct: 128 MQKDAVQQILRQVSAFTSAGLE 149
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit;
selenium ligand, iron, iron-sulfur, metal-binding,
oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium
barkeri} (B:20-172)
Length = 153
Score = 26.9 bits (59), Expect = 3.4
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 160 AEKLGISIEDVRVLRTDLTQEV-------SQQTYDRMKAERLAEAEFIRARGREEGQKRM 212
AE+LG+ E + V D S+QT A LA + + +++
Sbjct: 39 AEELGLDYEKIHVTWGDTMVTPDGGATSASRQTLITGNAVILA-CRQAKETLAKTAAEKL 97
Query: 213 SIA 215
A
Sbjct: 98 DCA 100
>2aal_A Malonate semialdehyde decarboxylase; tautomerase
superfamily, beta-alpha-beta, homotrimeric, lyase; 1.65A
{Pseudomonas pavonaceae} (A:)
Length = 131
Score = 26.9 bits (59), Expect = 3.6
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180
Q+ + L GIS +DV V + +
Sbjct: 80 QKVCFYKLLTGAL---ERDCGISPDDVIVALVENSDA 113
>1mww_A Hypothetical protein HI1388.1; structural genomics,
structure 2 function project, S2F, unknown function;
HET: GLU; 2.08A {Haemophilus influenzae} (A:)
Length = 128
Score = 26.8 bits (59), Expect = 4.0
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 144 QREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180
+++++ + +L KLGI DV + +
Sbjct: 74 TKKRLIKMLFSEL---EYKLGIRAHDVEITIKEQPAH 107
>2ppv_A Uncharacterized protein; NP_764104.1, structural genomics,
joint center for structural genomics, JCSG; 2.00A
{Staphylococcus epidermidis atcc 12228} (A:)
Length = 332
Score = 25.6 bits (56), Expect = 7.5
Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 128 IRRVYGLRRFDDAL-------SKQREKMMMEVCEDLRYDAEKLGISIEDVRVLRTDLTQE 180
+ R G D + ++ + + + E+L +RVL E
Sbjct: 237 LTRQVGEPFIDFVICSSESYSKDVLQRYEEKNSKPVAVHKEQL--KDSGIRVLTASNLVE 294
Query: 181 VSQQTYDRMKAERLAE 196
+S + Y R + L++
Sbjct: 295 ISNEHYVRHNTKVLSK 310
>1cza_N Hexokinase type I; structurally homologous domains; HET: GLC
G6P ADP; 1.90A {Homo sapiens} (N:520-657,N:896-917)
Length = 160
Score = 25.7 bits (56), Expect = 7.8
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 13/74 (17%)
Query: 15 LLLGLSFSSFFIVDARQQAIVTRFGKIHATYREPGIYFKMPFSFMNVDRVKYLQKQIMRL 74
+ LG +FS + I+ + K FK + D V L+ I R
Sbjct: 77 MPLGFTFSFPCQQTSLDAGILITWTK----------GFKAT-DCVGHDVVTLLRDAIKRR 125
Query: 75 NLDNIRVQ--VSDG 86
++ V V+DG
Sbjct: 126 EEFDLDVVAVVNDG 139
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.138 0.388
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,299,394
Number of extensions: 106586
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 31
Length of query: 302
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 214
Effective length of database: 1,981,209
Effective search space: 423978726
Effective search space used: 423978726
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.1 bits)